Wall clock time and date at job start Tue Mar 31 2020 12:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52992 * 109.47223 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47592 * 59.99575 * 4 2 1 6 6 H 1.08003 * 120.00057 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00356 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99989 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46744 * 90.00434 * 9 7 5 11 11 H 1.48500 * 109.47304 * 210.00023 * 9 7 5 12 12 H 1.48498 * 109.47341 * 330.00626 * 9 7 5 13 13 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 14 14 N 1.46505 * 109.47212 * 300.00138 * 13 2 1 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 2 16 16 O 1.21280 * 120.00597 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99622 * 179.97438 * 15 14 13 18 18 C 1.53006 * 109.47180 * 60.00237 * 17 15 14 19 19 C 1.52992 * 109.47223 * 179.97438 * 18 17 15 20 20 C 1.53002 * 109.47106 * 60.00126 * 19 18 17 21 21 C 1.52996 * 109.47346 * 300.00019 * 20 19 18 22 22 C 1.53002 * 109.46891 * 300.00003 * 21 20 19 23 23 C 1.52989 * 109.47566 * 59.99870 * 22 21 20 24 24 C 1.52997 * 109.47482 * 300.00288 * 19 18 17 25 25 C 1.52997 * 109.47212 * 180.02562 * 17 15 14 26 26 C 1.53000 * 109.47328 * 59.99600 * 21 20 19 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 32 32 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 33 33 H 1.09002 * 109.47103 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47066 * 299.99881 * 4 2 1 35 35 H 0.96996 * 119.99885 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.46832 * 60.00321 * 13 2 1 38 38 H 0.96996 * 119.99606 * 0.02562 * 14 13 2 39 39 H 1.08996 * 109.47129 * 300.00474 * 18 17 15 40 40 H 1.08998 * 109.46505 * 60.00277 * 18 17 15 41 41 H 1.09002 * 109.47556 * 180.02562 * 19 18 17 42 42 H 1.08996 * 109.47407 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.46986 * 59.99764 * 20 19 18 44 44 H 1.09001 * 109.47372 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.47248 * 299.99310 * 22 21 20 46 46 H 1.09002 * 109.46838 * 180.02562 * 22 21 20 47 47 H 1.09000 * 109.47424 * 180.02562 * 23 22 21 48 48 H 1.09001 * 109.47289 * 299.99700 * 24 19 18 49 49 H 1.09004 * 109.47261 * 179.97438 * 24 19 18 50 50 H 1.09001 * 109.47289 * 299.99918 * 25 17 15 51 51 H 1.09002 * 109.47153 * 60.00002 * 25 17 15 52 52 H 1.08992 * 109.47399 * 180.02562 * 26 21 20 53 53 H 1.09004 * 109.46724 * 59.99817 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8713 -0.4814 -3.7320 8 7 2.6275 -1.5507 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 2.2253 1.4411 -5.6612 11 1 1.0838 -0.5805 -6.3615 12 1 -0.0607 1.0352 -4.9614 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5742 -1.4775 3.7808 17 6 1.3750 0.2193 4.8999 18 6 -0.1550 0.2204 4.8999 19 6 -0.6646 0.9414 6.1494 20 6 -0.1535 2.3835 6.1501 21 6 1.3764 2.3825 6.1501 22 6 1.8859 1.6603 7.3991 23 6 1.3749 0.2183 7.3985 24 6 -0.1551 0.2193 7.3983 25 6 1.8849 -0.5020 6.1492 26 6 1.8860 1.6615 4.9006 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7207 -1.2494 34 1 1.6767 -1.7488 -1.2493 35 1 2.8618 -1.8820 -4.7337 36 1 3.1301 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 -0.5180 0.7344 4.0099 40 1 -0.5190 -0.8070 4.8999 41 1 -1.7546 0.9418 6.1496 42 1 -0.5169 2.8974 7.0400 43 1 -0.5165 2.8980 5.2603 44 1 1.7405 3.4099 6.1502 45 1 1.5229 2.1740 8.2893 46 1 2.9759 1.6600 7.3993 47 1 1.7375 -0.2961 8.2885 48 1 -0.5192 -0.8081 7.3979 49 1 -0.5178 0.7332 8.2886 50 1 1.5212 -1.5295 6.1494 51 1 2.9749 -0.5024 6.1490 52 1 2.9760 1.6603 4.9009 53 1 1.5230 2.1759 4.0109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570958058.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:11 Heat of formation + Delta-G solvation = -107.744132 kcal Electronic energy + Delta-G solvation = -28826.528915 eV Core-core repulsion = 25273.458675 eV Total energy + Delta-G solvation = -3553.070240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71969 -40.38218 -38.60677 -35.33876 -34.29228 -33.51204 -33.50370 -33.27479 -29.12418 -27.97860 -27.77200 -26.85337 -26.70345 -25.17775 -23.57025 -22.33361 -22.25430 -21.04166 -19.79941 -18.64874 -18.36579 -17.62038 -16.88855 -16.42830 -16.36995 -15.59553 -15.44727 -15.34561 -15.23519 -15.12682 -14.81047 -14.45069 -14.23147 -14.12850 -14.12731 -13.96520 -13.93250 -13.60513 -13.30358 -13.28888 -12.87358 -12.72829 -12.60045 -12.35298 -12.24006 -11.99665 -11.85948 -11.83630 -11.78956 -11.75165 -11.72849 -11.55033 -11.48419 -11.06298 -10.89004 -10.54914 -10.53053 -10.52083 -10.35094 -10.06294 -8.14494 -6.22640 1.42386 1.42908 1.53324 1.63648 2.21642 2.44798 3.19996 3.46292 3.53532 3.58268 3.93815 4.03933 4.05644 4.16187 4.18013 4.20972 4.27915 4.28114 4.31461 4.32513 4.45395 4.45501 4.67320 4.69746 4.72461 4.77454 4.81802 4.85083 4.86651 4.94277 4.99798 5.09158 5.10490 5.12451 5.14106 5.17425 5.18529 5.21105 5.26884 5.29855 5.38316 5.45999 5.48667 5.50851 5.52247 5.56311 5.58202 5.62086 5.63298 5.78840 5.88983 6.29298 6.58487 6.92638 7.26537 7.45345 8.98185 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.027909 B = 0.002800 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.002984 B = 9996.844048 C =10312.218849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.141 3.859 14 N -0.705 5.705 15 C 0.511 3.489 16 O -0.593 6.593 17 C -0.061 4.061 18 C -0.101 4.101 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.108 4.108 23 C -0.083 4.083 24 C -0.108 4.108 25 C -0.087 4.087 26 C -0.101 4.101 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.069 0.931 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.411 0.589 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.048 0.952 51 H 0.048 0.952 52 H 0.054 0.946 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 11.759 25.345 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.182 1.182 13 C 0.016 3.984 14 N -0.358 5.358 15 C 0.299 3.701 16 O -0.473 6.473 17 C -0.064 4.064 18 C -0.139 4.139 19 C -0.099 4.099 20 C -0.144 4.144 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.125 4.125 26 C -0.139 4.139 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.073 0.927 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.773 10.964 25.280 28.630 hybrid contribution 0.333 -0.448 -1.602 1.697 sum -7.440 10.516 23.678 26.955 Atomic orbital electron populations 1.21685 0.93483 1.00929 1.01672 1.20702 0.96770 0.96325 0.92641 1.21686 0.99856 0.94551 1.01692 1.18963 0.94165 0.94148 0.92434 1.21592 1.30435 1.12078 0.90991 0.90779 1.25970 0.95665 0.95845 1.02794 1.70130 1.38856 1.25020 1.24096 0.85528 0.79247 0.78089 0.78683 1.20135 1.21633 1.18178 1.21204 0.97582 0.95325 0.84257 1.45997 1.53014 1.31965 1.04778 1.21379 0.79171 0.83892 0.85632 1.90659 1.40305 1.28801 1.87557 1.20695 0.97922 0.96667 0.91137 1.21596 0.91113 1.01107 1.00094 1.21055 1.00336 0.95242 0.93279 1.21573 0.94152 0.95530 1.03097 1.21056 0.96331 0.99241 0.93279 1.21568 1.00094 0.94620 0.98253 1.21078 0.96323 0.96389 0.96396 1.21572 0.94251 1.00454 0.98257 1.21300 0.99695 0.98150 0.93323 1.21598 1.00210 0.92006 1.00097 0.91213 0.92395 0.94534 0.94542 0.92353 0.91216 0.99771 0.99752 0.93186 0.93945 0.93942 0.75053 0.90443 0.92682 0.89485 0.90231 0.91018 0.89486 0.90104 0.92550 0.90570 0.92544 0.90096 0.93337 0.93321 0.92681 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 2.08 4.04 29.84 0.12 2.20 16 5 C -0.51 -27.52 7.65 25.60 0.20 -27.33 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 9 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 13 C 0.14 5.20 4.56 86.38 0.39 5.59 16 14 N -0.71 -20.18 4.74 -463.06 -2.20 -22.38 16 15 C 0.51 15.59 6.48 87.66 0.57 16.16 16 16 O -0.59 -23.87 15.98 -3.03 -0.05 -23.92 16 17 C -0.06 -1.30 0.61 -52.93 -0.03 -1.34 16 18 C -0.10 -1.74 4.37 30.59 0.13 -1.61 16 19 C -0.08 -0.98 3.19 -10.80 -0.03 -1.02 16 20 C -0.11 -1.06 5.19 30.59 0.16 -0.90 16 21 C -0.08 -0.98 3.19 -10.79 -0.03 -1.02 16 22 C -0.11 -1.35 5.19 30.59 0.16 -1.20 16 23 C -0.08 -1.26 3.19 -10.81 -0.03 -1.29 16 24 C -0.11 -1.35 5.19 30.60 0.16 -1.19 16 25 C -0.09 -1.93 3.76 30.58 0.11 -1.81 16 26 C -0.10 -1.74 4.37 30.60 0.13 -1.61 16 27 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 28 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 2.07 6.62 -2.39 -0.02 2.06 16 32 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 33 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 34 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 9.23 5.00 -92.71 -0.46 8.76 16 39 H 0.08 1.17 7.56 -2.39 -0.02 1.16 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 51 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 52 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.08 1.17 7.57 -2.39 -0.02 1.16 16 Total: -1.00 -69.58 383.66 4.06 -65.52 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.40 Total: 18.11 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 3.59 Total: -25.62 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -1.91 Total: -79.68 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.58 4.06 -65.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570958058.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.227 kcal (2) G-P(sol) polarization free energy of solvation -69.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds