Wall clock time and date at job start Tue Mar 31 2020 12:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47596 * 2 1 4 4 C 1.52999 * 109.47533 * 239.99870 * 2 1 3 5 5 C 1.52999 * 109.47480 * 174.99998 * 4 2 1 6 6 O 1.42896 * 109.47317 * 180.02562 * 5 4 2 7 7 C 1.42896 * 114.00241 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47086 * 179.97438 * 7 6 5 9 9 C 1.38239 * 119.99863 * 269.72557 * 8 7 6 10 10 C 1.38229 * 119.99889 * 179.76653 * 9 8 7 11 11 C 1.38239 * 120.00123 * 0.51318 * 10 9 8 12 12 C 1.38235 * 119.99749 * 359.74132 * 11 10 9 13 13 C 1.38228 * 119.99960 * 0.02562 * 12 11 10 14 14 N 1.46902 * 109.47251 * 119.99920 * 2 1 3 15 15 C 1.46898 * 111.00157 * 275.00398 * 14 2 1 16 16 C 1.52997 * 109.47123 * 179.97438 * 15 14 2 17 17 C 1.53006 * 109.47164 * 299.99884 * 16 15 14 18 18 C 1.52999 * 109.47592 * 59.99590 * 16 15 14 19 19 C 1.52997 * 109.47232 * 179.97438 * 16 15 14 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 16 15 21 21 H 1.07998 * 120.00129 * 359.97438 * 20 19 16 22 22 C 1.37880 * 119.99861 * 180.02562 * 20 19 16 23 23 N 1.31520 * 119.99850 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00180 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47117 * 90.00278 * 24 22 20 26 26 H 1.48501 * 109.47010 * 210.00349 * 24 22 20 27 27 H 1.48500 * 109.47001 * 330.00215 * 24 22 20 28 28 H 1.09001 * 109.47056 * 59.99873 * 1 2 3 29 29 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47102 * 299.99825 * 1 2 3 31 31 H 1.09000 * 109.47436 * 295.00652 * 4 2 1 32 32 H 1.09001 * 109.46636 * 55.00041 * 4 2 1 33 33 H 1.08999 * 109.47233 * 300.00179 * 5 4 2 34 34 H 1.08996 * 109.46851 * 59.99988 * 5 4 2 35 35 H 1.08997 * 109.47192 * 299.99943 * 7 6 5 36 36 H 1.09003 * 109.47008 * 59.99965 * 7 6 5 37 37 H 1.08001 * 120.00010 * 359.97438 * 9 8 7 38 38 H 1.08002 * 120.00392 * 180.23169 * 10 9 8 39 39 H 1.07997 * 120.00333 * 179.72881 * 11 10 9 40 40 H 1.08000 * 120.00004 * 179.97438 * 12 11 10 41 41 H 1.08008 * 120.00164 * 179.97438 * 13 12 11 42 42 H 1.00909 * 110.99603 * 38.95478 * 14 2 1 43 43 H 1.09001 * 109.47062 * 59.99599 * 15 14 2 44 44 H 1.09002 * 109.46774 * 299.99237 * 15 14 2 45 45 H 1.09001 * 109.46801 * 180.02562 * 17 16 15 46 46 H 1.09001 * 109.46998 * 299.99705 * 17 16 15 47 47 H 1.09000 * 109.47050 * 59.99996 * 17 16 15 48 48 H 1.09000 * 109.47160 * 300.00333 * 18 16 15 49 49 H 1.09002 * 109.46719 * 60.00054 * 18 16 15 50 50 H 1.08993 * 109.47839 * 179.97438 * 18 16 15 51 51 H 1.09002 * 109.47153 * 299.99992 * 19 16 15 52 52 H 1.09001 * 109.47289 * 60.00075 * 19 16 15 53 53 H 0.97002 * 119.99994 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 8 4.0412 -1.2864 -2.4806 7 6 5.4610 -1.2446 -2.6370 8 6 5.8500 -1.9816 -3.8926 9 6 6.1328 -3.3338 -3.8409 10 6 6.4849 -4.0108 -4.9934 11 6 6.5646 -3.3335 -6.1959 12 6 6.2868 -1.9803 -6.2467 13 6 5.9300 -1.3043 -5.0950 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 6 2.5950 -0.5332 3.5745 17 6 1.6451 -1.6890 3.8952 18 6 3.9920 -1.0864 3.2863 19 6 2.6609 0.4199 4.7694 20 6 3.1652 -0.3246 5.9787 21 1 3.4134 -1.3730 5.9027 22 6 3.3087 0.3323 7.1824 23 7 3.7484 -0.3177 8.2379 24 14 2.8787 2.1453 7.3142 25 1 1.4492 2.2890 7.6897 26 1 3.7295 2.7817 8.3517 27 1 3.1157 2.8065 6.0058 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4259 35 1 5.7883 -0.2074 -2.7079 36 1 5.9353 -1.7173 -1.7769 37 1 6.0754 -3.8619 -2.9006 38 1 6.7023 -5.0680 -4.9538 39 1 6.8439 -3.8616 -7.0957 40 1 6.3494 -1.4511 -7.1861 41 1 5.7134 -0.2469 -5.1346 42 1 1.4495 -1.4980 1.4100 43 1 1.0870 0.6163 2.5525 44 1 2.7588 1.0461 2.1183 45 1 2.0101 -2.2272 4.7700 46 1 0.6498 -1.2950 4.1006 47 1 1.5985 -2.3680 3.0438 48 1 3.9455 -1.7654 2.4349 49 1 4.6688 -0.2630 3.0578 50 1 4.3574 -1.6244 4.1609 51 1 3.3379 1.2431 4.5407 52 1 1.6658 0.8143 4.9750 53 1 3.8497 0.1446 9.0847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389916985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:02 Heat of formation + Delta-G solvation = -63.211569 kcal Electronic energy + Delta-G solvation = -26479.684445 eV Core-core repulsion = 22928.545281 eV Total energy + Delta-G solvation = -3551.139163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.28777 -39.62765 -38.58687 -37.01774 -34.51423 -33.15467 -31.86889 -31.78830 -29.90423 -29.20444 -27.90783 -26.88506 -26.47072 -24.26635 -23.51328 -23.47200 -22.26919 -21.49000 -19.41723 -18.86466 -17.82161 -17.34647 -17.20068 -16.53600 -16.46058 -16.13492 -16.03271 -15.68903 -15.38278 -15.07574 -14.86599 -14.51342 -14.28683 -14.17250 -14.10335 -13.83313 -13.63444 -13.57108 -13.42397 -13.14299 -12.84533 -12.77216 -12.54041 -12.42200 -12.24137 -12.19633 -12.05633 -11.98942 -11.86678 -11.80847 -11.69511 -11.66484 -11.34750 -10.95865 -10.77908 -10.69877 -10.50571 -9.82271 -9.75558 -9.18485 -8.21608 -6.21725 0.34865 0.50062 1.35045 1.37150 1.48109 2.39253 2.61125 3.13260 3.13442 3.30682 3.85602 3.91839 4.06440 4.14481 4.15398 4.18432 4.26455 4.28659 4.31176 4.34931 4.38915 4.45069 4.52623 4.60245 4.67411 4.71226 4.75214 4.77222 4.82068 4.92055 4.93522 5.03225 5.06731 5.08213 5.08899 5.15903 5.19513 5.24715 5.26197 5.32395 5.39241 5.45828 5.54325 5.55405 5.61132 5.63851 5.68197 5.77513 5.83475 6.10048 6.20780 6.30575 6.42862 6.59126 6.85806 7.40544 8.94562 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.002129 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.486690 B =13148.393114 C =13886.596711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.076 0.924 4 C -0.093 4.093 5 C 0.069 3.931 6 O -0.402 6.402 7 C 0.102 3.898 8 C -0.107 4.107 9 C -0.116 4.116 10 C -0.131 4.131 11 C -0.122 4.122 12 C -0.130 4.130 13 C -0.113 4.113 14 N -0.682 5.682 15 C 0.082 3.918 16 C -0.049 4.049 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.003 4.003 20 C -0.502 4.502 21 H 0.044 0.956 22 C -0.002 4.002 23 N -0.955 5.955 24 Si 0.941 3.059 25 H -0.271 1.271 26 H -0.289 1.289 27 H -0.249 1.249 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.125 0.875 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.344 0.656 43 H 0.028 0.972 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.037 0.963 50 H 0.025 0.975 51 H 0.013 0.987 52 H 0.011 0.989 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -1.481 -30.741 30.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.094 0.906 4 C -0.131 4.131 5 C -0.007 4.007 6 O -0.323 6.323 7 C 0.026 3.974 8 C -0.107 4.107 9 C -0.135 4.135 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.148 4.148 13 C -0.131 4.131 14 N -0.314 5.314 15 C -0.047 4.047 16 C -0.049 4.049 17 C -0.181 4.181 18 C -0.165 4.165 19 C -0.041 4.041 20 C -0.540 4.540 21 H 0.062 0.938 22 C -0.197 4.197 23 N -0.597 5.597 24 Si 0.766 3.234 25 H -0.196 1.196 26 H -0.215 1.215 27 H -0.173 1.173 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.164 0.836 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.045 0.955 51 H 0.031 0.969 52 H 0.029 0.971 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.692 -1.464 -30.863 30.906 hybrid contribution -0.719 0.856 1.522 1.888 sum -0.027 -0.608 -29.342 29.348 Atomic orbital electron populations 1.22410 0.96027 1.02558 1.02466 1.21499 0.93339 0.97803 0.89690 0.90552 1.21388 0.93209 1.01474 0.97006 1.22478 0.95654 0.95643 0.86970 1.87874 1.21301 1.77445 1.45649 1.21334 0.81876 0.99286 0.94950 1.19813 1.01184 0.94732 0.94963 1.21298 0.98853 0.93788 0.99512 1.21458 0.99852 1.01023 0.92578 1.21554 0.98956 0.94807 0.98621 1.21472 0.99416 0.95112 0.98771 1.21295 0.98929 1.00723 0.92194 1.60621 1.57565 1.09752 1.03473 1.21860 0.98632 0.94712 0.89536 1.20358 0.95861 0.95454 0.93259 1.21691 0.98120 0.97804 1.00492 1.21499 0.95423 0.99902 0.99672 1.19597 0.95525 0.95307 0.93651 1.21439 1.41532 0.97177 0.93888 0.93820 1.25952 0.95357 1.02744 0.95674 1.70071 1.49493 1.38523 1.01581 0.85786 0.78356 0.80654 0.78587 1.19623 1.21534 1.17253 0.90924 0.92013 0.93113 0.91655 0.90560 0.93574 0.92676 0.91811 0.92432 0.85718 0.84126 0.83680 0.83798 0.85149 0.83614 0.95380 0.91755 0.94712 0.93719 0.91559 0.91544 0.94400 0.95550 0.96918 0.97081 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.16 71.98 0.66 -2.33 16 2 C 0.09 1.68 2.59 44.91 0.12 1.80 16 3 H 0.08 1.51 7.80 -2.39 -0.02 1.49 16 4 C -0.09 -1.76 5.26 30.59 0.16 -1.60 16 5 C 0.07 1.47 5.83 71.98 0.42 1.89 16 6 O -0.40 -9.47 10.33 -148.98 -1.54 -11.01 16 7 C 0.10 2.05 6.06 71.24 0.43 2.48 16 8 C -0.11 -2.12 5.51 -19.86 -0.11 -2.23 16 9 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 10 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 11 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 12 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 13 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 14 N -0.68 -16.15 4.91 -491.58 -2.42 -18.56 16 15 C 0.08 2.37 4.45 86.30 0.38 2.76 16 16 C -0.05 -1.80 0.60 -52.18 -0.03 -1.83 16 17 C -0.12 -4.38 7.89 71.98 0.57 -3.82 16 18 C -0.11 -4.02 8.06 71.98 0.58 -3.44 16 19 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 20 C -0.50 -28.23 8.20 25.60 0.21 -28.02 16 21 H 0.04 2.70 5.92 -2.91 -0.02 2.68 16 22 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 23 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 24 Si 0.94 44.78 27.47 68.60 1.88 46.67 16 25 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.06 1.13 8.09 -2.39 -0.02 1.11 16 36 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 37 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 41 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.34 7.93 6.51 -89.69 -0.58 7.34 16 43 H 0.03 0.80 7.44 -2.39 -0.02 0.78 16 44 H 0.06 1.89 8.06 -2.39 -0.02 1.88 16 45 H 0.03 1.45 6.62 -2.39 -0.02 1.44 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.92 6.57 -2.39 -0.02 1.91 16 48 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 49 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.03 1.13 6.62 -2.39 -0.02 1.11 16 51 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 52 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 53 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -66.54 414.01 3.49 -63.05 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.21 Total: 22.37 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 5.05 Total: -42.57 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.12 Total: -78.52 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.54 Total: -11.01 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -66.54 3.49 -63.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389916985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.160 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds