Wall clock time and date at job start Tue Mar 31 2020 12:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99410 * 2 1 4 4 C 1.38736 * 120.05276 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94449 * 180.25425 * 4 3 2 6 6 C 1.38272 * 120.05250 * 359.42108 * 5 4 3 7 7 C 1.50692 * 119.94206 * 180.28055 * 6 5 4 8 8 H 1.08999 * 109.47202 * 180.32392 * 7 6 5 9 9 C 1.53006 * 109.47410 * 300.32183 * 7 6 5 10 10 C 1.53000 * 109.47424 * 60.32219 * 7 6 5 11 11 N 1.46903 * 109.47281 * 179.72941 * 10 7 6 12 12 C 1.46899 * 110.99929 * 287.51928 * 11 10 7 13 13 C 1.50705 * 109.47114 * 166.55969 * 12 11 10 14 14 H 1.08003 * 119.99534 * 3.96395 * 13 12 11 15 15 C 1.37870 * 120.00099 * 183.95835 * 13 12 11 16 16 N 1.31517 * 120.00292 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46975 * 90.00454 * 17 15 13 19 19 H 1.48503 * 109.47164 * 209.99899 * 17 15 13 20 20 H 1.48498 * 109.47473 * 330.00078 * 17 15 13 21 21 C 1.46898 * 111.00061 * 163.56920 * 11 10 7 22 22 C 1.53001 * 109.47397 * 273.49007 * 21 11 10 23 23 C 1.53004 * 109.47151 * 65.65575 * 22 21 11 24 24 C 1.52995 * 109.47569 * 185.66048 * 22 21 11 25 25 C 1.53001 * 109.46513 * 305.65996 * 22 21 11 26 26 C 1.38266 * 120.10997 * 0.60265 * 6 5 4 27 27 C 1.38145 * 120.05627 * 359.67402 * 26 6 5 28 28 H 1.09004 * 109.46459 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46883 * 300.00057 * 1 2 3 30 30 H 1.08996 * 109.47183 * 60.00673 * 1 2 3 31 31 H 1.08001 * 120.02963 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.97523 * 179.72501 * 5 4 3 33 33 H 1.08996 * 109.46787 * 65.03685 * 9 7 6 34 34 H 1.08991 * 109.47356 * 185.04079 * 9 7 6 35 35 H 1.09002 * 109.46435 * 305.04385 * 9 7 6 36 36 H 1.09002 * 109.47122 * 299.72707 * 10 7 6 37 37 H 1.09002 * 109.47341 * 59.72706 * 10 7 6 38 38 H 1.08993 * 109.47862 * 286.56511 * 12 11 10 39 39 H 1.09011 * 109.46717 * 46.57060 * 12 11 10 40 40 H 0.96993 * 120.00574 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47051 * 33.48680 * 21 11 10 42 42 H 1.08998 * 109.47461 * 153.48785 * 21 11 10 43 43 H 1.08997 * 109.46919 * 47.85096 * 23 22 21 44 44 H 1.08999 * 109.46791 * 167.85105 * 23 22 21 45 45 H 1.08998 * 109.46803 * 287.84999 * 23 22 21 46 46 H 1.09004 * 109.47112 * 59.99068 * 24 22 21 47 47 H 1.08991 * 109.47406 * 179.97438 * 24 22 21 48 48 H 1.08999 * 109.46907 * 300.00039 * 24 22 21 49 49 H 1.08993 * 109.47437 * 64.69791 * 25 22 21 50 50 H 1.09000 * 109.46806 * 184.69865 * 25 22 21 51 51 H 1.08998 * 109.47543 * 304.69034 * 25 22 21 52 52 H 1.07998 * 119.97125 * 179.70063 * 26 6 5 53 53 H 1.08004 * 120.02513 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0058 6 6 3.3017 3.6759 -0.0015 7 6 3.9858 5.0186 -0.0020 8 1 3.2351 5.8089 -0.0024 9 6 4.8599 5.1463 1.2472 10 6 4.8601 5.1451 -1.2513 11 7 5.5219 6.4566 -1.2551 12 6 4.5637 7.5289 -1.5553 13 6 5.1851 8.8631 -1.2310 14 1 6.2124 8.9145 -0.9019 15 6 4.4421 10.0179 -1.3547 16 7 3.1909 9.9552 -1.7552 17 14 5.2125 11.6716 -0.9535 18 1 5.8358 12.2372 -2.1770 19 1 4.1639 12.5991 -0.4583 20 1 6.2503 11.4933 0.0936 21 6 6.6466 6.4760 -2.1998 22 6 7.9060 5.9554 -1.5043 23 6 7.7193 4.4789 -1.1495 24 6 9.1059 6.1071 -2.4414 25 6 8.1521 6.7598 -0.2263 26 6 1.9209 3.6048 -0.0015 27 6 1.2914 2.3751 -0.0011 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 4.0209 0.3801 0.0014 32 1 5.1344 2.5753 0.0108 33 1 5.6652 4.4130 1.2036 34 1 5.2839 6.1493 1.2931 35 1 4.2532 4.9673 2.1349 36 1 5.6139 4.3578 -1.2484 37 1 4.2381 5.0494 -2.1413 38 1 4.3024 7.4972 -2.6129 39 1 3.6646 7.3914 -0.9545 40 1 2.6681 10.7675 -1.8418 41 1 6.4144 5.8403 -3.0543 42 1 6.8162 7.4969 -2.5420 43 1 7.3339 3.9428 -2.0168 44 1 8.6780 4.0520 -0.8550 45 1 7.0131 4.3901 -0.3241 46 1 9.2388 7.1590 -2.6942 47 1 10.0031 5.7366 -1.9457 48 1 8.9305 5.5341 -3.3518 49 1 7.3366 6.5855 0.4755 50 1 9.0932 6.4457 0.2251 51 1 8.2021 7.8213 -0.4690 52 1 1.3339 4.5114 -0.0024 53 1 0.2128 2.3201 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553484560.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:48 Heat of formation + Delta-G solvation = -27.325590 kcal Electronic energy + Delta-G solvation = -28222.513225 eV Core-core repulsion = 24672.930195 eV Total energy + Delta-G solvation = -3549.583031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.17662 -38.65703 -37.52763 -35.09079 -33.33756 -32.00769 -31.05366 -28.89775 -27.67769 -27.22582 -26.74715 -26.60184 -25.88427 -23.80222 -22.74343 -22.40980 -20.81930 -19.08625 -18.36501 -18.11049 -16.44499 -16.08081 -15.81468 -15.50381 -14.93794 -14.67872 -14.47771 -14.15598 -13.91873 -13.80463 -13.48397 -13.39644 -13.01201 -12.96332 -12.69781 -12.41253 -12.11197 -12.06176 -11.97679 -11.77054 -11.70998 -11.39491 -11.20969 -11.11006 -10.98667 -10.83024 -10.77168 -10.67213 -10.55433 -10.46660 -10.22739 -10.09755 -9.96664 -9.86960 -9.27652 -9.10405 -8.90577 -8.38725 -7.96895 -7.11452 -5.98718 -3.98676 1.43210 1.53473 3.21407 3.32896 3.39721 3.43545 3.85825 4.45250 4.77418 4.85287 4.90920 4.97716 5.01171 5.23164 5.27383 5.33799 5.36325 5.37525 5.40393 5.49091 5.56918 5.61434 5.71427 5.82592 5.90851 6.00531 6.02705 6.09014 6.10242 6.12309 6.23379 6.24929 6.31125 6.35732 6.40949 6.44678 6.46075 6.54216 6.56636 6.65454 6.69288 6.76007 6.84545 6.92381 6.93918 7.02455 7.16278 7.35978 7.39327 7.42642 7.88400 8.18121 8.31350 8.62744 9.09981 9.65135 11.12057 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003622 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.986660 B = 7728.161825 C = 9388.796497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.111 3.889 4 C -0.151 4.151 5 C -0.076 4.076 6 C -0.096 4.096 7 C -0.046 4.046 8 H 0.082 0.918 9 C -0.127 4.127 10 C 0.051 3.949 11 N -0.525 5.525 12 C 0.192 3.808 13 C -0.499 4.499 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.892 3.108 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.072 3.928 22 C -0.061 4.061 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.078 4.078 27 C -0.206 4.206 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.018 0.982 38 H -0.017 1.017 39 H 0.034 0.966 40 H 0.259 0.741 41 H 0.018 0.982 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.030 0.970 51 H 0.052 0.948 52 H 0.125 0.875 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -16.865 3.204 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.170 4.170 5 C -0.094 4.094 6 C -0.097 4.097 7 C -0.064 4.064 8 H 0.100 0.900 9 C -0.184 4.184 10 C -0.077 4.077 11 N -0.249 5.249 12 C 0.067 3.933 13 C -0.538 4.538 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.720 3.280 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.057 4.057 22 C -0.062 4.062 23 C -0.200 4.200 24 C -0.198 4.198 25 C -0.181 4.181 26 C -0.096 4.096 27 C -0.224 4.224 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.001 0.999 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.036 0.964 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.071 0.929 52 H 0.143 0.857 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.715 -16.845 3.637 17.248 hybrid contribution -0.485 0.978 -0.775 1.339 sum 0.230 -15.867 2.863 16.125 Atomic orbital electron populations 1.23003 0.78760 1.03545 1.01348 1.86035 1.21102 1.27303 1.89182 1.18989 0.92381 0.83915 0.98117 1.20374 0.91231 0.98517 1.06870 1.20844 0.99905 0.90872 0.97823 1.20024 0.93322 0.95725 1.00612 1.20119 0.97662 0.92321 0.96328 0.90019 1.21687 0.98336 1.03194 0.95222 1.22426 0.96485 0.93727 0.95070 1.62008 1.10394 1.02355 1.50138 1.19770 0.91039 0.88302 0.94210 1.21192 0.98568 0.90308 1.43720 0.91735 1.24964 0.94840 0.99121 0.95687 1.69955 1.07944 1.28221 1.47872 0.86590 0.78909 0.83910 0.78547 1.20930 1.21429 1.19795 1.22052 0.90598 1.00996 0.92041 1.20508 0.94614 0.94963 0.96099 1.22112 1.00729 0.95885 1.01251 1.21861 0.97459 1.01485 0.98966 1.21682 0.99969 0.99537 0.96920 1.20967 0.94275 0.97003 0.97346 1.21184 0.99718 0.92407 1.09117 0.88555 0.92785 0.92747 0.85641 0.85448 0.93567 0.90302 0.94213 0.90578 0.96355 0.99888 0.94836 0.93106 0.96400 0.90135 0.93669 0.93935 0.91287 0.92747 0.93301 0.93456 0.90956 0.95047 0.92926 0.85675 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.42 -0.20 -4.06 16 3 C 0.11 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.15 -1.93 9.99 -39.43 -0.39 -2.33 16 5 C -0.08 -1.01 8.76 -39.60 -0.35 -1.35 16 6 C -0.10 -1.40 4.78 -104.60 -0.50 -1.90 16 7 C -0.05 -0.74 2.55 -91.77 -0.23 -0.97 16 8 H 0.08 1.53 6.31 -51.93 -0.33 1.20 16 9 C -0.13 -1.94 8.56 37.16 0.32 -1.63 16 10 C 0.05 0.88 3.50 -3.82 -0.01 0.87 16 11 N -0.53 -10.35 2.69 -236.06 -0.64 -10.98 16 12 C 0.19 4.75 4.52 -4.97 -0.02 4.73 16 13 C -0.50 -13.39 8.29 -34.44 -0.29 -13.67 16 14 H 0.06 1.71 7.23 -52.48 -0.38 1.33 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 16 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.07 1.32 3.96 -3.82 -0.02 1.31 16 22 C -0.06 -0.93 0.85 -154.51 -0.13 -1.06 16 23 C -0.14 -1.93 6.93 37.16 0.26 -1.67 16 24 C -0.14 -1.90 8.44 37.16 0.31 -1.58 16 25 C -0.12 -1.99 8.15 37.16 0.30 -1.69 16 26 C -0.08 -1.09 9.66 -39.61 -0.38 -1.48 16 27 C -0.21 -2.61 9.04 -39.44 -0.36 -2.97 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.51 7.16 -52.49 -0.38 1.13 16 33 H 0.05 0.63 6.25 -51.93 -0.32 0.31 16 34 H 0.08 1.38 7.21 -51.93 -0.37 1.00 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.17 3.43 -51.93 -0.18 0.99 16 37 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 38 H -0.02 -0.46 8.08 -51.93 -0.42 -0.88 16 39 H 0.03 0.89 6.36 -51.92 -0.33 0.56 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.32 7.78 -51.93 -0.40 -0.08 16 42 H 0.08 1.69 6.83 -51.93 -0.35 1.33 16 43 H 0.04 0.59 7.52 -51.93 -0.39 0.20 16 44 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 45 H 0.07 0.95 4.91 -51.93 -0.25 0.70 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.25 7.03 -51.93 -0.36 0.88 16 50 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.05 0.93 7.81 -51.93 -0.41 0.53 16 52 H 0.13 1.70 7.94 -52.49 -0.42 1.28 16 53 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -29.05 402.09 -9.28 -38.33 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -9.36 Total: 1.42 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.86 Total: -21.58 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.10 Total: -36.55 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.05 -9.28 -38.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553484560.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.004 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds