Wall clock time and date at job start Tue Mar 31 2020 12:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47220 * 2 1 4 4 N 1.46897 * 109.47159 * 239.99726 * 2 1 3 5 5 C 1.46896 * 111.00091 * 85.00198 * 4 2 1 6 6 C 1.52994 * 109.47325 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47337 * 299.99843 * 6 5 4 8 8 C 1.53004 * 109.47089 * 59.99699 * 6 5 4 9 9 C 1.50700 * 109.47649 * 179.97438 * 6 5 4 10 10 H 1.07998 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37881 * 120.00390 * 179.97438 * 9 6 5 12 12 N 1.31511 * 119.99938 * 359.97438 * 11 9 6 13 13 Si 1.86800 * 119.99837 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47314 * 90.00218 * 13 11 9 15 15 H 1.48496 * 109.46747 * 210.00068 * 13 11 9 16 16 H 1.48495 * 109.47011 * 329.99737 * 13 11 9 17 17 C 1.50703 * 109.47058 * 119.99179 * 2 1 3 18 18 C 1.38271 * 119.94044 * 79.73144 * 17 2 1 19 19 C 1.38138 * 120.05694 * 179.72543 * 18 17 2 20 20 C 1.38736 * 119.94092 * 0.52360 * 19 18 17 21 21 O 1.35902 * 120.05637 * 179.72925 * 20 19 18 22 22 C 1.42902 * 116.99730 * 355.74457 * 21 20 19 23 23 C 1.52998 * 109.47330 * 62.90639 * 22 21 20 24 24 C 1.53002 * 109.46976 * 182.90409 * 22 21 20 25 25 C 1.52998 * 109.47241 * 302.90190 * 22 21 20 26 26 C 1.38740 * 119.88897 * 359.74647 * 20 19 18 27 27 C 1.38139 * 119.94131 * 0.02562 * 26 20 19 28 28 H 1.08996 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46987 * 300.00512 * 1 2 3 30 30 H 1.09000 * 109.46949 * 60.00545 * 1 2 3 31 31 H 1.00902 * 111.00113 * 208.95248 * 4 2 1 32 32 H 1.08999 * 109.47762 * 59.99518 * 5 4 2 33 33 H 1.09008 * 109.47025 * 299.99563 * 5 4 2 34 34 H 1.08998 * 109.47174 * 59.99637 * 7 6 5 35 35 H 1.09001 * 109.47388 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.46554 * 300.00175 * 7 6 5 37 37 H 1.08994 * 109.47057 * 60.00361 * 8 6 5 38 38 H 1.09001 * 109.47357 * 180.02562 * 8 6 5 39 39 H 1.08998 * 109.46933 * 300.00064 * 8 6 5 40 40 H 0.96995 * 120.00429 * 179.97438 * 12 11 9 41 41 H 1.08004 * 119.96912 * 359.97438 * 18 17 2 42 42 H 1.08002 * 120.03260 * 180.24779 * 19 18 17 43 43 H 1.09001 * 109.47101 * 77.83364 * 23 22 21 44 44 H 1.09000 * 109.46961 * 197.84205 * 23 22 21 45 45 H 1.09001 * 109.46981 * 317.83795 * 23 22 21 46 46 H 1.09002 * 109.47243 * 60.00121 * 24 22 21 47 47 H 1.09003 * 109.47308 * 179.97438 * 24 22 21 48 48 H 1.09001 * 109.47316 * 300.00329 * 24 22 21 49 49 H 1.09009 * 109.46682 * 48.10727 * 25 22 21 50 50 H 1.09000 * 109.47022 * 168.10590 * 25 22 21 51 51 H 1.08998 * 109.47191 * 288.11055 * 25 22 21 52 52 H 1.07994 * 120.02568 * 179.97438 * 26 20 19 53 53 H 1.08001 * 119.96882 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5963 -0.5330 -3.5740 7 6 3.9937 -1.0852 -3.2850 8 6 1.6474 -1.6895 -3.8952 9 6 2.6602 0.4055 -4.7514 10 1 2.3644 1.4377 -4.6358 11 6 3.0973 -0.0534 -5.9760 12 7 3.4590 -1.3099 -6.1164 13 14 3.1772 1.1102 -7.4351 14 1 4.5129 1.7576 -7.4796 15 1 2.9550 0.3471 -8.6894 16 1 2.1271 2.1509 -7.2963 17 6 2.0324 -0.7102 1.2306 18 6 2.0610 -2.0922 1.2664 19 6 2.5263 -2.7456 2.3910 20 6 2.9549 -2.0142 3.4892 21 8 3.4079 -2.6548 4.5989 22 6 3.3282 -4.0816 4.6024 23 6 4.2086 -4.6443 3.4847 24 6 3.8129 -4.6162 5.9515 25 6 1.8777 -4.5119 4.3746 26 6 2.9199 -0.6277 3.4529 27 6 2.4581 0.0209 2.3241 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9174 -1.1205 -1.0287 32 1 2.7589 1.0461 -2.1183 33 1 1.0871 0.6162 -2.5526 34 1 3.9471 -1.7641 -2.4336 35 1 4.3595 -1.6238 -4.1592 36 1 4.6696 -0.2613 -3.0562 37 1 0.6520 -1.2961 -4.1012 38 1 2.0136 -2.2280 -4.7693 39 1 1.6008 -2.3684 -3.0438 40 1 3.7662 -1.6329 -6.9778 41 1 1.7231 -2.6611 0.4129 42 1 2.5523 -3.8250 2.4171 43 1 5.2526 -4.6187 3.7969 44 1 3.9168 -5.6735 3.2758 45 1 4.0835 -4.0414 2.5853 46 1 3.1857 -4.2153 6.7478 47 1 3.7517 -5.7045 5.9543 48 1 4.8462 -4.3096 6.1138 49 1 1.4650 -3.9641 3.5273 50 1 1.8444 -5.5814 4.1669 51 1 1.2905 -4.2966 5.2673 52 1 3.2526 -0.0562 4.3067 53 1 2.4311 1.1002 2.2951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:43 Heat of formation + Delta-G solvation = -21.481975 kcal Electronic energy + Delta-G solvation = -27703.894752 eV Core-core repulsion = 24154.565119 eV Total energy + Delta-G solvation = -3549.329632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78423 -39.71573 -38.29458 -36.13612 -34.95743 -33.42241 -32.02363 -30.90709 -29.55494 -28.35836 -28.12769 -27.48262 -27.23328 -25.89367 -23.99954 -23.69316 -21.54438 -21.06184 -20.27176 -18.31949 -17.98211 -17.50943 -17.12381 -16.48591 -16.25575 -15.94508 -15.54786 -15.38942 -15.10971 -14.89386 -14.73913 -14.41609 -14.30320 -14.11070 -13.85542 -13.65730 -13.30701 -13.19142 -13.06615 -13.01778 -12.92763 -12.86607 -12.73465 -12.68186 -12.57085 -12.44145 -12.33349 -12.12830 -12.02474 -11.80668 -11.65334 -11.48808 -11.30691 -11.21370 -10.88821 -10.57679 -10.33009 -9.82392 -9.15218 -8.94554 -7.95531 -6.12091 0.42608 0.49580 1.42182 1.44443 1.52770 2.27172 2.47114 2.81443 3.26516 3.43126 3.74228 3.83228 3.83402 3.97210 3.99315 4.01341 4.39071 4.42140 4.50790 4.51547 4.59094 4.61162 4.66215 4.71620 4.72985 4.75020 4.84196 4.89362 4.89954 4.91424 4.96898 5.03050 5.09628 5.15234 5.17006 5.20187 5.26540 5.29242 5.29496 5.38337 5.41916 5.46925 5.49532 5.56164 5.70865 5.73090 5.79595 5.88445 6.21338 6.30478 6.37520 6.51867 6.55737 6.67183 6.97658 7.55293 9.02589 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002583 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.896678 B =10837.068686 C =11400.550577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.126 3.874 3 H 0.042 0.958 4 N -0.677 5.677 5 C 0.091 3.909 6 C 0.062 3.938 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.525 4.525 10 H 0.044 0.956 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.943 3.057 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.128 4.128 18 C -0.072 4.072 19 C -0.218 4.218 20 C 0.122 3.878 21 O -0.322 6.322 22 C 0.100 3.900 23 C -0.200 4.200 24 C -0.135 4.135 25 C -0.201 4.201 26 C -0.164 4.164 27 C -0.080 4.080 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.337 0.663 32 H 0.005 0.995 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.056 0.944 36 H 0.014 0.986 37 H 0.010 0.990 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.257 0.743 41 H 0.129 0.871 42 H 0.162 0.838 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.065 0.935 52 H 0.138 0.862 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 -6.072 23.803 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.016 3.984 3 H 0.060 0.940 4 N -0.309 5.309 5 C -0.038 4.038 6 C 0.061 3.939 7 C -0.178 4.178 8 C -0.162 4.162 9 C -0.564 4.564 10 H 0.062 0.938 11 C -0.177 4.177 12 N -0.543 5.543 13 Si 0.770 3.230 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.235 4.235 20 C 0.077 3.923 21 O -0.237 6.237 22 C 0.063 3.937 23 C -0.257 4.257 24 C -0.192 4.192 25 C -0.257 4.257 26 C -0.183 4.183 27 C -0.098 4.098 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.157 0.843 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.147 0.853 42 H 0.179 0.821 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.109 0.891 51 H 0.084 0.916 52 H 0.156 0.844 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.154 -6.372 23.676 24.613 hybrid contribution 0.870 1.134 -1.124 1.818 sum -1.284 -5.238 22.552 23.188 Atomic orbital electron populations 1.21704 0.93494 1.02060 1.01123 1.20396 0.96223 0.94825 0.86939 0.93986 1.60687 1.33306 1.33213 1.03701 1.21850 0.98315 0.92828 0.90806 1.18119 0.92006 0.92961 0.90816 1.21664 0.98404 0.98259 0.99510 1.21458 0.96687 0.98422 0.99657 1.21441 1.43426 0.96046 0.95478 0.93791 1.25527 0.95206 0.96280 1.00678 1.69961 1.44947 1.15059 1.24294 0.85791 0.78175 0.79361 0.79653 1.20590 1.21085 1.19809 1.19884 1.02891 0.94185 0.95874 1.20986 0.96638 0.93980 0.97459 1.21994 1.05821 1.01866 0.93860 1.19047 0.94649 0.92219 0.86408 1.86112 1.78612 1.22115 1.36903 1.22051 0.96209 0.77133 0.98298 1.22889 1.00684 1.03057 0.99036 1.21837 1.01909 1.02135 0.93301 1.22917 0.95267 1.03778 1.03778 1.20549 1.06014 0.91510 1.00200 1.20989 0.96609 1.00430 0.91769 0.92504 0.91406 0.93500 0.84296 0.97631 0.93100 0.94926 0.92521 0.96723 0.97057 0.93395 0.94596 0.93359 0.85348 0.82130 0.91518 0.89124 0.91173 0.91601 0.88424 0.91755 0.90712 0.89098 0.91567 0.84393 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.39 71.98 0.68 -2.70 16 2 C 0.13 3.63 2.81 44.17 0.12 3.76 16 3 H 0.04 1.24 7.66 -2.39 -0.02 1.22 16 4 N -0.68 -23.37 4.91 -495.45 -2.43 -25.81 16 5 C 0.09 3.77 4.38 86.30 0.38 4.14 16 6 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 7 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 8 C -0.10 -5.08 8.09 71.98 0.58 -4.49 16 9 C -0.53 -28.51 8.01 25.60 0.21 -28.30 16 10 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 11 C 0.02 1.20 5.15 84.66 0.44 1.64 16 12 N -0.90 -50.65 9.35 21.45 0.20 -50.45 16 13 Si 0.94 43.61 29.54 68.60 2.03 45.64 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 C -0.13 -3.34 4.71 -19.85 -0.09 -3.43 16 18 C -0.07 -1.85 9.00 22.25 0.20 -1.65 16 19 C -0.22 -4.96 5.73 22.37 0.13 -4.83 16 20 C 0.12 2.87 6.06 22.51 0.14 3.01 16 21 O -0.32 -7.12 9.79 -92.44 -0.90 -8.02 16 22 C 0.10 1.60 1.11 -10.79 -0.01 1.59 16 23 C -0.20 -3.06 8.11 71.98 0.58 -2.48 16 24 C -0.13 -1.58 8.74 71.98 0.63 -0.96 16 25 C -0.20 -2.88 8.08 71.98 0.58 -2.29 16 26 C -0.16 -3.78 9.99 22.37 0.22 -3.56 16 27 C -0.08 -1.87 9.66 22.25 0.21 -1.65 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.35 7.45 -2.39 -0.02 1.33 16 31 H 0.34 11.83 6.03 -89.69 -0.54 11.29 16 32 H 0.01 0.23 8.06 -2.39 -0.02 0.21 16 33 H 0.05 2.15 7.44 -2.38 -0.02 2.14 16 34 H 0.03 1.36 6.57 -2.39 -0.02 1.34 16 35 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 36 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.05 2.57 6.07 -2.39 -0.01 2.56 16 39 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 40 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.13 3.42 7.72 -2.91 -0.02 3.40 16 42 H 0.16 3.10 3.60 -2.91 -0.01 3.09 16 43 H 0.07 1.00 8.01 -2.39 -0.02 0.98 16 44 H 0.09 1.03 7.84 -2.39 -0.02 1.01 16 45 H 0.07 1.32 4.74 -2.39 -0.01 1.31 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 1.29 4.48 -2.38 -0.01 1.28 16 50 H 0.09 0.94 7.89 -2.39 -0.02 0.92 16 51 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 52 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 53 H 0.14 2.76 8.03 -2.91 -0.02 2.74 16 Total: -1.00 -59.01 396.90 4.76 -54.25 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.34 Total: 28.81 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 5.53 Total: -44.42 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.23 Total: -76.25 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.90 Total: -8.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -59.01 4.76 -54.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.769 kcal (2) G-P(sol) polarization free energy of solvation -59.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds