Wall clock time and date at job start Tue Mar 31 2020 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35904 * 116.99663 * 2 1 4 4 C 1.38727 * 120.05715 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94710 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05526 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94388 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47262 * 359.97438 * 7 6 5 9 9 C 1.53003 * 109.46847 * 239.99816 * 7 6 5 10 10 C 1.52994 * 109.47428 * 119.99976 * 7 6 5 11 11 N 1.46902 * 109.47342 * 185.96641 * 10 7 6 12 12 C 1.46897 * 111.00220 * 213.31843 * 11 10 7 13 13 C 1.50697 * 109.47195 * 169.99575 * 12 11 10 14 14 H 1.08003 * 119.99983 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00068 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99965 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 120.00008 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47099 * 89.99954 * 17 15 13 19 19 H 1.48497 * 109.46858 * 210.00142 * 17 15 13 20 20 H 1.48500 * 109.46748 * 330.00194 * 17 15 13 21 21 C 1.46900 * 110.99807 * 89.36279 * 11 10 7 22 22 C 1.53001 * 109.47325 * 287.90149 * 21 11 10 23 23 C 1.52993 * 109.47192 * 186.26192 * 22 21 11 24 24 C 1.53003 * 109.46888 * 65.00301 * 23 22 21 25 25 C 1.53002 * 109.47217 * 185.00390 * 23 22 21 26 26 C 1.38270 * 120.11209 * 0.27595 * 6 5 4 27 27 C 1.38145 * 120.05471 * 359.45078 * 26 6 5 28 28 H 1.08999 * 109.47153 * 60.00033 * 1 2 3 29 29 H 1.09003 * 109.46230 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47084 * 299.99446 * 1 2 3 31 31 H 1.08007 * 120.02334 * 359.95409 * 4 3 2 32 32 H 1.08003 * 119.97338 * 180.02562 * 5 4 3 33 33 H 1.08993 * 109.47352 * 179.97438 * 9 7 6 34 34 H 1.09002 * 109.47087 * 300.00011 * 9 7 6 35 35 H 1.09000 * 109.47293 * 59.99676 * 9 7 6 36 36 H 1.09007 * 109.47492 * 65.97023 * 10 7 6 37 37 H 1.09002 * 109.47345 * 305.96873 * 10 7 6 38 38 H 1.08998 * 109.47304 * 290.00424 * 12 11 10 39 39 H 1.09001 * 109.46986 * 49.99985 * 12 11 10 40 40 H 0.97003 * 119.99690 * 180.02562 * 16 15 13 41 41 H 1.09004 * 109.46851 * 47.90694 * 21 11 10 42 42 H 1.09004 * 109.46964 * 167.90235 * 21 11 10 43 43 H 1.08997 * 109.47317 * 306.26951 * 22 21 11 44 44 H 1.09001 * 109.46870 * 66.26368 * 22 21 11 45 45 H 1.09001 * 109.47683 * 305.00619 * 23 22 21 46 46 H 1.08996 * 109.46957 * 299.99767 * 24 23 22 47 47 H 1.08999 * 109.46908 * 60.00220 * 24 23 22 48 48 H 1.09004 * 109.46684 * 179.97438 * 24 23 22 49 49 H 1.08990 * 109.47013 * 60.00168 * 25 23 22 50 50 H 1.09004 * 109.47218 * 180.02562 * 25 23 22 51 51 H 1.09000 * 109.46692 * 299.99745 * 25 23 22 52 52 H 1.07994 * 119.97149 * 179.70855 * 26 6 5 53 53 H 1.07993 * 120.03102 * 180.27639 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2850 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 1 5.0664 4.8759 -0.0026 9 6 3.5751 5.8013 1.2461 10 6 3.5744 5.7997 -1.2523 11 7 4.3480 7.0462 -1.3276 12 6 3.5521 8.1243 -1.9294 13 6 4.2783 9.4349 -1.7682 14 1 5.2356 9.4640 -1.2690 15 6 3.7211 10.5967 -2.2589 16 7 2.5557 10.5612 -2.8673 17 14 4.6216 12.2212 -2.0597 18 1 5.5059 12.4440 -3.2317 19 1 3.6341 13.3264 -1.9675 20 1 5.4407 12.1845 -0.8216 21 6 5.6025 6.8435 -2.0646 22 6 6.5696 6.0225 -1.2094 23 6 7.9280 5.9437 -1.9088 24 6 8.5436 7.3422 -1.9864 25 6 8.8566 5.0208 -1.1169 26 6 1.9209 3.6049 0.0042 27 6 1.2914 2.3752 -0.0010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0209 0.3801 -0.0002 32 1 5.1345 2.5753 -0.0019 33 1 4.0702 6.7723 1.2456 34 1 2.4945 5.9441 1.2463 35 1 3.8682 5.2449 2.1364 36 1 2.5112 6.0346 -1.2004 37 1 3.7703 5.1964 -2.1388 38 1 3.4045 7.9186 -2.9896 39 1 2.5838 8.1820 -1.4323 40 1 2.1639 11.3785 -3.2128 41 1 5.3964 6.3109 -2.9931 42 1 6.0503 7.8108 -2.2925 43 1 6.6889 6.4993 -0.2365 44 1 6.1714 5.0168 -1.0746 45 1 7.7958 5.5486 -2.9161 46 1 7.8821 7.9996 -2.5506 47 1 8.6760 7.7373 -0.9792 48 1 9.5116 7.2859 -2.4843 49 1 8.4181 4.0246 -1.0617 50 1 9.8246 4.9650 -1.6150 51 1 8.9890 5.4160 -0.1098 52 1 1.3341 4.5114 0.0085 53 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000538297076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:37 Heat of formation + Delta-G solvation = -47.729903 kcal Electronic energy + Delta-G solvation = -27622.914405 eV Core-core repulsion = 24072.446577 eV Total energy + Delta-G solvation = -3550.467828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15948 -39.71980 -38.40279 -36.70617 -35.20216 -34.02850 -31.98766 -30.39818 -30.08898 -28.76521 -27.93700 -27.90923 -26.36033 -24.40989 -24.12400 -23.20630 -21.77715 -21.04580 -20.43099 -19.07656 -18.44756 -17.43535 -16.83859 -16.61508 -16.40176 -16.37091 -15.91150 -15.48268 -15.31049 -15.03528 -14.79732 -14.49011 -14.46318 -14.25609 -14.10823 -13.90549 -13.51239 -13.44449 -13.33054 -12.96285 -12.82913 -12.78616 -12.76144 -12.68531 -12.42440 -12.30687 -12.18948 -12.02591 -11.95621 -11.77716 -11.67003 -11.60301 -11.38930 -11.22867 -11.05133 -10.80597 -10.59655 -9.91726 -9.05776 -8.88765 -8.18535 -6.27567 0.42744 0.48500 1.40596 1.41633 1.53243 2.40572 2.41196 2.81397 3.13928 3.29426 3.79837 3.94721 3.99562 4.05383 4.11405 4.16896 4.23856 4.33717 4.38526 4.38926 4.48719 4.54292 4.54913 4.58184 4.68672 4.72220 4.76818 4.80061 4.86819 4.88936 4.93298 4.95015 5.07107 5.10796 5.12290 5.17247 5.18870 5.21938 5.28333 5.31929 5.37462 5.38724 5.41378 5.49939 5.59569 5.62859 5.64424 5.69143 5.82982 5.86603 6.09548 6.42133 6.47407 6.70979 6.89831 7.41853 8.92610 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003378 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.203280 B = 8287.999789 C =10183.218356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.107 3.893 4 C -0.157 4.157 5 C -0.078 4.078 6 C -0.114 4.114 7 C -0.039 4.039 8 H 0.098 0.902 9 C -0.126 4.126 10 C 0.068 3.932 11 N -0.532 5.532 12 C 0.211 3.789 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.263 1.263 21 C 0.062 3.938 22 C -0.100 4.100 23 C -0.094 4.094 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.087 4.087 27 C -0.209 4.209 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.025 0.975 38 H -0.046 1.046 39 H 0.001 0.999 40 H 0.263 0.737 41 H 0.008 0.992 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.055 0.945 52 H 0.119 0.881 53 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 -19.791 6.564 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.062 3.938 4 C -0.176 4.176 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.057 4.057 8 H 0.116 0.884 9 C -0.184 4.184 10 C -0.060 4.060 11 N -0.255 5.255 12 C 0.085 3.915 13 C -0.552 4.552 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.577 5.577 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.188 1.188 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.206 4.206 25 C -0.196 4.196 26 C -0.105 4.105 27 C -0.228 4.228 28 H 0.077 0.923 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.043 0.957 38 H -0.029 1.029 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.137 0.863 53 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.842 -19.722 6.963 21.265 hybrid contribution -0.855 1.224 -1.213 1.924 sum 2.987 -18.498 5.751 19.600 Atomic orbital electron populations 1.23302 0.76799 1.05460 1.01968 1.86027 1.23162 1.26760 1.88900 1.19202 0.92841 0.84374 0.97391 1.20632 0.91489 0.99094 1.06366 1.21087 1.00700 0.90436 0.97369 1.19925 0.93715 0.95178 1.02652 1.20264 1.00880 0.90134 0.94468 0.88384 1.21629 1.00431 0.99978 0.96337 1.22155 0.96683 0.90420 0.96787 1.61986 1.05435 1.05180 1.52908 1.19367 0.92434 0.89644 0.90073 1.21436 1.05598 0.92268 1.35933 0.91793 1.25877 0.95773 1.03004 0.94970 1.70091 1.18554 1.29163 1.39884 0.85460 0.78242 0.78523 0.78907 1.19937 1.20915 1.18761 1.22180 0.90882 0.99778 0.93739 1.21774 0.93678 0.99498 0.98780 1.21090 0.94631 0.96118 0.99512 1.21884 1.00393 0.96644 1.01679 1.21771 0.98908 0.98942 0.99959 1.20951 0.94569 0.97307 0.97653 1.21378 1.00818 0.91945 1.08616 0.92282 0.86137 0.91977 0.83880 0.83544 0.92853 0.94061 0.92081 0.93664 0.95658 1.02854 0.98064 0.92840 0.97360 0.91789 0.91862 0.90848 0.91819 0.94259 0.92849 0.91775 0.91978 0.91983 0.92573 0.86317 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.09 10.50 -92.47 -0.97 -8.06 16 3 C 0.11 2.50 6.69 22.51 0.15 2.65 16 4 C -0.16 -3.49 9.99 22.36 0.22 -3.27 16 5 C -0.08 -1.77 9.66 22.25 0.22 -1.55 16 6 C -0.11 -2.99 4.78 -19.85 -0.09 -3.09 16 7 C -0.04 -1.13 2.46 -11.54 -0.03 -1.16 16 8 H 0.10 2.66 4.31 -2.39 -0.01 2.64 16 9 C -0.13 -3.79 8.90 71.98 0.64 -3.15 16 10 C 0.07 2.49 4.09 86.30 0.35 2.84 16 11 N -0.53 -22.74 3.87 -900.79 -3.49 -26.22 16 12 C 0.21 11.39 4.63 85.56 0.40 11.79 16 13 C -0.51 -29.16 8.28 25.60 0.21 -28.94 16 14 H 0.06 3.55 7.26 -2.91 -0.02 3.53 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 17 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.06 2.40 4.65 86.30 0.40 2.80 16 22 C -0.10 -2.90 3.67 30.59 0.11 -2.79 16 23 C -0.09 -2.32 2.92 -10.79 -0.03 -2.35 16 24 C -0.15 -3.90 8.96 71.98 0.64 -3.26 16 25 C -0.14 -2.63 9.19 71.98 0.66 -1.96 16 26 C -0.09 -2.28 8.76 22.26 0.20 -2.09 16 27 C -0.21 -4.88 9.04 22.37 0.20 -4.68 16 28 H 0.06 0.74 7.66 -2.39 -0.02 0.73 16 29 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 31 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.15 2.64 7.94 -2.91 -0.02 2.62 16 33 H 0.05 1.84 7.78 -2.39 -0.02 1.82 16 34 H 0.04 1.25 7.37 -2.39 -0.02 1.24 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.78 6.99 -2.38 -0.02 1.76 16 37 H 0.03 0.93 7.53 -2.39 -0.02 0.91 16 38 H -0.05 -2.75 8.12 -2.39 -0.02 -2.77 16 39 H 0.00 0.07 7.79 -2.39 -0.02 0.06 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.01 0.32 7.73 -2.39 -0.02 0.31 16 42 H 0.06 2.77 4.74 -2.38 -0.01 2.76 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.93 5.61 -2.39 -0.01 1.91 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.04 1.21 6.44 -2.39 -0.02 1.20 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.12 3.20 7.17 -2.91 -0.02 3.18 16 53 H 0.14 2.67 6.30 -2.91 -0.02 2.65 16 Total: -1.00 -65.90 408.49 4.53 -61.36 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.85 Total: 19.28 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 5.83 Total: -36.30 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -3.20 Total: -82.91 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.97 Total: -8.06 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.90 4.53 -61.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538297076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.635 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds