Wall clock time and date at job start Tue Mar 31 2020 12:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99410 * 2 1 4 4 C 1.38736 * 120.05276 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94449 * 180.25425 * 4 3 2 6 6 C 1.38272 * 120.05250 * 359.42108 * 5 4 3 7 7 C 1.50692 * 119.94206 * 180.28055 * 6 5 4 8 8 H 1.08999 * 109.47202 * 180.32392 * 7 6 5 9 9 C 1.53006 * 109.47410 * 300.32183 * 7 6 5 10 10 C 1.53000 * 109.47424 * 60.32219 * 7 6 5 11 11 N 1.46903 * 109.47281 * 179.72941 * 10 7 6 12 12 C 1.46899 * 110.99929 * 287.51928 * 11 10 7 13 13 C 1.50705 * 109.47114 * 166.55969 * 12 11 10 14 14 H 1.08003 * 119.99534 * 3.96395 * 13 12 11 15 15 C 1.37870 * 120.00099 * 183.95835 * 13 12 11 16 16 N 1.31517 * 120.00292 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46975 * 90.00454 * 17 15 13 19 19 H 1.48503 * 109.47164 * 209.99899 * 17 15 13 20 20 H 1.48498 * 109.47473 * 330.00078 * 17 15 13 21 21 C 1.46898 * 111.00061 * 163.56920 * 11 10 7 22 22 C 1.53001 * 109.47397 * 273.49007 * 21 11 10 23 23 C 1.53004 * 109.47151 * 65.65575 * 22 21 11 24 24 C 1.52995 * 109.47569 * 185.66048 * 22 21 11 25 25 C 1.53001 * 109.46513 * 305.65996 * 22 21 11 26 26 C 1.38266 * 120.10997 * 0.60265 * 6 5 4 27 27 C 1.38145 * 120.05627 * 359.67402 * 26 6 5 28 28 H 1.09004 * 109.46459 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46883 * 300.00057 * 1 2 3 30 30 H 1.08996 * 109.47183 * 60.00673 * 1 2 3 31 31 H 1.08001 * 120.02963 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.97523 * 179.72501 * 5 4 3 33 33 H 1.08996 * 109.46787 * 65.03685 * 9 7 6 34 34 H 1.08991 * 109.47356 * 185.04079 * 9 7 6 35 35 H 1.09002 * 109.46435 * 305.04385 * 9 7 6 36 36 H 1.09002 * 109.47122 * 299.72707 * 10 7 6 37 37 H 1.09002 * 109.47341 * 59.72706 * 10 7 6 38 38 H 1.08993 * 109.47862 * 286.56511 * 12 11 10 39 39 H 1.09011 * 109.46717 * 46.57060 * 12 11 10 40 40 H 0.96993 * 120.00574 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47051 * 33.48680 * 21 11 10 42 42 H 1.08998 * 109.47461 * 153.48785 * 21 11 10 43 43 H 1.08997 * 109.46919 * 47.85096 * 23 22 21 44 44 H 1.08999 * 109.46791 * 167.85105 * 23 22 21 45 45 H 1.08998 * 109.46803 * 287.84999 * 23 22 21 46 46 H 1.09004 * 109.47112 * 59.99068 * 24 22 21 47 47 H 1.08991 * 109.47406 * 179.97438 * 24 22 21 48 48 H 1.08999 * 109.46907 * 300.00039 * 24 22 21 49 49 H 1.08993 * 109.47437 * 64.69791 * 25 22 21 50 50 H 1.09000 * 109.46806 * 184.69865 * 25 22 21 51 51 H 1.08998 * 109.47543 * 304.69034 * 25 22 21 52 52 H 1.07998 * 119.97125 * 179.70063 * 26 6 5 53 53 H 1.08004 * 120.02513 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0058 6 6 3.3017 3.6759 -0.0015 7 6 3.9858 5.0186 -0.0020 8 1 3.2351 5.8089 -0.0024 9 6 4.8599 5.1463 1.2472 10 6 4.8601 5.1451 -1.2513 11 7 5.5219 6.4566 -1.2551 12 6 4.5637 7.5289 -1.5553 13 6 5.1851 8.8631 -1.2310 14 1 6.2124 8.9145 -0.9019 15 6 4.4421 10.0179 -1.3547 16 7 3.1909 9.9552 -1.7552 17 14 5.2125 11.6716 -0.9535 18 1 5.8358 12.2372 -2.1770 19 1 4.1639 12.5991 -0.4583 20 1 6.2503 11.4933 0.0936 21 6 6.6466 6.4760 -2.1998 22 6 7.9060 5.9554 -1.5043 23 6 7.7193 4.4789 -1.1495 24 6 9.1059 6.1071 -2.4414 25 6 8.1521 6.7598 -0.2263 26 6 1.9209 3.6048 -0.0015 27 6 1.2914 2.3751 -0.0011 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 4.0209 0.3801 0.0014 32 1 5.1344 2.5753 0.0108 33 1 5.6652 4.4130 1.2036 34 1 5.2839 6.1493 1.2931 35 1 4.2532 4.9673 2.1349 36 1 5.6139 4.3578 -1.2484 37 1 4.2381 5.0494 -2.1413 38 1 4.3024 7.4972 -2.6129 39 1 3.6646 7.3914 -0.9545 40 1 2.6681 10.7675 -1.8418 41 1 6.4144 5.8403 -3.0543 42 1 6.8162 7.4969 -2.5420 43 1 7.3339 3.9428 -2.0168 44 1 8.6780 4.0520 -0.8550 45 1 7.0131 4.3901 -0.3241 46 1 9.2388 7.1590 -2.6942 47 1 10.0031 5.7366 -1.9457 48 1 8.9305 5.5341 -3.3518 49 1 7.3366 6.5855 0.4755 50 1 9.0932 6.4457 0.2251 51 1 8.2021 7.8213 -0.4690 52 1 1.3339 4.5114 -0.0024 53 1 0.2128 2.3201 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553484560.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:47 Heat of formation + Delta-G solvation = -41.019484 kcal Electronic energy + Delta-G solvation = -28223.107037 eV Core-core repulsion = 24672.930195 eV Total energy + Delta-G solvation = -3550.176842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17700 -39.98795 -38.62404 -36.44800 -35.06357 -33.75912 -32.05997 -29.98920 -29.32666 -28.14792 -27.99899 -27.87764 -27.27731 -25.51106 -24.00481 -23.56804 -22.25911 -20.47540 -19.65518 -19.05519 -18.44255 -17.15542 -16.80745 -16.67291 -16.61061 -16.08747 -15.81425 -15.56517 -15.18708 -14.94260 -14.71869 -14.50512 -14.40091 -14.19109 -14.02937 -13.78786 -13.53712 -13.34730 -13.25402 -12.98044 -12.82472 -12.78340 -12.71942 -12.61900 -12.37408 -12.32455 -12.18709 -11.97270 -11.87908 -11.71759 -11.67425 -11.45516 -11.38321 -11.33268 -11.05398 -10.78216 -10.51114 -9.92416 -9.01430 -8.82651 -8.14741 -6.22271 0.41621 0.47971 1.40654 1.41468 1.52807 2.40749 2.42469 2.81021 3.17166 3.35492 3.81395 3.94871 3.99341 4.09695 4.12939 4.14986 4.30094 4.33928 4.39310 4.45293 4.49020 4.54525 4.60696 4.63252 4.72041 4.80084 4.81735 4.85285 4.91240 4.96523 5.00580 5.05064 5.09530 5.11917 5.17859 5.19099 5.23145 5.29310 5.31377 5.35377 5.37999 5.42672 5.44347 5.52822 5.61509 5.73064 5.74825 5.82129 5.83708 5.87899 6.16184 6.46944 6.50671 6.76428 6.95415 7.46434 8.96136 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003622 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.986660 B = 7728.161825 C = 9388.796497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.108 3.892 4 C -0.154 4.154 5 C -0.074 4.074 6 C -0.112 4.112 7 C -0.038 4.038 8 H 0.044 0.956 9 C -0.118 4.118 10 C 0.056 3.944 11 N -0.517 5.517 12 C 0.210 3.790 13 C -0.505 4.505 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.937 5.937 17 Si 0.960 3.040 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.071 3.929 22 C -0.057 4.057 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.120 4.120 26 C -0.094 4.094 27 C -0.206 4.206 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.105 0.895 37 H -0.003 1.003 38 H -0.054 1.054 39 H 0.008 0.992 40 H 0.261 0.739 41 H 0.019 0.981 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.027 0.973 52 H 0.117 0.883 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -19.046 4.014 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.063 3.937 4 C -0.173 4.173 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.056 4.056 8 H 0.063 0.937 9 C -0.175 4.175 10 C -0.072 4.072 11 N -0.241 5.241 12 C 0.084 3.916 13 C -0.544 4.544 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.578 5.578 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.057 4.057 22 C -0.057 4.057 23 C -0.197 4.197 24 C -0.194 4.194 25 C -0.177 4.177 26 C -0.112 4.112 27 C -0.225 4.225 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.015 0.985 38 H -0.037 1.037 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.047 0.953 52 H 0.135 0.865 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.442 -19.045 4.451 19.710 hybrid contribution -1.095 1.557 -1.056 2.177 sum 1.346 -17.488 3.394 17.865 Atomic orbital electron populations 1.23308 0.76792 1.05494 1.01972 1.86028 1.23170 1.26615 1.88887 1.19176 0.92812 0.84364 0.97384 1.20640 0.91504 0.99012 1.06113 1.20964 1.00623 0.90350 0.97243 1.19875 0.93622 0.95150 1.02606 1.19938 0.96793 0.92613 0.96304 0.93712 1.21585 0.98741 1.02250 0.94924 1.22515 0.96939 0.92920 0.94823 1.62000 1.09577 1.02332 1.50142 1.19384 0.91236 0.89821 0.91187 1.21472 0.98565 0.91290 1.43054 0.91640 1.25829 0.95260 1.03008 0.95588 1.70092 1.09399 1.29214 1.49128 0.85525 0.78156 0.79209 0.78608 1.20249 1.21125 1.18790 1.22113 0.91743 0.99484 0.92393 1.20472 0.93321 0.96180 0.95758 1.22057 1.02145 0.94126 1.01332 1.21829 0.97309 1.01190 0.99075 1.21628 1.00762 0.98237 0.97080 1.21034 0.94388 0.97562 0.98264 1.21348 1.00840 0.91763 1.08536 0.86068 0.92003 0.92253 0.83637 0.83776 0.91294 0.92890 0.93460 0.87686 0.98499 1.03665 0.97366 0.93062 0.96232 0.93311 0.93113 0.91393 0.91672 0.93816 0.90999 0.92613 0.92470 0.92377 0.95347 0.86459 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.22 10.50 -92.42 -0.97 -8.19 16 3 C 0.11 2.62 6.69 22.51 0.15 2.77 16 4 C -0.15 -3.60 9.99 22.37 0.22 -3.37 16 5 C -0.07 -1.82 8.76 22.26 0.19 -1.62 16 6 C -0.11 -3.26 4.78 -19.85 -0.09 -3.36 16 7 C -0.04 -1.26 2.55 -11.54 -0.03 -1.29 16 8 H 0.04 1.82 6.31 -2.39 -0.02 1.81 16 9 C -0.12 -3.60 8.56 71.98 0.62 -2.99 16 10 C 0.06 1.98 3.50 86.30 0.30 2.28 16 11 N -0.52 -21.26 2.69 -900.77 -2.43 -23.69 16 12 C 0.21 11.13 4.52 85.56 0.39 11.51 16 13 C -0.51 -28.31 8.29 25.60 0.21 -28.09 16 14 H 0.07 3.59 7.23 -2.91 -0.02 3.57 16 15 C 0.00 0.02 5.46 84.65 0.46 0.49 16 16 N -0.94 -57.02 13.29 21.45 0.28 -56.74 16 17 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 21 C 0.07 2.68 3.96 86.30 0.34 3.02 16 22 C -0.06 -1.65 0.85 -52.18 -0.04 -1.69 16 23 C -0.14 -3.33 6.93 71.98 0.50 -2.83 16 24 C -0.14 -3.39 8.44 71.98 0.61 -2.78 16 25 C -0.12 -3.72 8.15 71.98 0.59 -3.14 16 26 C -0.09 -2.71 9.66 22.25 0.22 -2.49 16 27 C -0.21 -5.08 9.04 22.36 0.20 -4.88 16 28 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.14 2.98 7.16 -2.91 -0.02 2.96 16 33 H 0.07 1.77 6.25 -2.39 -0.01 1.75 16 34 H 0.05 1.89 7.21 -2.39 -0.02 1.87 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.11 3.11 3.43 -2.39 -0.01 3.10 16 37 H 0.00 -0.13 8.05 -2.39 -0.02 -0.15 16 38 H -0.05 -3.22 8.08 -2.39 -0.02 -3.24 16 39 H 0.01 0.48 6.36 -2.38 -0.02 0.46 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.02 0.72 7.78 -2.39 -0.02 0.70 16 42 H 0.05 2.13 6.83 -2.39 -0.02 2.12 16 43 H 0.05 1.17 7.52 -2.39 -0.02 1.15 16 44 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 45 H 0.06 1.60 4.91 -2.39 -0.01 1.59 16 46 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.06 1.94 7.03 -2.39 -0.02 1.92 16 50 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.03 0.99 7.81 -2.39 -0.02 0.97 16 52 H 0.12 3.43 7.94 -2.91 -0.02 3.41 16 53 H 0.14 2.82 6.30 -2.91 -0.02 2.80 16 Total: -1.00 -65.74 402.09 5.72 -60.03 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.86 Total: 18.84 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 5.94 Total: -37.10 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.14 Total: -80.43 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.97 Total: -8.19 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.74 5.72 -60.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553484560.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.006 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds