Wall clock time and date at job start Tue Mar 31 2020 13:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 N 1.46502 * 109.47008 * 179.97438 * 3 2 1 5 5 N 1.40080 * 126.03626 * 269.97272 * 4 3 2 6 6 C 1.30843 * 108.20533 * 180.02562 * 5 4 3 7 7 C 1.50698 * 125.90095 * 180.02562 * 6 5 4 8 8 C 1.39878 * 108.20054 * 359.77633 * 6 5 4 9 9 C 1.50694 * 126.04107 * 180.23689 * 8 6 5 10 10 N 1.46904 * 109.47155 * 270.15690 * 9 8 6 11 11 C 1.46846 * 111.00164 * 45.78747 * 10 9 8 12 12 C 1.53033 * 109.52392 * 185.84396 * 11 10 9 13 13 C 1.53121 * 109.27730 * 300.82091 * 12 11 10 14 14 C 1.53001 * 109.52363 * 177.56314 * 13 12 11 15 15 C 1.50703 * 109.47261 * 65.31602 * 14 13 12 16 16 H 1.08000 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99861 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99761 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47595 * 59.99642 * 19 17 15 21 21 H 1.48502 * 109.47154 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47083 * 299.99549 * 19 17 15 23 23 C 1.53114 * 109.16100 * 57.65070 * 13 12 11 24 24 C 1.46848 * 110.99902 * 170.00020 * 10 9 8 25 25 C 1.34950 * 126.03580 * 90.00067 * 4 3 2 26 26 C 1.50703 * 126.12738 * 359.93827 * 25 4 3 27 27 H 1.08996 * 109.47281 * 300.00495 * 1 2 3 28 28 H 1.09001 * 109.46759 * 60.00451 * 1 2 3 29 29 H 1.08994 * 109.47249 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47281 * 239.99505 * 2 1 3 31 31 H 1.09001 * 109.46759 * 119.99549 * 2 1 3 32 32 H 1.08996 * 109.47377 * 59.99564 * 3 2 1 33 33 H 1.09001 * 109.46865 * 299.99484 * 3 2 1 34 34 H 1.08993 * 109.47448 * 90.01700 * 7 6 5 35 35 H 1.09002 * 109.47103 * 210.01919 * 7 6 5 36 36 H 1.08998 * 109.46587 * 330.01923 * 7 6 5 37 37 H 1.09004 * 109.46795 * 30.15412 * 9 8 6 38 38 H 1.08998 * 109.47253 * 150.15363 * 9 8 6 39 39 H 1.09005 * 109.46227 * 305.85861 * 11 10 9 40 40 H 1.09003 * 109.46208 * 65.82476 * 11 10 9 41 41 H 1.09002 * 109.50541 * 180.88152 * 12 11 10 42 42 H 1.09001 * 109.50770 * 60.75912 * 12 11 10 43 43 H 1.09008 * 109.52362 * 297.75050 * 13 12 11 44 44 H 1.08997 * 109.46751 * 185.31395 * 14 13 12 45 45 H 1.08996 * 109.46911 * 305.31087 * 14 13 12 46 46 H 0.97008 * 119.99778 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.50340 * 182.40251 * 23 13 12 48 48 H 1.09001 * 109.53244 * 62.30856 * 23 13 12 49 49 H 1.08998 * 109.45891 * 294.17354 * 24 10 9 50 50 H 1.08994 * 109.46577 * 54.15310 * 24 10 9 51 51 H 1.09002 * 109.47152 * 90.02651 * 26 25 4 52 52 H 1.09001 * 109.46980 * 330.02751 * 26 25 4 53 53 H 1.09004 * 109.47113 * 210.02732 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3287 1.4431 1.1337 6 6 5.5744 1.4433 0.7336 7 6 6.7891 1.4435 1.6256 8 6 5.5841 1.4376 -0.6651 9 6 6.8086 1.4309 -1.5434 10 7 7.2124 2.8137 -1.8313 11 6 7.1986 3.6308 -0.6112 12 6 7.4813 5.0912 -0.9706 13 6 8.8468 5.1879 -1.6567 14 6 9.1085 6.6367 -2.0730 15 6 9.2266 7.4993 -0.8429 16 1 9.1247 7.0584 0.1377 17 6 9.4636 8.8517 -0.9695 18 7 9.5871 9.3886 -2.1636 19 14 9.6108 9.9208 0.5552 20 1 10.7370 9.4360 1.3930 21 1 9.8646 11.3270 0.1511 22 1 8.3482 9.8492 1.3336 23 6 8.8506 4.2903 -2.8971 24 6 8.5283 2.8530 -2.4819 25 6 4.2994 1.4422 -1.0903 26 6 3.8384 1.4407 -2.5251 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 7.0823 0.4159 1.8403 35 1 7.6085 1.9578 1.1235 36 1 6.5549 1.9569 2.5581 37 1 7.6204 0.9145 -1.0309 38 1 6.5831 0.9162 -2.4774 39 1 6.2207 3.5566 -0.1354 40 1 7.9648 3.2709 0.0756 41 1 7.4865 5.6949 -0.0631 42 1 6.7078 5.4560 -1.6466 43 1 9.6248 4.8598 -0.9673 44 1 10.0356 6.6889 -2.6437 45 1 8.2824 6.9927 -2.6885 46 1 9.7543 10.3400 -2.2527 47 1 9.8341 4.3217 -3.3660 48 1 8.0991 4.6421 -3.6039 49 1 9.2881 2.4968 -1.7864 50 1 8.5161 2.2141 -3.3649 51 1 3.7269 2.4680 -2.8720 52 1 2.8802 0.9265 -2.5983 53 1 4.5748 0.9266 -3.1428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564990889.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:46 Heat of formation + Delta-G solvation = 28.615812 kcal Electronic energy + Delta-G solvation = -27843.472106 eV Core-core repulsion = 24328.607628 eV Total energy + Delta-G solvation = -3514.864478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45399 -39.91285 -36.83519 -36.01386 -34.41235 -33.88146 -32.60028 -31.56052 -30.16738 -29.72843 -28.27180 -26.77949 -25.79835 -24.54836 -23.80411 -22.62474 -22.16374 -20.52653 -20.48221 -20.04403 -18.41415 -17.52076 -17.03974 -16.51140 -16.20527 -16.03152 -15.78767 -15.43337 -15.06912 -14.82092 -14.72003 -14.47454 -14.24146 -14.06076 -13.99184 -13.91026 -13.41742 -13.37231 -13.26697 -13.20423 -12.99230 -12.92560 -12.84803 -12.78265 -12.59456 -12.43872 -12.33083 -12.20078 -12.04237 -11.89325 -11.77896 -11.63409 -11.35316 -11.19372 -10.83712 -10.65782 -10.50489 -9.94128 -9.36526 -8.90583 -8.16582 -6.25727 0.93774 1.38345 1.41157 1.48781 1.61287 1.71578 2.41695 3.15793 3.25006 3.51354 3.76301 3.88325 3.94346 4.05819 4.11612 4.13321 4.16912 4.25484 4.31873 4.37006 4.44467 4.49395 4.51905 4.64754 4.66026 4.70965 4.73122 4.73946 4.79611 4.80116 4.86586 4.91942 5.00366 5.04628 5.05768 5.09924 5.13295 5.15237 5.20417 5.24880 5.33894 5.37856 5.42504 5.46657 5.47470 5.60517 5.77748 5.83838 5.91760 6.21389 6.26564 6.33121 6.38158 6.82476 6.90076 7.42082 8.95069 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002848 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.370368 B = 9829.297241 C =10381.704827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.126 3.874 4 N -0.376 5.376 5 N -0.336 5.336 6 C 0.073 3.927 7 C -0.080 4.080 8 C -0.253 4.253 9 C 0.141 3.859 10 N -0.538 5.538 11 C 0.076 3.924 12 C -0.092 4.092 13 C -0.073 4.073 14 C 0.035 3.965 15 C -0.529 4.529 16 H 0.057 0.943 17 C -0.002 4.002 18 N -0.934 5.934 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.270 1.270 23 C -0.105 4.105 24 C 0.067 3.933 25 C 0.103 3.897 26 C -0.086 4.086 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.047 0.953 44 H -0.012 1.012 45 H -0.014 1.014 46 H 0.262 0.738 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.034 0.966 50 H 0.094 0.906 51 H 0.081 0.919 52 H 0.087 0.913 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 -23.438 1.026 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.005 3.995 4 N -0.158 5.158 5 N -0.159 5.159 6 C -0.093 4.093 7 C -0.138 4.138 8 C -0.264 4.264 9 C 0.013 3.987 10 N -0.263 5.263 11 C -0.051 4.051 12 C -0.130 4.130 13 C -0.092 4.092 14 C -0.002 4.002 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.143 4.143 24 C -0.061 4.061 25 C -0.026 4.026 26 C -0.145 4.145 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.006 0.994 45 H 0.004 0.996 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.112 0.888 51 H 0.099 0.901 52 H 0.105 0.895 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.322 -23.082 1.628 28.317 hybrid contribution 1.302 0.951 0.686 1.752 sum -15.020 -22.131 2.314 26.847 Atomic orbital electron populations 1.21680 0.92706 1.03004 1.02914 1.21836 0.97831 0.94751 1.02416 1.22013 0.72933 0.99332 1.05183 1.48698 1.06858 1.57395 1.02865 1.77213 1.01761 1.27553 1.09345 1.22486 0.93721 0.98739 0.94353 1.20399 0.92040 1.03643 0.97737 1.19694 0.94701 1.19075 0.92924 1.20304 0.92253 0.88462 0.97658 1.62027 1.28202 1.10665 1.25396 1.22008 0.99767 0.92384 0.90982 1.21407 0.96601 0.95520 0.99483 1.21075 0.96250 0.95319 0.96525 1.18994 0.94114 0.92028 0.95060 1.21620 1.47838 0.93497 0.93780 0.92478 1.25934 0.95259 0.99791 0.98926 1.70096 1.50802 1.12449 1.24165 0.85610 0.79007 0.77533 0.79575 1.19185 1.20846 1.19477 1.21583 1.00817 0.94738 0.97188 1.22038 0.88673 0.96375 0.99004 1.21329 0.90500 0.98879 0.91876 1.20536 1.02987 1.03950 0.86978 0.92230 0.91051 0.91459 0.91159 0.93000 0.89278 0.87004 0.89234 0.90270 0.91165 0.94010 0.88791 0.91831 0.94907 0.93496 0.93939 0.93412 0.99393 0.99578 0.92947 0.91854 0.92702 0.94822 0.88775 0.90077 0.89458 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.64 6.26 30.59 0.19 -1.45 16 3 C 0.13 1.97 6.06 86.38 0.52 2.50 16 4 N -0.38 -8.79 3.61 -334.70 -1.21 -10.00 16 5 N -0.34 -9.68 12.58 -47.38 -0.60 -10.28 16 6 C 0.07 1.96 5.86 43.10 0.25 2.22 16 7 C -0.08 -1.81 9.86 71.24 0.70 -1.10 16 8 C -0.25 -6.26 4.20 -20.14 -0.08 -6.35 16 9 C 0.14 3.17 5.22 85.55 0.45 3.62 16 10 N -0.54 -14.92 4.80 -900.94 -4.32 -19.25 16 11 C 0.08 2.46 4.09 86.32 0.35 2.82 16 12 C -0.09 -3.71 5.15 30.65 0.16 -3.56 16 13 C -0.07 -3.10 2.20 -10.71 -0.02 -3.12 16 14 C 0.04 1.91 4.45 29.85 0.13 2.04 16 15 C -0.53 -30.81 8.45 25.60 0.22 -30.60 16 16 H 0.06 3.21 7.08 -2.91 -0.02 3.19 16 17 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 18 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 19 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 C -0.11 -3.65 5.38 30.64 0.16 -3.48 16 24 C 0.07 1.79 5.42 86.32 0.47 2.26 16 25 C 0.10 2.29 6.93 41.41 0.29 2.57 16 26 C -0.09 -1.29 9.69 71.24 0.69 -0.60 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.27 7.66 -2.39 -0.02 1.25 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.82 5.11 -2.39 -0.01 1.80 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 0.90 7.88 -2.39 -0.02 0.88 16 38 H 0.09 1.75 7.14 -2.39 -0.02 1.73 16 39 H 0.06 2.15 5.64 -2.38 -0.01 2.14 16 40 H 0.03 1.03 6.07 -2.39 -0.01 1.01 16 41 H 0.05 2.05 7.05 -2.39 -0.02 2.04 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 45 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 46 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 51 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.09 0.88 7.72 -2.39 -0.02 0.86 16 53 H 0.10 1.24 7.14 -2.38 -0.02 1.23 16 Total: -1.00 -71.70 404.94 2.69 -69.01 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.85 Total: 13.28 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 5.66 Total: -32.36 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -5.84 Total: -97.56 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.70 2.69 -69.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564990889.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.629 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds