Wall clock time and date at job start Tue Mar 31 2020 12:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47185 * 2 1 4 4 C 1.53004 * 109.47062 * 179.56743 * 3 2 1 5 5 C 1.52994 * 109.47099 * 182.43616 * 4 3 2 6 6 N 1.46896 * 109.47552 * 299.57145 * 3 2 1 7 7 C 1.46895 * 111.00200 * 154.62206 * 6 3 2 8 8 C 1.53004 * 109.47329 * 287.73423 * 7 6 3 9 9 C 1.46903 * 111.00021 * 278.57915 * 6 3 2 10 10 C 1.50697 * 109.47301 * 163.92322 * 9 6 3 11 11 C 1.38287 * 119.97327 * 269.97705 * 10 9 6 12 12 C 1.38239 * 120.11336 * 180.02562 * 11 10 9 13 13 C 1.38164 * 120.05854 * 359.68015 * 12 11 10 14 14 C 1.38715 * 119.93896 * 0.61937 * 13 12 11 15 15 O 1.35902 * 120.05500 * 179.68076 * 14 13 12 16 16 C 1.42898 * 117.00083 * 359.71952 * 15 14 13 17 17 C 1.52999 * 109.47078 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47187 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99659 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00338 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99597 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00236 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46749 * 60.00097 * 22 20 18 24 24 H 1.48494 * 109.46979 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46849 * 300.00424 * 22 20 18 26 26 C 1.38119 * 119.97359 * 89.99910 * 10 9 6 27 27 H 1.08997 * 109.47139 * 185.06264 * 1 2 3 28 28 H 1.08998 * 109.47271 * 305.06660 * 1 2 3 29 29 H 1.09000 * 109.46476 * 65.05874 * 1 2 3 30 30 H 1.09001 * 109.47024 * 239.99873 * 2 1 3 31 31 H 1.09001 * 109.46509 * 120.00124 * 2 1 3 32 32 H 1.09005 * 109.47392 * 59.57217 * 3 2 1 33 33 H 1.09004 * 109.47394 * 302.43932 * 4 3 2 34 34 H 1.09001 * 109.46462 * 62.44153 * 4 3 2 35 35 H 1.09001 * 109.47177 * 166.27029 * 5 4 3 36 36 H 1.09004 * 109.47518 * 286.26991 * 5 4 3 37 37 H 1.09003 * 109.47652 * 46.26724 * 5 4 3 38 38 H 1.08994 * 109.47543 * 47.73698 * 7 6 3 39 39 H 1.09006 * 109.47401 * 167.74048 * 7 6 3 40 40 H 1.08998 * 109.47568 * 186.43428 * 8 7 6 41 41 H 1.09002 * 109.47000 * 306.44604 * 8 7 6 42 42 H 1.09001 * 109.46460 * 66.43680 * 8 7 6 43 43 H 1.09003 * 109.46888 * 43.92108 * 9 6 3 44 44 H 1.08999 * 109.46881 * 283.92115 * 9 6 3 45 45 H 1.08006 * 119.94162 * 359.97438 * 11 10 9 46 46 H 1.08006 * 119.97094 * 179.97438 * 12 11 10 47 47 H 1.07997 * 120.03337 * 180.29255 * 13 12 11 48 48 H 1.08999 * 109.47053 * 300.00178 * 16 15 14 49 49 H 1.08999 * 109.46831 * 60.00142 * 16 15 14 50 50 H 1.08999 * 109.47018 * 299.99824 * 17 16 15 51 51 H 1.08995 * 109.47121 * 59.99837 * 17 16 15 52 52 H 0.97000 * 119.99389 * 179.97438 * 21 20 18 53 53 H 1.08003 * 120.02795 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0109 5 6 4.0796 2.8837 0.0722 6 7 1.5589 2.1320 -1.2045 7 6 1.4861 3.5829 -0.9869 8 6 0.3123 3.9012 -0.0585 9 6 2.4025 1.8154 -2.3648 10 6 1.6803 2.1991 -3.6306 11 6 0.8641 1.2811 -4.2657 12 6 0.2007 1.6298 -5.4273 13 6 0.3465 2.8991 -5.9531 14 6 1.1696 3.8198 -5.3214 15 8 1.3199 5.0669 -5.8401 16 6 0.6050 5.3599 -7.0422 17 6 0.8971 6.7992 -7.4713 18 6 0.1427 7.1085 -8.7386 19 1 -0.4822 6.3538 -9.1930 20 6 0.2503 8.3549 -9.3183 21 7 1.0116 9.2737 -8.7653 22 14 -0.6842 8.7380 -10.8897 23 1 -2.1411 8.5780 -10.6506 24 1 -0.4008 10.1350 -11.3060 25 1 -0.2531 7.8053 -11.9618 26 6 1.8346 3.4672 -4.1557 27 1 -0.3633 -1.0236 0.0907 28 1 -0.3634 0.5904 0.8411 29 1 -0.3632 0.4334 -0.9319 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6705 1.9586 0.8861 33 1 3.9272 0.8934 0.8822 34 1 3.9397 0.9647 -0.8964 35 1 5.1402 2.8837 0.3239 36 1 3.9362 3.3614 -0.8970 37 1 3.5255 3.4330 0.8334 38 1 2.4138 3.9290 -0.5313 39 1 1.3405 4.0869 -1.9424 40 1 0.1874 4.9817 0.0121 41 1 -0.5984 3.4554 -0.4584 42 1 0.5118 3.4930 0.9323 43 1 2.6159 0.7465 -2.3779 44 1 3.3373 2.3717 -2.2969 45 1 0.7453 0.2897 -3.8539 46 1 -0.4360 0.9109 -5.9216 47 1 -0.1757 3.1726 -6.8580 48 1 0.9214 4.6753 -7.8292 49 1 -0.4643 5.2426 -6.8668 50 1 0.5810 7.4841 -6.6844 51 1 1.9664 6.9161 -7.6467 52 1 1.0875 10.1505 -9.1733 53 1 2.4728 4.1836 -3.6598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563776568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:08 Heat of formation + Delta-G solvation = -42.427616 kcal Electronic energy + Delta-G solvation = -27366.608427 eV Core-core repulsion = 23816.370524 eV Total energy + Delta-G solvation = -3550.237904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26234 -40.28423 -38.35267 -35.49103 -34.57815 -33.01617 -32.83874 -32.58443 -30.88619 -30.16579 -27.57731 -26.97382 -26.04229 -23.61344 -23.51833 -22.90154 -22.56485 -21.74821 -20.35952 -19.09586 -18.18788 -17.18099 -16.97371 -16.96086 -16.79861 -16.42242 -16.28183 -16.02174 -15.36060 -14.70736 -14.64124 -14.40813 -14.33400 -14.29562 -14.10805 -13.92677 -13.70207 -13.40704 -13.26744 -13.05313 -12.91086 -12.62459 -12.60249 -12.54047 -12.50165 -12.37452 -12.25267 -12.10095 -11.83643 -11.74533 -11.63354 -11.59399 -11.57821 -11.41180 -11.28978 -11.21110 -10.62742 -9.77737 -9.06243 -8.97735 -8.27817 -6.41798 0.38122 0.57396 1.39871 1.44039 1.52045 2.26899 2.51093 2.73873 3.06420 3.22005 3.80384 3.83057 3.92384 4.10405 4.14806 4.19010 4.21752 4.25066 4.25815 4.33211 4.43761 4.48772 4.49716 4.58088 4.60320 4.64201 4.68492 4.72099 4.73701 4.78156 4.84298 4.94985 4.96425 5.10865 5.13519 5.18115 5.20079 5.22087 5.28159 5.30163 5.36871 5.39855 5.44912 5.45161 5.48058 5.55238 5.65271 5.66432 5.70026 5.93256 6.06810 6.22222 6.32723 6.58305 6.72660 7.28338 8.85201 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.002366 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.495674 B =11832.951769 C =12360.838865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.082 3.918 4 C -0.153 4.153 5 C -0.161 4.161 6 N -0.520 5.520 7 C 0.022 3.978 8 C -0.139 4.139 9 C 0.097 3.903 10 C -0.035 4.035 11 C -0.140 4.140 12 C -0.079 4.079 13 C -0.225 4.225 14 C 0.106 3.894 15 O -0.343 6.343 16 C 0.086 3.914 17 C 0.030 3.970 18 C -0.548 4.548 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.163 4.163 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.049 0.951 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.124 0.876 48 H 0.058 0.942 49 H 0.057 0.943 50 H -0.003 1.003 51 H -0.002 1.002 52 H 0.267 0.733 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -21.616 19.929 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.026 4.026 4 C -0.192 4.192 5 C -0.218 4.218 6 N -0.243 5.243 7 C -0.106 4.106 8 C -0.196 4.196 9 C -0.030 4.030 10 C -0.036 4.036 11 C -0.159 4.159 12 C -0.097 4.097 13 C -0.244 4.244 14 C 0.061 3.939 15 O -0.258 6.258 16 C 0.012 3.988 17 C -0.008 4.008 18 C -0.585 4.585 19 H 0.088 0.912 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.182 4.182 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.142 0.858 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.016 0.984 51 H 0.016 0.984 52 H 0.076 0.924 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.741 -21.436 19.899 29.300 hybrid contribution 0.386 1.276 -0.934 1.628 sum 2.128 -20.160 18.965 27.760 Atomic orbital electron populations 1.21576 0.95694 1.00552 1.01718 1.21500 0.96302 0.94677 1.02029 1.21935 0.92572 0.95641 0.92449 1.22244 0.96439 0.97202 1.03281 1.22088 1.01302 0.97019 1.01357 1.62159 1.50835 1.08038 1.03311 1.22585 0.99268 0.88638 1.00087 1.21699 0.98111 1.00720 0.99106 1.21103 0.93227 1.01933 0.86700 1.19716 0.96434 0.91654 0.95802 1.21117 0.98256 1.00620 0.95890 1.21217 0.98091 0.94708 0.95639 1.21459 1.03768 0.95929 1.03233 1.19484 0.95905 0.84362 0.94171 1.86072 1.68059 1.29430 1.42231 1.22824 0.94766 0.98196 0.83002 1.18949 0.96257 0.89947 0.95618 1.21365 1.28952 0.99021 1.09182 0.91166 1.26053 0.96215 0.95818 1.01602 1.70117 1.39828 1.05283 1.41793 0.85334 0.79026 0.77381 0.78323 1.18811 1.20694 1.18792 1.20385 1.04179 0.97958 0.95696 0.93128 0.93653 0.92952 0.91965 0.90905 0.90075 0.90402 0.91213 0.92312 0.93190 0.92331 0.92078 0.92501 0.92657 0.93068 0.91976 0.88203 0.93305 0.83567 0.83407 0.85816 0.92342 0.92439 0.98433 0.98388 0.92405 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.69 71.98 0.70 -1.17 16 2 C -0.11 -1.24 5.50 30.59 0.17 -1.08 16 3 C 0.08 1.08 1.81 44.92 0.08 1.16 16 4 C -0.15 -1.80 4.89 30.59 0.15 -1.65 16 5 C -0.16 -2.18 8.07 71.98 0.58 -1.60 16 6 N -0.52 -8.98 3.60 -875.52 -3.15 -12.13 16 7 C 0.02 0.43 5.09 86.31 0.44 0.87 16 8 C -0.14 -2.56 9.89 71.98 0.71 -1.85 16 9 C 0.10 1.77 3.56 85.56 0.30 2.07 16 10 C -0.04 -0.86 5.09 -19.88 -0.10 -0.96 16 11 C -0.14 -3.13 9.70 22.28 0.22 -2.91 16 12 C -0.08 -1.94 10.04 22.25 0.22 -1.72 16 13 C -0.22 -7.14 9.04 22.37 0.20 -6.94 16 14 C 0.11 3.86 6.69 22.51 0.15 4.01 16 15 O -0.34 -15.16 10.14 -92.44 -0.94 -16.10 16 16 C 0.09 3.92 4.68 71.98 0.34 4.26 16 17 C 0.03 1.65 5.34 29.85 0.16 1.81 16 18 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 19 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 22 Si 0.98 43.86 29.54 68.60 2.03 45.89 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 C -0.16 -5.04 8.05 22.37 0.18 -4.86 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.89 7.78 -2.39 -0.02 0.88 16 30 H 0.06 0.72 7.10 -2.39 -0.02 0.70 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.11 6.29 -2.38 -0.01 1.09 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.84 6.19 -2.39 -0.01 0.82 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.82 4.82 -2.38 -0.01 0.80 16 37 H 0.06 0.79 7.32 -2.39 -0.02 0.77 16 38 H 0.06 1.11 3.88 -2.39 -0.01 1.10 16 39 H 0.06 1.43 5.36 -2.38 -0.01 1.42 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.95 6.76 -2.39 -0.02 0.94 16 43 H 0.10 1.48 6.24 -2.39 -0.01 1.46 16 44 H 0.05 0.91 5.47 -2.39 -0.01 0.90 16 45 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 46 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.12 3.93 6.30 -2.91 -0.02 3.91 16 48 H 0.06 2.50 7.67 -2.39 -0.02 2.48 16 49 H 0.06 2.47 7.65 -2.39 -0.02 2.45 16 50 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 51 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 52 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 53 H 0.12 3.63 7.55 -2.91 -0.02 3.61 16 Total: -1.00 -65.80 401.36 4.29 -61.52 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.87 Total: 18.97 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 5.19 Total: -41.15 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -2.87 Total: -69.12 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.94 Total: -16.10 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.80 4.29 -61.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563776568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.090 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds