Wall clock time and date at job start Tue Mar 31 2020 12:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46750 * 2 1 4 4 C 1.52995 * 109.47123 * 119.99862 * 2 1 3 5 5 C 1.53006 * 109.46994 * 83.18836 * 4 2 1 6 6 C 1.53004 * 109.47055 * 302.75350 * 5 4 2 7 7 C 1.52997 * 109.47006 * 182.75371 * 5 4 2 8 8 C 1.53000 * 109.47127 * 62.75013 * 5 4 2 9 9 N 1.46894 * 109.47096 * 179.97438 * 8 5 4 10 10 C 1.46903 * 111.00009 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47088 * 325.00185 * 10 9 8 12 12 C 1.52997 * 109.47124 * 84.99960 * 10 9 8 13 13 C 1.50695 * 109.47292 * 205.00415 * 10 9 8 14 14 C 1.38310 * 119.92839 * 319.72726 * 13 10 9 15 15 C 1.38096 * 120.06718 * 179.72802 * 14 13 10 16 16 C 1.38888 * 119.93163 * 0.54154 * 15 14 13 17 17 O 1.35750 * 120.06900 * 179.74653 * 16 15 14 18 18 C 1.34830 * 116.99831 * 174.42582 * 17 16 15 19 19 H 1.07999 * 120.00050 * 5.05323 * 18 17 16 20 20 C 1.38651 * 119.99846 * 185.05780 * 18 17 16 21 21 N 1.31559 * 120.00427 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47340 * 59.99861 * 22 20 18 24 24 H 1.48504 * 109.47330 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47296 * 299.99640 * 22 20 18 26 26 C 1.38877 * 119.85955 * 359.73039 * 16 15 14 27 27 C 1.38103 * 119.93474 * 359.97438 * 26 16 15 28 28 H 1.08991 * 109.47652 * 305.63991 * 1 2 3 29 29 H 1.09008 * 109.46893 * 65.64283 * 1 2 3 30 30 H 1.09002 * 109.46967 * 185.63687 * 1 2 3 31 31 H 1.09003 * 109.47332 * 240.00352 * 2 1 3 32 32 H 1.08997 * 109.47013 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47177 * 299.99990 * 3 2 1 34 34 H 1.09003 * 109.46915 * 60.00097 * 3 2 1 35 35 H 1.08998 * 109.47134 * 323.19237 * 4 2 1 36 36 H 1.08992 * 109.47558 * 203.18845 * 4 2 1 37 37 H 1.09001 * 109.46623 * 189.64571 * 6 5 4 38 38 H 1.08996 * 109.47008 * 309.64411 * 6 5 4 39 39 H 1.09000 * 109.47253 * 69.64445 * 6 5 4 40 40 H 1.08998 * 109.46947 * 295.00449 * 7 5 4 41 41 H 1.09000 * 109.47366 * 55.00951 * 7 5 4 42 42 H 1.09005 * 109.46948 * 175.01111 * 7 5 4 43 43 H 1.09000 * 109.46839 * 59.99882 * 8 5 4 44 44 H 1.08998 * 109.47162 * 300.00288 * 8 5 4 45 45 H 1.00904 * 110.99946 * 56.05077 * 9 8 5 46 46 H 1.09001 * 109.46954 * 60.00143 * 12 10 9 47 47 H 1.08996 * 109.47076 * 180.02562 * 12 10 9 48 48 H 1.08998 * 109.47402 * 300.00047 * 12 10 9 49 49 H 1.07997 * 119.96309 * 359.97438 * 14 13 10 50 50 H 1.07997 * 120.03658 * 180.26879 * 15 14 13 51 51 H 0.96998 * 120.00193 * 180.02562 * 21 20 18 52 52 H 1.07998 * 120.03664 * 179.97438 * 26 16 15 53 53 H 1.07996 * 119.96653 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0487 -2.2306 0.9989 6 6 0.6415 -2.6918 0.6141 7 6 2.4932 -2.9559 2.2705 8 6 3.0199 -2.5534 -0.1384 9 7 3.0287 -4.0025 -0.3784 10 6 3.9528 -4.3505 -1.4660 11 1 3.9425 -3.5614 -2.2179 12 6 5.3680 -4.5012 -0.9043 13 6 3.5212 -5.6498 -2.0956 14 6 3.0641 -6.6841 -1.2993 15 6 2.6625 -7.8741 -1.8736 16 6 2.7287 -8.0356 -3.2515 17 8 2.3395 -9.2059 -3.8186 18 6 2.3195 -9.2564 -5.1658 19 1 2.6824 -8.4189 -5.7430 20 6 1.8330 -10.3836 -5.8101 21 7 1.3912 -11.4041 -5.1070 22 14 1.8046 -10.4533 -7.6766 23 1 3.1876 -10.3107 -8.1984 24 1 1.2426 -11.7562 -8.1148 25 1 0.9615 -9.3487 -8.2005 26 6 3.1935 -6.9971 -4.0479 27 6 3.5878 -5.8073 -3.4680 28 1 -0.3634 0.5987 0.8351 29 1 -0.3633 0.4239 -0.9363 30 1 -0.3633 -1.0227 0.1009 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.3854 -0.4964 2.0912 36 1 3.0517 -0.3847 1.4755 37 1 0.6067 -3.7812 0.6030 38 1 -0.0766 -2.3127 1.3411 39 1 0.3921 -2.3102 -0.3760 40 1 3.5274 -2.6948 2.4950 41 1 1.8543 -2.6570 3.1015 42 1 2.4147 -4.0328 2.1209 43 1 4.0224 -2.2247 0.1357 44 1 2.7032 -2.0366 -1.0444 45 1 2.0985 -4.3428 -0.5711 46 1 5.3783 -5.2903 -0.1524 47 1 6.0537 -4.7589 -1.7114 48 1 5.6802 -3.5614 -0.4490 49 1 3.0174 -6.5596 -0.2275 50 1 2.3016 -8.6798 -1.2517 51 1 1.0512 -12.1928 -5.5578 52 1 3.2465 -7.1197 -5.1196 53 1 3.9490 -4.9993 -4.0869 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391128680.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:33 Heat of formation + Delta-G solvation = -40.348199 kcal Electronic energy + Delta-G solvation = -27198.658759 eV Core-core repulsion = 23648.511026 eV Total energy + Delta-G solvation = -3550.147733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91463 -40.08889 -38.73595 -36.55564 -34.66680 -34.14735 -31.84762 -31.19126 -29.34120 -29.12264 -27.55615 -27.36055 -27.05020 -25.91210 -23.80830 -23.23006 -21.30302 -21.18610 -19.75754 -19.55650 -18.80736 -17.07921 -16.77375 -16.37620 -16.28457 -15.80583 -15.57717 -15.51974 -15.32179 -15.11991 -14.74382 -14.50960 -14.36459 -14.14097 -13.99161 -13.67288 -13.52488 -13.41638 -13.10234 -13.04091 -12.88665 -12.82641 -12.64680 -12.62202 -12.49276 -12.45231 -12.34633 -12.16776 -12.11723 -11.69215 -11.57634 -11.50221 -11.26316 -11.17320 -11.07449 -10.79018 -10.77074 -9.76503 -9.20146 -8.90044 -8.46819 -6.15055 0.61115 0.69777 1.34419 1.45112 1.50699 2.17745 2.81975 3.15426 3.32611 3.53229 3.82388 3.87054 3.97309 4.06180 4.13176 4.19516 4.23733 4.31976 4.35727 4.44646 4.60476 4.63254 4.66950 4.76382 4.76651 4.81252 4.83719 4.92037 4.94736 4.97246 5.00276 5.03084 5.06896 5.10734 5.13973 5.14372 5.17312 5.20531 5.24822 5.30818 5.33150 5.41240 5.46509 5.54696 5.58217 5.60728 5.63249 5.67864 5.72164 5.76305 6.03189 6.22302 6.30735 6.55447 6.97750 7.79229 8.76215 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002377 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.296360 B =11776.621994 C =12104.703271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.055 4.055 6 C -0.150 4.150 7 C -0.127 4.127 8 C 0.070 3.930 9 N -0.681 5.681 10 C 0.146 3.854 11 H 0.049 0.951 12 C -0.128 4.128 13 C -0.163 4.163 14 C -0.044 4.044 15 C -0.205 4.205 16 C 0.114 3.886 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.242 4.242 27 C -0.065 4.065 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.341 0.659 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.145 0.855 50 H 0.110 0.890 51 H 0.273 0.727 52 H 0.117 0.883 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 24.662 11.237 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.055 4.055 6 C -0.207 4.207 7 C -0.184 4.184 8 C -0.059 4.059 9 N -0.313 5.313 10 C 0.037 3.963 11 H 0.067 0.933 12 C -0.186 4.186 13 C -0.164 4.164 14 C -0.062 4.062 15 C -0.224 4.224 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.261 4.261 27 C -0.083 4.083 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.161 0.839 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.163 0.837 50 H 0.129 0.871 51 H 0.081 0.919 52 H 0.135 0.865 53 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.720 24.129 11.811 27.002 hybrid contribution -0.659 -0.379 -1.709 1.871 sum 2.062 23.750 10.101 25.891 Atomic orbital electron populations 1.22399 0.95455 1.03574 1.01262 1.21204 0.95957 0.96164 0.98546 1.21852 1.00897 0.95918 1.01635 1.21672 1.01366 0.92984 0.97519 1.20502 0.94586 0.95208 0.95244 1.22205 0.96277 1.00741 1.01447 1.21688 1.00459 1.00512 0.95751 1.22150 0.99610 0.87266 0.96833 1.60632 1.13026 1.14017 1.43632 1.20141 0.93589 0.91580 0.91009 0.93267 1.21721 0.94231 1.01982 1.00625 1.19764 1.06620 0.97230 0.92750 1.20747 0.95026 0.90353 1.00115 1.20483 1.10139 1.00400 0.91422 1.19952 0.93594 0.86329 0.93791 1.83944 1.76768 1.30042 1.23195 1.21765 1.43850 1.04507 0.78857 0.88199 1.26587 0.95354 0.93949 1.06195 1.70179 1.40962 1.06253 1.38518 0.84661 0.79653 0.78499 0.73485 1.18171 1.19613 1.18189 1.21206 1.09363 0.95425 1.00145 1.20930 0.96783 0.95772 0.94822 0.92770 0.93566 0.90409 0.91639 0.92625 0.93050 0.92554 0.91491 0.91724 0.93253 0.91738 0.92113 0.93094 0.93091 0.92659 0.91037 0.95164 0.83947 0.92807 0.92910 0.91704 0.83709 0.87143 0.91850 0.86488 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.62 71.98 0.62 -1.62 16 2 C -0.10 -1.31 2.45 -10.79 -0.03 -1.34 16 3 C -0.15 -1.73 9.08 71.98 0.65 -1.07 16 4 C -0.10 -1.24 4.01 30.59 0.12 -1.11 16 5 C -0.06 -0.81 0.62 -52.18 -0.03 -0.84 16 6 C -0.15 -2.33 6.09 71.98 0.44 -1.89 16 7 C -0.13 -1.98 8.23 71.98 0.59 -1.39 16 8 C 0.07 1.18 4.20 86.30 0.36 1.54 16 9 N -0.68 -13.90 5.01 -495.47 -2.48 -16.38 16 10 C 0.15 3.37 2.81 44.17 0.12 3.50 16 11 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 12 C -0.13 -2.74 9.39 71.98 0.68 -2.06 16 13 C -0.16 -4.98 4.71 -19.83 -0.09 -5.07 16 14 C -0.04 -1.49 9.00 22.25 0.20 -1.29 16 15 C -0.21 -8.82 9.99 22.39 0.22 -8.59 16 16 C 0.11 5.70 6.65 22.58 0.15 5.85 16 17 O -0.23 -14.17 9.76 -22.74 -0.22 -14.39 16 18 C -0.41 -24.30 9.49 67.92 0.64 -23.65 16 19 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 20 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 21 N -0.92 -56.99 13.67 21.61 0.30 -56.70 16 22 Si 1.02 43.08 29.55 68.60 2.03 45.11 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 C -0.24 -10.57 9.17 22.39 0.21 -10.36 16 27 C -0.06 -2.21 9.66 22.25 0.21 -2.00 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.08 1.05 3.74 -2.39 -0.01 1.04 16 31 H 0.07 0.98 5.76 -2.39 -0.01 0.96 16 32 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.83 7.94 -2.39 -0.02 0.81 16 36 H 0.06 0.80 7.92 -2.39 -0.02 0.78 16 37 H 0.05 0.87 7.04 -2.39 -0.02 0.85 16 38 H 0.06 0.91 7.39 -2.39 -0.02 0.89 16 39 H 0.06 0.97 6.00 -2.39 -0.01 0.95 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 1.02 7.74 -2.38 -0.02 1.00 16 43 H 0.07 1.18 7.43 -2.39 -0.02 1.17 16 44 H 0.03 0.53 6.04 -2.39 -0.01 0.51 16 45 H 0.34 7.58 6.27 -89.69 -0.56 7.02 16 46 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.06 1.17 7.45 -2.39 -0.02 1.16 16 49 H 0.15 4.16 7.72 -2.91 -0.02 4.13 16 50 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 51 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 52 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 53 H 0.14 3.79 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -66.55 403.57 5.48 -61.07 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.32 Total: 33.58 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 5.54 Total: -52.28 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -2.19 Total: -73.08 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.22 Total: -14.39 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.55 5.48 -61.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391128680.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.720 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds