Wall clock time and date at job start Tue Mar 31 2020 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00112 * 3 2 1 5 5 H 1.48505 * 109.47175 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.47465 * 150.00028 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99785 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.38221 * 119.99530 * 269.72556 * 12 11 10 14 14 C 1.38342 * 119.99477 * 179.74817 * 13 12 11 15 15 Cl 1.73600 * 120.00434 * 180.27046 * 14 13 12 16 16 C 1.38373 * 119.99022 * 0.54651 * 14 13 12 17 17 C 1.38184 * 119.99909 * 359.70576 * 16 14 13 18 18 C 1.38303 * 119.99853 * 90.00035 * 12 11 10 19 19 Br 1.89094 * 119.99793 * 359.97438 * 18 12 11 20 20 H 0.96993 * 120.00403 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46640 * 60.00582 * 9 7 2 22 22 H 1.09000 * 109.47094 * 300.01049 * 9 7 2 23 23 H 1.09002 * 109.47085 * 299.99903 * 11 10 9 24 24 H 1.09001 * 109.47417 * 60.00029 * 11 10 9 25 25 H 1.07994 * 120.00634 * 359.97438 * 13 12 11 26 26 H 1.08001 * 120.00281 * 179.68070 * 16 14 13 27 27 H 1.08005 * 119.99854 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 6 1.3518 -5.3366 -0.0013 12 6 2.1958 -6.5851 -0.0020 13 6 2.5780 -7.1602 -1.1994 14 6 3.3572 -8.3033 -1.2001 15 17 3.8433 -9.0217 -2.7039 16 6 3.7443 -8.8772 -0.0020 17 6 3.3576 -8.3051 1.1949 18 6 2.5831 -7.1587 1.1954 19 35 2.0542 -6.3758 2.8334 20 1 -0.4850 0.8399 0.0004 21 1 0.6243 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 0.7223 -5.3237 0.8885 24 1 0.7229 -5.3232 -0.8915 25 1 2.2716 -6.7151 -2.1344 26 1 4.3482 -9.7726 -0.0023 27 1 3.6601 -8.7528 2.1301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413019661.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:05 Heat of formation + Delta-G solvation = 4.524378 kcal Electronic energy + Delta-G solvation = -13778.508120 eV Core-core repulsion = 11120.023574 eV Total energy + Delta-G solvation = -2658.484547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 319.933 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61562 -36.72311 -33.16510 -33.09698 -32.13041 -29.33377 -28.56859 -27.05657 -23.16085 -22.74075 -21.57838 -17.20573 -16.44563 -16.13247 -15.55420 -15.31097 -14.67938 -14.09678 -13.90630 -13.44525 -13.10060 -12.73151 -12.41713 -12.08303 -12.00523 -11.81577 -11.58043 -11.09839 -10.88816 -10.73527 -10.56902 -10.20476 -10.07066 -9.61199 -9.05660 -8.86465 -8.62268 -8.57785 -6.69916 -6.20310 -4.24471 0.71713 0.95691 1.57522 1.92736 2.57322 3.25833 3.31524 3.36329 3.44434 3.80085 4.34955 4.45770 4.55103 4.90347 5.01629 5.16996 5.18931 5.39378 5.61888 5.77705 5.88899 5.94142 6.12749 6.41795 7.07818 7.10223 7.74139 7.99737 8.77252 9.38596 10.90948 Molecular weight = 319.93amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.004259 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.091019 B = 6573.085271 C = 7973.760426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.090 3.910 10 S -0.280 6.280 11 C -0.071 4.071 12 C -0.013 4.013 13 C -0.092 4.092 14 C -0.020 4.020 15 Cl -0.066 7.066 16 C -0.113 4.113 17 C -0.079 4.079 18 C -0.079 4.079 19 Br -0.029 7.029 20 H 0.265 0.735 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -19.612 2.140 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.057 4.057 10 S -0.051 6.051 11 C -0.218 4.218 12 C -0.016 4.016 13 C -0.113 4.113 14 C -0.047 4.047 15 Cl -0.037 7.037 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.161 4.161 19 Br 0.057 6.943 20 H 0.075 0.925 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.114 0.886 24 H 0.107 0.893 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.972 -19.182 2.635 19.990 hybrid contribution -0.805 0.649 -0.539 1.166 sum 4.168 -18.533 2.096 19.111 Atomic orbital electron populations 1.69949 1.06124 1.27343 1.49674 1.24953 0.94966 0.99233 0.94655 0.86361 0.79776 0.82233 0.78360 1.20336 1.20971 1.19532 1.20655 0.93466 0.88659 1.52276 0.91475 1.21086 0.93747 0.90727 1.00157 1.86851 1.19833 1.00396 1.98012 1.22423 0.99533 0.93723 1.06151 1.19249 0.96542 0.94605 0.91220 1.20951 0.97526 0.94179 0.98627 1.20953 1.00248 0.96081 0.87431 1.98377 1.90460 1.82833 1.32026 1.20989 1.01194 1.00933 0.90172 1.21020 0.96311 0.93981 0.98606 1.21870 1.03506 0.98379 0.92306 1.96764 1.90152 1.82807 1.24533 0.92495 0.94596 0.94466 0.88617 0.89255 0.83801 0.84230 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 15 7 C -0.51 -14.33 9.13 -34.44 -0.31 -14.65 15 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 15 9 C 0.09 2.30 5.70 36.01 0.21 2.50 15 10 S -0.28 -5.97 21.64 -107.50 -2.33 -8.30 15 11 C -0.07 -1.19 5.61 36.01 0.20 -0.99 15 12 C -0.01 -0.19 5.14 -104.60 -0.54 -0.72 15 13 C -0.09 -1.20 9.48 -39.55 -0.38 -1.57 15 14 C -0.02 -0.23 6.32 -39.49 -0.25 -0.48 15 15 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.20 15 16 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 15 17 C -0.08 -0.86 9.79 -39.56 -0.39 -1.25 15 18 C -0.08 -1.06 6.22 -39.52 -0.25 -1.31 15 19 Br -0.03 -0.40 31.78 -68.01 -2.16 -2.56 15 20 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.04 0.95 8.14 -51.92 -0.42 0.53 15 22 H 0.04 0.99 8.14 -51.92 -0.42 0.57 15 23 H 0.10 1.59 6.65 -51.92 -0.35 1.25 15 24 H 0.09 1.40 8.08 -51.92 -0.42 0.98 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.14 1.06 8.06 -52.49 -0.42 0.64 15 27 H 0.14 1.20 8.06 -52.48 -0.42 0.77 15 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -28.86 290.41 -10.50 -39.37 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -2.42 Total: -3.66 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.19 Total: -18.27 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.74 Total: -25.10 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.33 Total: -8.30 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.20 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.16 Total: -2.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.86 -10.50 -39.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413019661.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.891 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds