Wall clock time and date at job start Tue Mar 31 2020 13:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40081 * 126.03714 * 2 1 4 4 C 1.30840 * 108.20480 * 180.23245 * 3 2 1 5 5 C 1.39875 * 108.20240 * 359.78166 * 4 3 2 6 6 C 1.34944 * 126.03325 * 179.84672 * 2 1 3 7 7 C 1.50701 * 126.13198 * 0.03644 * 6 2 1 8 8 H 1.09003 * 109.46562 * 334.70949 * 7 6 2 9 9 C 1.52999 * 109.47378 * 94.71159 * 7 6 2 10 10 C 1.52999 * 109.47168 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47140 * 300.00003 * 10 9 7 12 12 C 1.52999 * 109.47093 * 59.99951 * 11 10 9 13 13 H 1.09003 * 109.47445 * 60.00170 * 12 11 10 14 14 N 1.46904 * 109.47409 * 180.02562 * 12 11 10 15 15 C 1.46896 * 111.00095 * 275.00412 * 14 12 11 16 16 C 1.52997 * 109.47114 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47143 * 59.99844 * 16 15 14 18 18 C 1.52997 * 109.47232 * 299.99800 * 16 15 14 19 19 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 20 20 C 1.50698 * 109.47184 * 179.97438 * 19 16 15 21 21 H 1.08005 * 119.99819 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00046 * 179.97438 * 20 19 16 23 23 N 1.31511 * 120.00192 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99979 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00310 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00304 * 24 22 20 28 28 C 1.53003 * 109.47515 * 299.99966 * 12 11 10 29 29 H 1.08997 * 109.47320 * 270.15776 * 1 2 3 30 30 H 1.09003 * 109.46772 * 30.15111 * 1 2 3 31 31 H 1.08999 * 109.47373 * 150.14986 * 1 2 3 32 32 H 1.07995 * 125.90339 * 179.81378 * 4 3 2 33 33 H 1.07996 * 126.04489 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.46983 * 60.00028 * 9 7 6 35 35 H 1.09000 * 109.47026 * 300.00265 * 9 7 6 36 36 H 1.08996 * 109.47101 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.47270 * 60.00115 * 10 9 7 38 38 H 1.09001 * 109.47130 * 300.00197 * 11 10 9 39 39 H 1.08999 * 109.47287 * 180.02562 * 11 10 9 40 40 H 1.00892 * 111.00303 * 151.04383 * 14 12 11 41 41 H 1.09001 * 109.47271 * 59.99820 * 15 14 12 42 42 H 1.09004 * 109.47041 * 299.99667 * 15 14 12 43 43 H 1.09004 * 109.47059 * 179.97438 * 17 16 15 44 44 H 1.08992 * 109.47060 * 300.00021 * 17 16 15 45 45 H 1.09004 * 109.46930 * 59.99935 * 17 16 15 46 46 H 1.09001 * 109.47375 * 299.99867 * 18 16 15 47 47 H 1.09002 * 109.47045 * 59.99942 * 18 16 15 48 48 H 1.09000 * 109.47140 * 179.97438 * 18 16 15 49 49 H 1.08998 * 109.46509 * 60.00429 * 19 16 15 50 50 H 1.08993 * 109.46955 * 299.99989 * 19 16 15 51 51 H 0.97001 * 119.99934 * 359.97438 * 23 22 20 52 52 H 1.08996 * 109.47448 * 179.97438 * 28 12 11 53 53 H 1.09003 * 109.46930 * 300.00519 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7321 -0.0050 5 6 3.5437 -0.6666 -0.0033 6 6 2.2588 -1.0913 0.0029 7 6 1.7973 -2.5258 0.0060 8 1 0.8012 -2.5860 0.4447 9 6 1.7546 -3.0510 -1.4304 10 6 1.2854 -4.5072 -1.4273 11 6 2.2571 -5.3544 -0.6033 12 6 2.2997 -4.8292 0.8331 13 1 1.3036 -4.8891 1.2717 14 7 3.2332 -5.6422 1.6243 15 6 2.5703 -6.8431 2.1498 16 6 3.5720 -7.6627 2.9658 17 6 4.0943 -6.8179 4.1295 18 6 4.7417 -8.0764 2.0705 19 6 2.8814 -8.9133 3.5137 20 6 3.8681 -9.7209 4.3168 21 1 4.8860 -9.3765 4.4259 22 6 3.4713 -10.8990 4.9133 23 7 2.2319 -11.3182 4.7809 24 14 4.6943 -11.8997 5.9094 25 1 4.0241 -13.1136 6.4411 26 1 5.2021 -11.0794 7.0383 27 1 5.8292 -12.3021 5.0402 28 6 2.7690 -3.3729 0.8301 29 1 -0.3634 0.0028 1.0276 30 1 -0.3633 0.8887 -0.5162 31 1 -0.3634 -0.8913 -0.5115 32 1 4.4054 1.3709 -0.0092 33 1 4.4210 -1.2965 -0.0061 34 1 2.7506 -2.9907 -1.8690 35 1 1.0620 -2.4477 -2.0174 36 1 1.2554 -4.8815 -2.4506 37 1 0.2892 -4.5671 -0.9889 38 1 3.2532 -5.2945 -1.0417 39 1 1.9231 -6.3919 -0.6014 40 1 3.6429 -5.0997 2.3698 41 1 2.1985 -7.4452 1.3207 42 1 1.7367 -6.5484 2.7873 43 1 4.8076 -7.4020 4.7111 44 1 4.5862 -5.9269 3.7395 45 1 3.2609 -6.5232 4.7673 46 1 4.3696 -8.6783 1.2415 47 1 5.2336 -7.1853 1.6805 48 1 5.4555 -8.6600 2.6519 49 1 2.5090 -9.5153 2.6848 50 1 2.0483 -8.6182 4.1516 51 1 1.5967 -10.7983 4.2639 52 1 2.7989 -2.9987 1.8534 53 1 3.7651 -3.3131 0.3916 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367896607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:35 Heat of formation + Delta-G solvation = 20.676331 kcal Electronic energy + Delta-G solvation = -27486.538880 eV Core-core repulsion = 23971.330120 eV Total energy + Delta-G solvation = -3515.208760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30892 -40.08456 -38.66665 -35.64836 -34.37187 -33.95464 -32.93045 -30.24855 -29.30562 -28.40662 -27.96033 -27.59293 -26.54389 -24.62668 -23.99004 -22.76511 -22.10921 -20.80361 -20.25287 -19.73179 -18.45401 -17.85829 -16.78844 -16.37349 -16.19213 -15.95867 -15.80936 -15.55458 -15.46834 -15.10057 -14.99379 -14.67438 -14.30456 -14.25696 -13.84000 -13.69051 -13.59268 -13.41129 -13.27302 -13.19673 -13.10875 -12.88049 -12.75386 -12.54222 -12.30866 -12.18148 -12.02440 -11.95274 -11.73794 -11.72590 -11.53733 -11.42426 -11.27405 -11.23608 -10.98151 -10.47877 -10.40938 -10.18637 -9.44755 -9.30404 -8.59044 -6.26823 0.91002 1.53489 1.61840 1.64136 1.79937 1.90950 2.60233 3.12563 3.23776 3.42821 3.70176 3.79018 3.90406 4.04806 4.11465 4.14366 4.21577 4.29766 4.33597 4.34946 4.40522 4.44859 4.46241 4.54250 4.62431 4.65393 4.67625 4.73624 4.78922 4.84812 4.86380 4.98583 5.02621 5.06626 5.08145 5.12827 5.15040 5.18963 5.30182 5.31518 5.33677 5.36990 5.39206 5.51274 5.53974 5.62328 5.73737 5.75421 6.07604 6.11541 6.21085 6.29368 6.54295 6.68734 6.76294 7.52834 8.81064 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.002292 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.507063 B =12214.190622 C =12570.512182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.381 5.381 3 N -0.339 5.339 4 C 0.039 3.961 5 C -0.283 4.283 6 C 0.093 3.907 7 C -0.013 4.013 8 H 0.087 0.913 9 C -0.100 4.100 10 C -0.112 4.112 11 C -0.106 4.106 12 C 0.090 3.910 13 H 0.035 0.965 14 N -0.677 5.677 15 C 0.086 3.914 16 C -0.048 4.048 17 C -0.121 4.121 18 C -0.105 4.105 19 C 0.023 3.977 20 C -0.588 4.588 21 H 0.058 0.942 22 C -0.047 4.047 23 N -0.946 5.946 24 Si 1.112 2.888 25 H -0.289 1.289 26 H -0.269 1.269 27 H -0.270 1.270 28 C -0.097 4.097 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.204 0.796 33 H 0.157 0.843 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.344 0.656 41 H 0.055 0.945 42 H 0.014 0.986 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.036 0.964 49 H -0.021 1.021 50 H -0.022 1.022 51 H 0.252 0.748 52 H 0.061 0.939 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 23.206 -13.349 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.163 5.163 3 N -0.161 5.161 4 C -0.145 4.145 5 C -0.312 4.312 6 C -0.035 4.035 7 C -0.034 4.034 8 H 0.105 0.895 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.144 4.144 12 C -0.020 4.020 13 H 0.053 0.947 14 N -0.310 5.310 15 C -0.044 4.044 16 C -0.049 4.049 17 C -0.179 4.179 18 C -0.162 4.162 19 C -0.014 4.014 20 C -0.626 4.626 21 H 0.076 0.924 22 C -0.243 4.243 23 N -0.585 5.585 24 Si 0.934 3.066 25 H -0.214 1.214 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.135 4.135 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.221 0.779 33 H 0.175 0.825 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.164 0.836 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.055 0.945 49 H -0.003 1.003 50 H -0.004 1.004 51 H 0.062 0.938 52 H 0.080 0.920 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.609 22.566 -12.998 26.092 hybrid contribution -0.662 0.730 0.014 0.985 sum -2.271 23.296 -12.984 26.766 Atomic orbital electron populations 1.22122 0.73064 1.05683 1.04296 1.48768 1.07492 1.03108 1.56969 1.77301 1.02855 1.09210 1.26713 1.24293 0.95476 0.95822 0.98940 1.21505 0.97006 0.95039 1.17650 1.21282 0.91464 0.90429 1.00316 1.19744 0.99827 0.85985 0.97826 0.89512 1.21502 1.02476 0.95786 0.93991 1.21495 0.98758 0.94193 1.00526 1.21510 1.00303 0.98507 0.94078 1.21521 0.93783 0.92051 0.94602 0.94731 1.60518 1.34053 1.08106 1.28296 1.21809 0.94302 0.91895 0.96359 1.20373 0.95532 0.94111 0.94873 1.21678 1.00119 0.98879 0.97204 1.21483 0.97077 1.00180 0.97479 1.19189 0.94893 0.93601 0.93746 1.22388 0.98254 1.08459 1.33514 0.92400 1.27307 1.00052 0.98323 0.98602 1.70917 1.04888 1.41472 1.41242 0.82990 0.73129 0.74870 0.75572 1.21437 1.19469 1.19518 1.21593 0.99747 0.92300 0.99895 0.90084 0.88737 0.87590 0.77946 0.82521 0.91267 0.91251 0.90627 0.91653 0.91396 0.93597 0.83586 0.92640 0.96824 0.93623 0.91072 0.94738 0.95291 0.91025 0.94517 1.00272 1.00353 0.93846 0.91993 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 11.06 127.77 1.41 2.38 16 2 N -0.38 -7.05 4.01 -356.02 -1.43 -8.47 16 3 N -0.34 -7.55 12.58 -57.02 -0.72 -8.27 16 4 C 0.04 0.73 12.03 85.24 1.03 1.76 16 5 C -0.28 -5.06 9.98 21.99 0.22 -4.84 16 6 C 0.09 1.62 5.86 41.41 0.24 1.86 16 7 C -0.01 -0.18 2.20 -11.54 -0.03 -0.21 16 8 H 0.09 1.12 7.51 -2.39 -0.02 1.10 16 9 C -0.10 -1.28 5.19 30.59 0.16 -1.12 16 10 C -0.11 -1.58 5.92 30.59 0.18 -1.39 16 11 C -0.11 -2.05 5.42 30.59 0.17 -1.88 16 12 C 0.09 1.83 2.49 44.92 0.11 1.94 16 13 H 0.03 0.76 7.80 -2.39 -0.02 0.74 16 14 N -0.68 -17.15 5.52 -491.56 -2.71 -19.86 16 15 C 0.09 2.83 4.45 86.30 0.38 3.21 16 16 C -0.05 -1.90 0.60 -52.18 -0.03 -1.93 16 17 C -0.12 -4.36 7.89 71.98 0.57 -3.79 16 18 C -0.10 -3.96 8.06 71.98 0.58 -3.38 16 19 C 0.02 1.19 3.35 29.85 0.10 1.29 16 20 C -0.59 -32.81 7.65 25.60 0.20 -32.62 16 21 H 0.06 3.12 5.68 -2.91 -0.02 3.11 16 22 C -0.05 -2.72 5.46 84.65 0.46 -2.25 16 23 N -0.95 -59.58 13.65 21.45 0.29 -59.29 16 24 Si 1.11 50.79 29.90 68.60 2.05 52.85 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 C -0.10 -1.59 4.06 30.60 0.12 -1.46 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.70 7.55 -2.39 -0.02 0.69 16 32 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.16 2.37 7.37 -2.91 -0.02 2.34 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.06 7.46 -2.39 -0.02 1.04 16 40 H 0.34 8.19 6.39 -89.70 -0.57 7.62 16 41 H 0.06 1.94 7.44 -2.39 -0.02 1.92 16 42 H 0.01 0.47 8.06 -2.38 -0.02 0.45 16 43 H 0.04 1.81 6.62 -2.39 -0.02 1.80 16 44 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 45 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 48 H 0.04 1.50 6.62 -2.39 -0.02 1.48 16 49 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 50 H -0.02 -1.22 8.01 -2.39 -0.02 -1.24 16 51 H 0.25 16.13 7.22 -92.71 -0.67 15.46 16 52 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 53 H 0.08 1.35 7.28 -2.39 -0.02 1.33 16 Total: -1.00 -69.99 401.27 3.75 -66.23 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.39 Total: 19.25 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 5.88 Total: -42.43 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -4.57 Total: -95.90 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Total: -69.99 3.75 -66.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367896607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.911 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds