Wall clock time and date at job start Tue Mar 31 2020 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00112 * 3 2 1 5 5 H 1.48505 * 109.47175 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.47465 * 150.00028 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00111 * 359.97438 * 7 2 1 10 10 S 1.81397 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.81401 * 102.99785 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47002 * 179.97438 * 11 10 9 13 13 C 1.38221 * 119.99530 * 269.72556 * 12 11 10 14 14 C 1.38342 * 119.99477 * 179.74817 * 13 12 11 15 15 Cl 1.73600 * 120.00434 * 180.27046 * 14 13 12 16 16 C 1.38373 * 119.99022 * 0.54651 * 14 13 12 17 17 C 1.38184 * 119.99909 * 359.70576 * 16 14 13 18 18 C 1.38303 * 119.99853 * 90.00035 * 12 11 10 19 19 Br 1.89094 * 119.99793 * 359.97438 * 18 12 11 20 20 H 0.96993 * 120.00403 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46640 * 60.00582 * 9 7 2 22 22 H 1.09000 * 109.47094 * 300.01049 * 9 7 2 23 23 H 1.09002 * 109.47085 * 299.99903 * 11 10 9 24 24 H 1.09001 * 109.47417 * 60.00029 * 11 10 9 25 25 H 1.07994 * 120.00634 * 359.97438 * 13 12 11 26 26 H 1.08001 * 120.00281 * 179.68070 * 16 14 13 27 27 H 1.08005 * 119.99854 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 6 1.3518 -5.3366 -0.0013 12 6 2.1958 -6.5851 -0.0020 13 6 2.5780 -7.1602 -1.1994 14 6 3.3572 -8.3033 -1.2001 15 17 3.8433 -9.0217 -2.7039 16 6 3.7443 -8.8772 -0.0020 17 6 3.3576 -8.3051 1.1949 18 6 2.5831 -7.1587 1.1954 19 35 2.0542 -6.3758 2.8334 20 1 -0.4850 0.8399 0.0004 21 1 0.6243 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 0.7223 -5.3237 0.8885 24 1 0.7229 -5.3232 -0.8915 25 1 2.2716 -6.7151 -2.1344 26 1 4.3482 -9.7726 -0.0023 27 1 3.6601 -8.7528 2.1301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413019661.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:05 Heat of formation + Delta-G solvation = -9.134867 kcal Electronic energy + Delta-G solvation = -13779.100430 eV Core-core repulsion = 11120.023574 eV Total energy + Delta-G solvation = -2659.076856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 319.933 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58622 -37.60458 -35.29037 -34.15860 -33.13547 -30.68678 -30.33454 -28.23416 -25.19877 -23.73209 -22.63558 -18.73308 -18.02152 -17.16526 -17.09921 -16.46083 -16.42974 -15.26811 -15.00313 -14.68892 -14.58853 -14.38907 -14.15217 -13.75743 -13.11040 -12.89304 -12.75809 -12.59514 -12.53376 -12.11802 -11.95696 -11.61817 -11.52421 -11.15110 -10.75928 -10.74418 -10.01027 -9.60793 -8.44830 -8.33294 -6.46244 -0.29830 -0.02374 0.55788 1.01140 1.13128 1.40050 1.40789 1.53309 1.98010 2.36179 2.43359 3.01393 3.38540 3.58092 3.91207 4.03607 4.20514 4.31125 4.52961 4.74067 4.85599 4.94991 4.96198 5.03656 5.08252 5.48610 5.56954 5.88731 6.60950 7.21637 8.78606 Molecular weight = 319.93amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.004259 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.091019 B = 6573.085271 C = 7973.760426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.092 3.908 10 S -0.285 6.285 11 C -0.056 4.056 12 C -0.037 4.037 13 C -0.097 4.097 14 C -0.024 4.024 15 Cl -0.055 7.055 16 C -0.096 4.096 17 C -0.073 4.073 18 C -0.088 4.088 19 Br -0.041 7.041 20 H 0.270 0.730 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.145 0.855 26 H 0.174 0.826 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -21.013 2.081 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.055 4.055 10 S -0.056 6.056 11 C -0.203 4.203 12 C -0.040 4.040 13 C -0.118 4.118 14 C -0.051 4.051 15 Cl -0.026 7.026 16 C -0.116 4.116 17 C -0.093 4.093 18 C -0.170 4.170 19 Br 0.046 6.954 20 H 0.079 0.921 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.163 0.837 26 H 0.191 0.809 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 6.450 -20.587 2.571 21.726 hybrid contribution -1.245 0.876 -0.554 1.620 sum 5.205 -19.711 2.017 20.486 Atomic orbital electron populations 1.70052 1.07634 1.28533 1.50128 1.25884 0.95858 1.02943 0.93841 0.85308 0.78498 0.77652 0.78800 1.19357 1.20048 1.19034 1.20967 0.93388 0.90186 1.52784 0.92061 1.20747 0.94160 0.92649 0.97980 1.86611 1.19926 1.01062 1.97995 1.22384 0.99051 0.92428 1.06450 1.19060 0.98163 0.94328 0.92451 1.20998 0.97824 0.94864 0.98134 1.21062 0.99864 0.95684 0.88534 1.98387 1.90237 1.82458 1.31470 1.21395 0.99867 1.01208 0.89115 1.21360 0.94978 0.92784 1.00181 1.22019 1.04230 0.99362 0.91385 1.96759 1.90367 1.83234 1.25081 0.92091 0.96611 0.96728 0.88813 0.88573 0.83734 0.80890 0.81314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.29 21.45 0.28 -54.24 15 2 C 0.02 0.88 5.46 84.65 0.46 1.34 15 3 Si 0.97 43.90 29.54 68.60 2.03 45.92 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.53 -30.70 9.13 25.60 0.23 -30.47 15 8 H 0.06 3.51 7.71 -2.91 -0.02 3.49 15 9 C 0.09 4.91 5.70 71.24 0.41 5.32 15 10 S -0.29 -12.40 21.64 -56.49 -1.22 -13.63 15 11 C -0.06 -1.88 5.61 71.24 0.40 -1.48 15 12 C -0.04 -1.03 5.14 -19.85 -0.10 -1.13 15 13 C -0.10 -2.40 9.48 22.29 0.21 -2.19 15 14 C -0.02 -0.50 6.32 22.33 0.14 -0.36 15 15 Cl -0.05 -1.02 28.96 -2.72 -0.08 -1.09 15 16 C -0.10 -1.60 9.83 22.29 0.22 -1.38 15 17 C -0.07 -1.37 9.79 22.28 0.22 -1.15 15 18 C -0.09 -2.24 6.22 22.31 0.14 -2.10 15 19 Br -0.04 -1.10 31.78 -20.37 -0.65 -1.74 15 20 H 0.27 14.85 8.31 -92.71 -0.77 14.08 15 21 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 22 H 0.01 0.82 8.14 -2.39 -0.02 0.80 15 23 H 0.09 3.18 6.65 -2.39 -0.02 3.17 15 24 H 0.10 3.06 8.08 -2.39 -0.02 3.04 15 25 H 0.14 3.47 8.06 -2.91 -0.02 3.44 15 26 H 0.17 1.77 8.06 -2.91 -0.02 1.74 15 27 H 0.17 2.20 8.06 -2.91 -0.02 2.18 15 Total: -1.00 -62.63 290.41 3.87 -58.75 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.18 Total: -0.36 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 2.33 Total: -33.61 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.28 Total: -54.24 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -12.40 SS G_CDS: -1.22 Total: -13.63 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.09 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -0.65 Total: -1.74 kcal Total: -62.63 3.87 -58.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413019661.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.619 kcal (2) G-P(sol) polarization free energy of solvation -62.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds