Wall clock time and date at job start Tue Mar 31 2020 12:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46912 * 2 1 4 4 C 1.52998 * 109.47249 * 120.00017 * 2 1 3 5 5 H 1.08998 * 109.47038 * 203.50161 * 4 2 1 6 6 N 1.46894 * 109.47104 * 323.50488 * 4 2 1 7 7 C 1.46905 * 111.00002 * 252.71920 * 6 4 2 8 8 C 1.50697 * 109.47034 * 185.51604 * 7 6 4 9 9 C 1.38637 * 119.74654 * 269.72203 * 8 7 6 10 10 C 1.37621 * 120.24508 * 179.72049 * 9 8 7 11 11 C 1.40715 * 119.74941 * 0.57517 * 10 9 8 12 12 C 1.41386 * 120.24904 * 179.67823 * 11 10 9 13 13 H 1.08010 * 120.00130 * 27.77871 * 12 11 10 14 14 C 1.39949 * 120.00437 * 207.78170 * 12 11 10 15 15 N 1.30825 * 119.99428 * 11.19365 * 14 12 11 16 16 Si 1.86793 * 120.00086 * 191.19603 * 14 12 11 17 17 H 1.48500 * 109.47391 * 60.00022 * 16 14 12 18 18 H 1.48501 * 109.47047 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47264 * 299.99815 * 16 14 12 20 20 C 1.40716 * 119.50867 * 359.70186 * 11 10 9 21 21 C 1.37626 * 119.74334 * 0.02562 * 20 11 10 22 22 C 1.53000 * 109.47059 * 83.50381 * 4 2 1 23 23 H 1.08999 * 109.47347 * 186.06454 * 22 4 2 24 24 C 1.52997 * 109.47255 * 306.06893 * 22 4 2 25 25 O 1.42897 * 109.47313 * 184.98348 * 24 22 4 26 26 C 1.53002 * 109.46862 * 66.06921 * 22 4 2 27 27 C 1.52999 * 109.46916 * 174.51702 * 26 22 4 28 28 C 1.52997 * 109.47347 * 54.51957 * 26 22 4 29 29 H 1.08998 * 109.46913 * 304.50201 * 1 2 3 30 30 H 1.09000 * 109.47283 * 64.50360 * 1 2 3 31 31 H 1.09005 * 109.46880 * 184.50751 * 1 2 3 32 32 H 1.09003 * 109.47113 * 240.00374 * 2 1 3 33 33 H 1.09003 * 109.47214 * 176.36055 * 3 2 1 34 34 H 1.09006 * 109.47098 * 296.35634 * 3 2 1 35 35 H 1.08997 * 109.47072 * 56.35890 * 3 2 1 36 36 H 1.00905 * 111.00368 * 128.76372 * 6 4 2 37 37 H 1.09002 * 109.46861 * 305.51114 * 7 6 4 38 38 H 1.08993 * 109.47279 * 65.51171 * 7 6 4 39 39 H 1.08002 * 119.87428 * 359.97438 * 9 8 7 40 40 H 1.08005 * 120.12185 * 180.28040 * 10 9 8 41 41 H 0.96995 * 119.99267 * 179.97438 * 15 14 12 42 42 H 1.07999 * 120.13090 * 179.97438 * 20 11 10 43 43 H 1.08001 * 119.87253 * 180.02562 * 21 20 11 44 44 H 1.09003 * 109.47147 * 304.98553 * 24 22 4 45 45 H 1.09004 * 109.47165 * 64.98229 * 24 22 4 46 46 H 0.96702 * 114.00319 * 179.97438 * 25 24 22 47 47 H 1.09001 * 109.47449 * 294.51322 * 26 22 4 48 48 H 1.08998 * 109.47382 * 308.48433 * 27 26 22 49 49 H 1.09010 * 109.47246 * 68.48487 * 27 26 22 50 50 H 1.08997 * 109.47474 * 188.48454 * 27 26 22 51 51 H 1.08994 * 109.47225 * 59.99720 * 28 26 22 52 52 H 1.09001 * 109.47204 * 180.02562 * 28 26 22 53 53 H 1.09006 * 109.46780 * 299.99763 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.0497 -0.3805 1.4787 6 7 1.1536 -0.4243 2.3823 7 6 1.8012 0.4909 3.3316 8 6 0.9204 0.6650 4.5419 9 6 -0.0212 1.6824 4.5667 10 6 -0.8348 1.8472 5.6643 11 6 -0.7001 0.9859 6.7690 12 6 -1.5259 1.1500 7.9048 13 1 -2.5090 1.5848 7.7996 14 6 -1.0695 0.7490 9.1656 15 7 0.1877 0.4290 9.3348 16 14 -2.2554 0.6707 10.6067 17 1 -3.3465 -0.2884 10.2985 18 1 -1.5291 0.2212 11.8215 19 1 -2.8333 2.0176 10.8461 20 6 0.2628 -0.0395 6.7349 21 6 1.0619 -0.1893 5.6245 22 6 2.0562 -2.2301 0.9961 23 1 2.3158 -2.7504 1.9180 24 6 0.6723 -2.6834 0.5270 25 8 0.6542 -4.1067 0.4020 26 6 3.0920 -2.5552 -0.0820 27 6 3.2061 -4.0729 -0.2384 28 6 4.4502 -1.9811 0.3259 29 1 -0.3633 0.5821 0.8469 30 1 -0.3634 0.4424 -0.9276 31 1 -0.3633 -1.0245 0.0808 32 1 1.8934 -0.5138 -0.8900 33 1 3.1281 1.4433 0.0652 34 1 1.7309 1.9372 -0.9209 35 1 1.6243 1.9748 0.8555 36 1 0.8579 -1.2724 2.8420 37 1 2.7617 0.0765 3.6379 38 1 1.9583 1.4581 2.8543 39 1 -0.1192 2.3454 3.7199 40 1 -1.5707 2.6376 5.6797 41 1 0.5040 0.1515 10.2087 42 1 0.3751 -0.7060 7.5773 43 1 1.8014 -0.9759 5.5959 44 1 -0.0777 -2.3729 1.2545 45 1 0.4500 -2.2309 -0.4395 46 1 -0.1945 -4.4651 0.1080 47 1 2.7810 -2.1148 -1.0294 48 1 3.3687 -4.5277 0.7388 49 1 2.2857 -4.4638 -0.6724 50 1 4.0451 -4.3088 -0.8929 51 1 4.7612 -2.4215 1.2731 52 1 5.1880 -2.2123 -0.4424 53 1 4.3689 -0.8998 0.4373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451591108.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:51 Heat of formation + Delta-G solvation = -62.575550 kcal Electronic energy + Delta-G solvation = -28001.252091 eV Core-core repulsion = 24450.140508 eV Total energy + Delta-G solvation = -3551.111584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81693 -39.42846 -37.32407 -36.06106 -35.48750 -34.26592 -31.91268 -31.15367 -30.52716 -28.60198 -27.75003 -27.71291 -25.74609 -24.46343 -22.91650 -22.85056 -21.69455 -21.45868 -19.62816 -19.19191 -18.47211 -17.20684 -16.72188 -16.44127 -16.35650 -15.99857 -15.63209 -15.41274 -15.02234 -14.82496 -14.53482 -14.25479 -14.10449 -13.93848 -13.77655 -13.71625 -13.39921 -13.24250 -13.21890 -13.04866 -12.90185 -12.85721 -12.74250 -12.64472 -12.35623 -12.23232 -12.13790 -11.84471 -11.74007 -11.57865 -11.42621 -11.25142 -11.16721 -11.03157 -11.00749 -10.82123 -10.52892 -9.36917 -9.20742 -9.03259 -8.57524 -6.34065 0.96405 1.17937 1.37319 1.48761 1.52159 2.21460 2.73850 3.33089 3.43312 3.73564 3.80435 3.91225 4.13568 4.20675 4.32067 4.33425 4.35287 4.37883 4.50239 4.54455 4.58723 4.67879 4.70797 4.73603 4.78059 4.83729 4.88288 4.90100 4.99692 5.03107 5.06429 5.09486 5.14302 5.18068 5.19752 5.26006 5.28356 5.36855 5.39943 5.42122 5.50154 5.55209 5.60087 5.65910 5.73989 5.82434 5.98316 6.13028 6.23972 6.31863 6.42683 6.57313 6.73340 6.97041 6.99485 7.06298 8.37950 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.002807 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.439500 B = 9974.428844 C =10450.944671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.144 4.144 4 C 0.093 3.907 5 H 0.062 0.938 6 N -0.673 5.673 7 C 0.134 3.866 8 C -0.192 4.192 9 C -0.072 4.072 10 C -0.239 4.239 11 C 0.078 3.922 12 C -0.503 4.503 13 H 0.072 0.928 14 C 0.031 3.969 15 N -0.835 5.835 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.183 4.183 21 C -0.102 4.102 22 C -0.087 4.087 23 H 0.053 0.947 24 C 0.080 3.920 25 O -0.583 6.583 26 C -0.080 4.080 27 C -0.140 4.140 28 C -0.152 4.152 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.334 0.666 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.285 0.715 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.388 0.612 47 H 0.079 0.921 48 H 0.033 0.967 49 H 0.075 0.925 50 H 0.050 0.950 51 H 0.042 0.958 52 H 0.063 0.937 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 -5.685 -19.136 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.201 4.201 4 C -0.016 4.016 5 H 0.080 0.920 6 N -0.303 5.303 7 C 0.006 3.994 8 C -0.194 4.194 9 C -0.091 4.091 10 C -0.259 4.259 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.090 0.910 14 C -0.182 4.182 15 N -0.462 5.462 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.202 4.202 21 C -0.121 4.121 22 C -0.106 4.106 23 H 0.072 0.928 24 C 0.003 3.997 25 O -0.391 6.391 26 C -0.099 4.099 27 C -0.197 4.197 28 C -0.209 4.209 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.153 0.847 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.237 0.763 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.082 0.918 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.094 -5.169 -19.087 20.420 hybrid contribution -0.362 -0.517 1.552 1.675 sum 4.732 -5.685 -17.535 19.031 Atomic orbital electron populations 1.22062 0.94989 1.02841 1.00593 1.21179 0.96538 0.95732 0.96389 1.21848 1.00380 0.96447 1.01459 1.21805 0.95090 0.92783 0.91922 0.91999 1.60752 1.40794 1.18513 1.10280 1.20556 0.92621 0.96883 0.89383 1.19366 1.03081 1.00588 0.96350 1.20611 0.94928 0.97232 0.96312 1.21215 1.05089 1.02220 0.97368 1.17954 0.92003 0.89950 0.92522 1.19807 1.02469 1.38434 0.92655 0.90965 1.26734 0.96850 0.91749 1.02859 1.69860 1.16062 1.34283 1.26010 0.85239 0.78465 0.79818 0.76072 1.18506 1.19266 1.18488 1.21298 1.00817 1.00115 0.97998 1.20771 0.98648 0.98718 0.93950 1.21550 0.95308 0.94794 0.98984 0.92811 1.22608 0.96311 0.80678 1.00122 1.86524 1.39748 1.21489 1.91312 1.21064 0.94271 0.96623 0.97924 1.21878 1.02188 0.94847 1.00745 1.21961 0.96803 1.00964 1.01166 0.93064 0.93666 0.91335 0.90249 0.92894 0.92304 0.93758 0.84721 0.96071 0.91016 0.86957 0.88832 0.90436 0.88280 0.88298 0.93755 0.91266 0.76263 0.90299 0.94753 0.90595 0.93114 0.93832 0.91790 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.04 71.98 0.58 -2.48 16 2 C -0.08 -1.52 2.27 -10.79 -0.02 -1.55 16 3 C -0.14 -2.81 9.10 71.98 0.66 -2.16 16 4 C 0.09 2.03 1.57 44.92 0.07 2.10 16 5 H 0.06 1.40 5.07 -2.39 -0.01 1.39 16 6 N -0.67 -18.42 4.55 -495.59 -2.25 -20.67 16 7 C 0.13 4.28 5.59 85.56 0.48 4.76 16 8 C -0.19 -7.93 5.36 -19.68 -0.11 -8.04 16 9 C -0.07 -3.15 9.67 22.22 0.21 -2.93 16 10 C -0.24 -11.96 9.80 22.73 0.22 -11.73 16 11 C 0.08 4.30 5.56 -21.29 -0.12 4.18 16 12 C -0.50 -27.94 9.07 23.46 0.21 -27.73 16 13 H 0.07 3.87 7.87 -2.91 -0.02 3.85 16 14 C 0.03 1.62 5.25 85.26 0.45 2.07 16 15 N -0.84 -44.96 10.80 21.83 0.24 -44.73 16 16 Si 0.98 39.34 29.57 68.60 2.03 41.37 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 C -0.18 -9.78 8.67 22.73 0.20 -9.59 16 21 C -0.10 -4.70 9.67 22.22 0.21 -4.48 16 22 C -0.09 -1.79 1.39 -10.79 -0.01 -1.81 16 23 H 0.05 1.34 8.07 -2.39 -0.02 1.33 16 24 C 0.08 1.51 4.53 71.98 0.33 1.84 16 25 O -0.58 -10.65 10.36 -148.98 -1.54 -12.19 16 26 C -0.08 -1.42 2.21 -10.79 -0.02 -1.45 16 27 C -0.14 -2.59 8.26 71.98 0.59 -2.00 16 28 C -0.15 -2.63 8.69 71.98 0.63 -2.00 16 29 H 0.05 1.33 7.42 -2.39 -0.02 1.31 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.33 3.79 -2.38 -0.01 1.32 16 32 H 0.08 1.32 5.93 -2.39 -0.01 1.30 16 33 H 0.05 0.95 8.05 -2.39 -0.02 0.93 16 34 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.04 1.02 6.98 -2.39 -0.02 1.01 16 36 H 0.33 9.95 7.31 -89.69 -0.66 9.29 16 37 H 0.02 0.67 7.94 -2.39 -0.02 0.65 16 38 H 0.07 2.20 6.91 -2.39 -0.02 2.18 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 42 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 43 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.04 0.96 6.48 -2.39 -0.02 0.95 16 45 H 0.07 1.14 5.67 -2.39 -0.01 1.13 16 46 H 0.39 4.04 9.12 -74.06 -0.68 3.36 16 47 H 0.08 1.27 6.48 -2.39 -0.02 1.26 16 48 H 0.03 0.73 8.11 -2.39 -0.02 0.71 16 49 H 0.08 1.44 5.85 -2.38 -0.01 1.42 16 50 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 51 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 1.02 6.21 -2.38 -0.01 1.00 16 Total: -1.00 -59.72 393.86 2.60 -57.13 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.42 Total: 42.09 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 4.55 Total: -62.99 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -2.02 Total: -65.40 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.54 Total: -12.19 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -59.72 2.60 -57.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451591108.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.450 kcal (2) G-P(sol) polarization free energy of solvation -59.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds