Wall clock time and date at job start Tue Mar 31 2020 12:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35894 * 117.00317 * 2 1 4 4 C 1.38756 * 120.05556 * 359.72607 * 3 2 1 5 5 C 1.38126 * 119.94658 * 179.69953 * 4 3 2 6 6 C 1.38290 * 120.05097 * 0.59464 * 5 4 3 7 7 C 1.38247 * 120.11194 * 359.67724 * 6 5 4 8 8 C 1.50697 * 119.96935 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47384 * 270.02722 * 8 7 6 10 10 C 1.53000 * 109.47155 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.46965 * 174.86179 * 10 9 8 12 12 C 1.46908 * 111.00003 * 199.73920 * 11 10 9 13 13 C 1.50694 * 109.47182 * 75.35187 * 12 11 10 14 14 H 1.08000 * 120.00195 * 355.19371 * 13 12 11 15 15 C 1.37878 * 119.99885 * 175.18524 * 13 12 11 16 16 N 1.31512 * 120.00092 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99919 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.47033 * 90.00146 * 17 15 13 19 19 H 1.48496 * 109.46946 * 209.99615 * 17 15 13 20 20 H 1.48492 * 109.47219 * 330.00102 * 17 15 13 21 21 C 1.46898 * 111.00179 * 75.78441 * 11 10 9 22 22 C 1.53004 * 109.47281 * 189.99765 * 21 11 10 23 23 C 1.52994 * 109.46941 * 179.97438 * 22 21 11 24 24 C 1.52999 * 109.46963 * 175.00187 * 23 22 21 25 25 C 1.52999 * 109.47534 * 295.00237 * 23 22 21 26 26 C 1.38160 * 120.05662 * 0.02696 * 7 6 5 27 27 H 1.09005 * 109.47297 * 300.00108 * 1 2 3 28 28 H 1.09008 * 109.47155 * 60.00107 * 1 2 3 29 29 H 1.09005 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.02606 * 359.97388 * 4 3 2 31 31 H 1.07994 * 119.97231 * 180.29598 * 5 4 3 32 32 H 1.08002 * 119.94243 * 179.69857 * 6 5 4 33 33 H 1.09005 * 109.47281 * 30.02560 * 8 7 6 34 34 H 1.09005 * 109.46916 * 150.02543 * 8 7 6 35 35 H 1.09005 * 109.46779 * 300.00145 * 9 8 7 36 36 H 1.08990 * 109.47245 * 59.99941 * 9 8 7 37 37 H 1.09003 * 109.46891 * 294.86093 * 10 9 8 38 38 H 1.09000 * 109.46845 * 54.86128 * 10 9 8 39 39 H 1.08996 * 109.46699 * 195.35494 * 12 11 10 40 40 H 1.08998 * 109.46864 * 315.35450 * 12 11 10 41 41 H 0.96996 * 120.00477 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.46785 * 309.99869 * 21 11 10 43 43 H 1.08992 * 109.47276 * 69.99946 * 21 11 10 44 44 H 1.08997 * 109.47268 * 300.00343 * 22 21 11 45 45 H 1.09005 * 109.46665 * 60.00166 * 22 21 11 46 46 H 1.08998 * 109.47453 * 55.00391 * 23 22 21 47 47 H 1.09006 * 109.47365 * 60.00218 * 24 23 22 48 48 H 1.09005 * 109.47394 * 180.02562 * 24 23 22 49 49 H 1.09005 * 109.47248 * 300.00256 * 24 23 22 50 50 H 1.08997 * 109.47342 * 180.02562 * 25 23 22 51 51 H 1.09006 * 109.46932 * 299.99867 * 25 23 22 52 52 H 1.08996 * 109.47401 * 59.99949 * 25 23 22 53 53 H 1.08002 * 120.03063 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0057 5 6 1.9209 3.6048 0.0005 6 6 3.3020 3.6757 0.0001 7 6 4.0560 2.5170 0.0002 8 6 5.5608 2.5980 -0.0009 9 6 6.0691 2.6255 -1.4437 10 6 7.5970 2.7071 -1.4447 11 7 8.0916 2.6096 -2.8245 12 6 9.5071 2.2174 -2.8498 13 6 9.6268 0.7480 -2.5376 14 1 8.7494 0.1808 -2.2641 15 6 10.8565 0.1276 -2.6013 16 7 10.9610 -1.1548 -2.3294 17 14 12.3742 1.1088 -3.0740 18 1 12.9997 1.6729 -1.8509 19 1 13.3446 0.2191 -3.7608 20 1 11.9848 2.2143 -3.9857 21 6 7.8815 3.8699 -3.5494 22 6 8.1740 3.6580 -5.0362 23 6 7.9546 4.9705 -5.7912 24 6 8.3659 4.7922 -7.2540 25 6 6.4763 5.3585 -5.7207 26 6 3.4311 1.2847 0.0000 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2128 2.3203 -0.0106 31 1 1.3340 4.5113 0.0009 32 1 3.7923 4.6380 0.0001 33 1 5.8761 3.5063 0.5128 34 1 5.9718 1.7288 0.5127 35 1 5.7538 1.7172 -1.9574 36 1 5.6582 3.4945 -1.9573 37 1 7.9103 3.6576 -1.0127 38 1 8.0050 1.8872 -0.8536 39 1 9.9208 2.4136 -3.8389 40 1 10.0570 2.7929 -2.1052 41 1 11.8261 -1.5912 -2.3738 42 1 6.8479 4.1927 -3.4248 43 1 8.5508 4.6332 -3.1527 44 1 9.2076 3.3351 -5.1607 45 1 7.5046 2.8947 -5.4329 46 1 8.5584 5.7562 -5.3372 47 1 7.7620 4.0065 -7.7081 48 1 8.2100 5.7274 -7.7919 49 1 9.4191 4.5158 -7.3042 50 1 6.3199 6.2933 -6.2590 51 1 5.8724 4.5728 -6.1748 52 1 6.1832 5.4855 -4.6786 53 1 4.0206 0.3798 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000484901554.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:55 Heat of formation + Delta-G solvation = -37.432809 kcal Electronic energy + Delta-G solvation = -26757.156478 eV Core-core repulsion = 23207.135166 eV Total energy + Delta-G solvation = -3550.021312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.20714 -38.08456 -37.57377 -35.68771 -33.80091 -32.37070 -30.80612 -30.00258 -28.97125 -27.55536 -27.04699 -27.01220 -24.70370 -22.67815 -22.58411 -21.71509 -20.56764 -19.82361 -19.47793 -17.78607 -16.83504 -16.36308 -16.03977 -15.86474 -15.32055 -14.86213 -14.70722 -14.49128 -14.06136 -13.98960 -13.69653 -13.48351 -13.43635 -13.03945 -12.93468 -12.52116 -12.43392 -12.33395 -12.11306 -12.06262 -11.74156 -11.63060 -11.54438 -11.31013 -11.13063 -11.02009 -10.97994 -10.76257 -10.68477 -10.49621 -10.35999 -10.27690 -10.08948 -9.76697 -9.60506 -9.21062 -8.79029 -8.52122 -8.24185 -7.30037 -6.00087 -3.96046 1.28983 1.41625 3.15320 3.30328 3.38182 3.39659 3.71865 4.45686 4.63252 4.68080 4.78790 4.91139 4.93060 5.02567 5.08884 5.12842 5.19070 5.24023 5.25496 5.31301 5.34047 5.47353 5.58013 5.64947 5.68345 5.71154 5.80851 5.81471 5.88933 5.93736 5.99401 6.02668 6.05778 6.10085 6.14548 6.25008 6.29054 6.31932 6.33573 6.37572 6.41296 6.56666 6.63864 6.69059 6.77310 6.80002 6.80564 6.96497 7.00250 7.32372 7.70954 7.99941 8.13805 8.73200 9.10594 9.62284 11.13319 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.003129 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.390844 B = 8947.169876 C =10937.704367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.219 4.219 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.030 4.030 8 C -0.084 4.084 9 C -0.103 4.103 10 C 0.062 3.938 11 N -0.527 5.527 12 C 0.157 3.843 13 C -0.502 4.502 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.872 3.128 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.055 3.945 22 C -0.113 4.113 23 C -0.097 4.097 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.085 0.915 39 H 0.033 0.967 40 H -0.019 1.019 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.017 0.983 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.046 0.954 51 H 0.054 0.946 52 H 0.055 0.945 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 11.688 1.601 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.238 4.238 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.030 4.030 8 C -0.121 4.121 9 C -0.141 4.141 10 C -0.066 4.066 11 N -0.250 5.250 12 C 0.031 3.969 13 C -0.541 4.541 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.699 3.301 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.074 4.074 22 C -0.150 4.150 23 C -0.116 4.116 24 C -0.203 4.203 25 C -0.203 4.203 26 C -0.165 4.165 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.104 0.896 39 H 0.051 0.949 40 H -0.001 1.001 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.074 0.926 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.437 10.967 1.367 21.496 hybrid contribution 1.067 1.193 0.160 1.609 sum -17.370 12.160 1.527 21.258 Atomic orbital electron populations 1.23025 0.78686 1.03798 1.01143 1.86093 1.21135 1.27089 1.88759 1.19029 0.92349 0.84034 0.96412 1.21153 0.99696 0.92513 1.10409 1.20872 0.94604 0.96772 0.97720 1.20968 0.93607 0.98133 1.04736 1.19784 0.96159 0.91943 0.95150 1.20675 0.89650 1.03171 0.98643 1.21531 0.95892 1.02540 0.94180 1.22016 0.93827 1.00059 0.90704 1.61931 1.21425 1.28322 1.13328 1.20277 0.83634 0.97016 0.95942 1.21059 0.95422 0.92104 1.45469 0.90160 1.24894 0.98559 0.94718 0.95212 1.69892 1.24636 1.09597 1.49982 0.86918 0.83603 0.80425 0.79125 1.20438 1.21238 1.19183 1.22142 0.99702 0.91319 0.94199 1.21679 1.02633 0.96233 0.94481 1.21112 0.96502 0.98156 0.95826 1.21824 1.01390 1.01086 0.95980 1.21868 0.96170 1.00628 1.01600 1.20409 0.91206 0.98685 1.06247 0.92846 0.92767 0.88344 0.85896 0.86098 0.86034 0.91058 0.90337 0.90831 0.92756 0.96363 0.89625 0.94910 1.00103 0.92778 0.91674 0.96495 0.91542 0.91163 0.91817 0.92656 0.93259 0.92779 0.93450 0.92687 0.92580 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.89 10.50 -19.41 -0.20 -4.09 16 3 C 0.13 1.62 6.69 -39.21 -0.26 1.36 16 4 C -0.22 -2.38 9.04 -39.43 -0.36 -2.73 16 5 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.16 -1.79 9.70 -39.56 -0.38 -2.18 16 7 C -0.03 -0.39 5.13 -104.65 -0.54 -0.93 16 8 C -0.08 -1.10 5.34 -27.88 -0.15 -1.25 16 9 C -0.10 -1.59 5.23 -26.73 -0.14 -1.73 16 10 C 0.06 1.14 4.81 -3.83 -0.02 1.12 16 11 N -0.53 -10.87 4.36 -236.08 -1.03 -11.90 16 12 C 0.16 3.81 3.68 -4.97 -0.02 3.79 16 13 C -0.50 -14.26 9.07 -34.44 -0.31 -14.58 16 14 H 0.08 2.49 7.99 -52.49 -0.42 2.07 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 17 Si 0.87 21.63 27.57 -169.99 -4.69 16.95 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.36 6.41 56.52 0.36 -6.00 16 21 C 0.05 0.94 4.54 -3.82 -0.02 0.92 16 22 C -0.11 -1.84 4.65 -26.73 -0.12 -1.96 16 23 C -0.10 -1.26 2.92 -90.62 -0.26 -1.53 16 24 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 25 C -0.15 -1.67 8.95 37.16 0.33 -1.34 16 26 C -0.15 -2.00 9.64 -39.44 -0.38 -2.38 16 27 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.05 0.36 7.65 -51.92 -0.40 -0.03 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.12 1.03 6.30 -52.48 -0.33 0.70 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.78 6.96 -51.93 -0.36 0.42 16 37 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 38 H 0.09 1.77 7.23 -51.93 -0.38 1.40 16 39 H 0.03 0.81 4.60 -51.93 -0.24 0.57 16 40 H -0.02 -0.46 7.67 -51.93 -0.40 -0.86 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 42 H 0.06 1.00 5.14 -51.93 -0.27 0.74 16 43 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 44 H 0.07 1.22 6.25 -51.93 -0.32 0.89 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 53 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 412.98 15.07 6.22 6.22 Total: -1.00 -31.45 412.98 -10.49 -41.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -9.78 Total: 0.85 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.79 Total: -22.98 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.26 Total: -38.89 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.20 Total: -4.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.69 Total: 16.95 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.45 -10.49 -41.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000484901554.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds