Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35904 * 116.99663 * 2 1 4 4 C 1.38727 * 120.05715 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94710 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05526 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94388 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47262 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46847 * 239.99816 * 7 6 5 10 10 C 1.52994 * 109.47428 * 119.99976 * 7 6 5 11 11 N 1.46902 * 109.47342 * 185.96641 * 10 7 6 12 12 C 1.46897 * 111.00220 * 213.31843 * 11 10 7 13 13 C 1.50697 * 109.47195 * 169.99575 * 12 11 10 14 14 H 1.08003 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00068 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99965 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00008 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47099 * 89.99954 * 17 15 13 19 19 H 1.48497 * 109.46858 * 210.00142 * 17 15 13 20 20 H 1.48500 * 109.46748 * 330.00194 * 17 15 13 21 21 C 1.46900 * 110.99807 * 89.36279 * 11 10 7 22 22 C 1.53001 * 109.47325 * 287.90149 * 21 11 10 23 23 C 1.52993 * 109.47192 * 186.26192 * 22 21 11 24 24 C 1.53003 * 109.46888 * 65.00301 * 23 22 21 25 25 C 1.53002 * 109.47217 * 185.00390 * 23 22 21 26 26 C 1.38270 * 120.11209 * 0.27595 * 6 5 4 27 27 C 1.38145 * 120.05471 * 359.45078 * 26 6 5 28 28 H 1.08999 * 109.47153 * 60.00033 * 1 2 3 29 29 H 1.09003 * 109.46230 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47084 * 299.99446 * 1 2 3 31 31 H 1.08007 * 120.02334 * 359.95409 * 4 3 2 32 32 H 1.08003 * 119.97338 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.47352 * 179.97438 * 9 7 6 34 34 H 1.09002 * 109.47087 * 300.00011 * 9 7 6 35 35 H 1.09000 * 109.47293 * 59.99676 * 9 7 6 36 36 H 1.09007 * 109.47492 * 65.97023 * 10 7 6 37 37 H 1.09002 * 109.47345 * 305.96873 * 10 7 6 38 38 H 1.08998 * 109.47304 * 290.00424 * 12 11 10 39 39 H 1.09001 * 109.46986 * 49.99985 * 12 11 10 40 40 H 0.97003 * 119.99690 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.46851 * 47.90694 * 21 11 10 42 42 H 1.09004 * 109.46964 * 167.90235 * 21 11 10 43 43 H 1.08997 * 109.47317 * 306.26951 * 22 21 11 44 44 H 1.09001 * 109.46870 * 66.26368 * 22 21 11 45 45 H 1.09001 * 109.47683 * 305.00619 * 23 22 21 46 46 H 1.08996 * 109.46957 * 299.99767 * 24 23 22 47 47 H 1.08999 * 109.46908 * 60.00220 * 24 23 22 48 48 H 1.09004 * 109.46684 * 179.97438 * 24 23 22 49 49 H 1.08990 * 109.47013 * 60.00168 * 25 23 22 50 50 H 1.09004 * 109.47218 * 180.02562 * 25 23 22 51 51 H 1.09000 * 109.46692 * 299.99745 * 25 23 22 52 52 H 1.07994 * 119.97149 * 179.70855 * 26 6 5 53 53 H 1.07993 * 120.03102 * 180.27639 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 1 5.0664 4.8759 -0.0026 9 6 3.5751 5.8013 1.2461 10 6 3.5744 5.7997 -1.2523 11 7 4.3480 7.0462 -1.3276 12 6 3.5521 8.1243 -1.9294 13 6 4.2783 9.4349 -1.7682 14 1 5.2356 9.4640 -1.2690 15 6 3.7211 10.5967 -2.2589 16 7 2.5557 10.5612 -2.8673 17 14 4.6216 12.2212 -2.0597 18 1 5.5059 12.4440 -3.2317 19 1 3.6341 13.3264 -1.9675 20 1 5.4407 12.1845 -0.8216 21 6 5.6025 6.8435 -2.0646 22 6 6.5696 6.0225 -1.2094 23 6 7.9280 5.9437 -1.9088 24 6 8.5436 7.3422 -1.9864 25 6 8.8566 5.0208 -1.1169 26 6 1.9209 3.6049 0.0042 27 6 1.2914 2.3752 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0209 0.3801 -0.0002 32 1 5.1345 2.5753 -0.0019 33 1 4.0702 6.7723 1.2456 34 1 2.4945 5.9441 1.2463 35 1 3.8682 5.2449 2.1364 36 1 2.5112 6.0346 -1.2004 37 1 3.7703 5.1964 -2.1388 38 1 3.4045 7.9186 -2.9896 39 1 2.5838 8.1820 -1.4323 40 1 2.1639 11.3785 -3.2128 41 1 5.3964 6.3109 -2.9931 42 1 6.0503 7.8108 -2.2925 43 1 6.6889 6.4993 -0.2365 44 1 6.1714 5.0168 -1.0746 45 1 7.7958 5.5486 -2.9161 46 1 7.8821 7.9996 -2.5506 47 1 8.6760 7.7373 -0.9792 48 1 9.5116 7.2859 -2.4843 49 1 8.4181 4.0246 -1.0617 50 1 9.8246 4.9650 -1.6150 51 1 8.9890 5.4160 -0.1098 52 1 1.3341 4.5114 0.0085 53 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538297076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -33.191764 kcal Electronic energy + Delta-G solvation = -27622.283984 eV Core-core repulsion = 24072.446577 eV Total energy + Delta-G solvation = -3549.837407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21990 -38.47345 -37.25726 -35.45902 -33.60161 -32.23006 -31.03910 -29.11190 -28.85817 -27.24151 -27.05376 -26.80188 -24.79166 -23.08306 -22.68995 -22.12399 -20.34249 -19.72567 -19.26170 -18.20705 -16.43302 -16.26957 -15.84774 -15.53045 -15.11812 -14.72806 -14.60417 -14.32176 -14.00287 -13.81331 -13.67931 -13.51032 -13.12700 -13.01129 -12.80788 -12.39845 -12.25700 -12.20680 -12.01885 -11.97175 -11.83153 -11.42194 -11.23068 -11.11260 -11.05225 -11.01371 -10.80485 -10.75810 -10.63659 -10.49683 -10.36659 -10.20825 -10.10275 -9.64214 -9.49953 -9.14543 -8.96491 -8.42811 -8.02313 -7.17481 -6.01215 -4.01971 1.37806 1.47917 3.17625 3.31855 3.38478 3.42551 3.80275 4.43025 4.74105 4.77608 4.86566 4.95129 4.96158 5.10101 5.16738 5.23373 5.24937 5.33176 5.34039 5.40317 5.47223 5.52875 5.67221 5.71681 5.80048 5.83496 5.86742 5.98355 6.04215 6.06852 6.08759 6.14513 6.19248 6.27638 6.28100 6.33077 6.37587 6.42616 6.48045 6.49138 6.53684 6.60664 6.77917 6.82532 6.84909 6.93121 6.96931 7.33740 7.35514 7.41006 7.83776 8.13829 8.27208 8.59610 9.06340 9.62156 11.09614 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003378 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.203280 B = 8287.999789 C =10183.218356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.151 4.151 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.054 4.054 8 H 0.089 0.911 9 C -0.131 4.131 10 C 0.064 3.936 11 N -0.533 5.533 12 C 0.195 3.805 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.061 3.939 22 C -0.113 4.113 23 C -0.097 4.097 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.074 4.074 27 C -0.205 4.205 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.027 0.973 38 H -0.012 1.012 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.015 0.985 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.053 0.947 52 H 0.126 0.874 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -18.098 5.561 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.170 4.170 5 C -0.099 4.099 6 C -0.100 4.100 7 C -0.073 4.073 8 H 0.107 0.893 9 C -0.188 4.188 10 C -0.065 4.065 11 N -0.256 5.256 12 C 0.070 3.930 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.067 4.067 22 C -0.151 4.151 23 C -0.116 4.116 24 C -0.206 4.206 25 C -0.201 4.201 26 C -0.092 4.092 27 C -0.224 4.224 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.033 0.967 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.072 0.928 52 H 0.144 0.856 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.213 -18.004 5.951 19.091 hybrid contribution -0.256 0.798 -0.870 1.209 sum 1.957 -17.206 5.081 18.046 Atomic orbital electron populations 1.23013 0.78682 1.03598 1.01384 1.86037 1.21163 1.27273 1.89145 1.18995 0.92373 0.83956 0.97993 1.20361 0.91273 0.98492 1.06878 1.20895 0.99716 0.90974 0.98300 1.20039 0.93542 0.95567 1.00809 1.20461 1.00314 0.89883 0.96607 0.89338 1.21694 1.01029 1.00891 0.95221 1.22121 0.97836 0.91517 0.94988 1.61978 1.05153 1.04909 1.53595 1.19731 0.92982 0.88018 0.92283 1.21165 1.05575 0.91324 1.36151 0.91830 1.24977 0.95029 0.99145 0.95436 1.69958 1.16954 1.28066 1.38912 0.86558 0.79408 0.83328 0.78502 1.20805 1.21338 1.19750 1.22154 0.91166 1.00262 0.93167 1.21895 0.93519 0.99838 0.99855 1.21101 0.95426 0.95786 0.99264 1.21892 0.99987 0.96779 1.01961 1.21825 0.98929 0.99153 1.00227 1.20892 0.94398 0.96930 0.97003 1.21213 0.99788 0.92421 1.08951 0.92699 0.88516 0.92759 0.85625 0.85564 0.90492 0.93491 0.94137 0.92073 0.95499 0.99459 0.95312 0.93009 0.96682 0.89447 0.91317 0.92295 0.91849 0.91718 0.92754 0.93634 0.93124 0.93290 0.92819 0.85631 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.74 10.50 -19.44 -0.20 -3.94 16 3 C 0.11 1.40 6.69 -39.21 -0.26 1.14 16 4 C -0.15 -1.85 9.99 -39.44 -0.39 -2.24 16 5 C -0.08 -1.00 9.66 -39.61 -0.38 -1.39 16 6 C -0.10 -1.35 4.78 -104.60 -0.50 -1.85 16 7 C -0.05 -0.80 2.46 -91.77 -0.23 -1.02 16 8 H 0.09 1.27 4.31 -51.93 -0.22 1.05 16 9 C -0.13 -1.97 8.90 37.16 0.33 -1.64 16 10 C 0.06 1.14 4.09 -3.83 -0.02 1.12 16 11 N -0.53 -10.93 3.87 -236.07 -0.91 -11.84 16 12 C 0.19 4.96 4.63 -4.98 -0.02 4.94 16 13 C -0.50 -13.79 8.28 -34.44 -0.29 -14.07 16 14 H 0.06 1.72 7.26 -52.48 -0.38 1.34 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 C 0.06 1.14 4.65 -3.82 -0.02 1.12 16 22 C -0.11 -1.70 3.67 -26.73 -0.10 -1.80 16 23 C -0.10 -1.27 2.92 -90.62 -0.26 -1.53 16 24 C -0.15 -2.03 8.96 37.16 0.33 -1.69 16 25 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 26 C -0.07 -0.99 8.76 -39.60 -0.35 -1.33 16 27 C -0.21 -2.51 9.04 -39.43 -0.36 -2.86 16 28 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.13 1.35 7.94 -52.48 -0.42 0.93 16 33 H 0.08 1.31 7.78 -51.93 -0.40 0.91 16 34 H 0.05 0.70 7.37 -51.93 -0.38 0.31 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.13 6.99 -51.92 -0.36 0.77 16 37 H 0.03 0.48 7.53 -51.93 -0.39 0.09 16 38 H -0.01 -0.34 8.12 -51.93 -0.42 -0.77 16 39 H 0.03 0.79 7.79 -51.93 -0.40 0.38 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.01 0.29 7.73 -51.93 -0.40 -0.11 16 42 H 0.09 1.82 4.74 -51.93 -0.25 1.57 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.83 5.61 -51.93 -0.29 0.54 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.99 6.44 -51.93 -0.33 0.66 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.13 1.64 7.17 -52.49 -0.38 1.26 16 53 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -29.68 408.49 -10.05 -39.73 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.53 Total: 0.95 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.27 Total: -21.70 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.18 Total: -37.62 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.68 -10.05 -39.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538297076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.535 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds