Wall clock time and date at job start Tue Mar 31 2020 12:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99665 * 2 1 4 4 C 1.38739 * 120.05455 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94476 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05301 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94351 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47210 * 20.00189 * 7 6 5 9 9 C 1.53005 * 109.47148 * 260.00174 * 7 6 5 10 10 C 1.50701 * 109.47252 * 174.46339 * 9 7 6 11 11 H 1.08005 * 119.99672 * 354.73921 * 10 9 7 12 12 C 1.37875 * 120.00249 * 174.73689 * 10 9 7 13 13 N 1.31513 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00171 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46919 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47035 * 120.00188 * 14 12 10 17 17 H 1.48498 * 109.47237 * 240.00331 * 14 12 10 18 18 N 1.46895 * 109.47572 * 140.00156 * 7 6 5 19 19 C 1.46897 * 111.00067 * 273.97560 * 18 7 6 20 20 C 1.53004 * 109.47438 * 182.51115 * 19 18 7 21 21 C 1.52999 * 109.47328 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46981 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47350 * 60.00270 * 22 21 20 24 24 C 1.53011 * 109.47199 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47220 * 300.00089 * 22 21 20 26 26 C 1.38269 * 120.11450 * 0.27600 * 6 5 4 27 27 C 1.38139 * 120.05525 * 359.45090 * 26 6 5 28 28 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47207 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47661 * 59.99735 * 1 2 3 31 31 H 1.07994 * 120.02413 * 359.95741 * 4 3 2 32 32 H 1.08000 * 119.97118 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.46872 * 294.46372 * 9 7 6 34 34 H 1.08997 * 109.46720 * 54.46948 * 9 7 6 35 35 H 0.97001 * 119.99821 * 179.97438 * 13 12 10 36 36 H 1.00900 * 111.00532 * 150.01467 * 18 7 6 37 37 H 1.09000 * 109.47311 * 302.51163 * 19 18 7 38 38 H 1.08998 * 109.47425 * 62.50817 * 19 18 7 39 39 H 1.08991 * 109.47065 * 300.00293 * 20 19 18 40 40 H 1.09003 * 109.46949 * 59.99959 * 20 19 18 41 41 H 1.09003 * 109.46966 * 300.00349 * 21 20 19 42 42 H 1.09003 * 109.46823 * 60.00268 * 21 20 19 43 43 H 1.09000 * 109.46940 * 60.00218 * 23 22 21 44 44 H 1.09001 * 109.47160 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.46665 * 299.99926 * 23 22 21 46 46 H 1.09003 * 109.46875 * 59.99905 * 24 22 21 47 47 H 1.08991 * 109.47176 * 179.97438 * 24 22 21 48 48 H 1.09003 * 109.46696 * 300.00120 * 24 22 21 49 49 H 1.08996 * 109.47453 * 60.00263 * 25 22 21 50 50 H 1.09001 * 109.47399 * 180.02562 * 25 22 21 51 51 H 1.09000 * 109.47430 * 299.99836 * 25 22 21 52 52 H 1.08002 * 119.97276 * 179.70509 * 26 6 5 53 53 H 1.07994 * 120.03291 * 180.27931 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0111 4.9038 -0.3546 9 6 3.9947 5.5877 1.4175 10 6 4.7959 6.8639 1.4423 11 1 5.3233 7.1877 0.5571 12 6 4.8556 7.6181 2.5949 13 7 4.2138 7.2235 3.6729 14 14 5.8482 9.2003 2.6255 15 1 6.4702 9.4202 1.2951 16 1 4.9526 10.3403 2.9472 17 1 6.9104 9.0985 3.6582 18 7 3.2626 5.9360 -0.8933 19 6 3.7242 5.7960 -2.2808 20 6 2.9944 6.8085 -3.1658 21 6 3.4756 6.6631 -4.6109 22 6 2.7463 7.6760 -5.4956 23 6 3.0424 9.0928 -4.9996 24 6 3.2271 7.5302 -6.9409 25 6 1.2397 7.4176 -5.4314 26 6 1.9209 3.6048 0.0042 27 6 1.2914 2.3752 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.0208 0.3801 -0.0003 32 1 5.1345 2.5752 -0.0019 33 1 2.9720 5.7947 1.7323 34 1 4.4444 4.8632 2.0963 35 1 4.2561 7.7540 4.4839 36 1 3.3499 6.8904 -0.5777 37 1 4.7975 5.9803 -2.3270 38 1 3.5134 4.7865 -2.6338 39 1 1.9211 6.6243 -3.1196 40 1 3.2052 7.8180 -2.8129 41 1 4.5490 6.8476 -4.6566 42 1 3.2651 5.6536 -4.9641 43 1 4.1157 9.2769 -5.0455 44 1 2.5224 9.8144 -5.6297 45 1 2.6995 9.1964 -3.9702 46 1 3.0159 6.5209 -7.2940 47 1 2.7072 8.2515 -7.5712 48 1 4.3006 7.7141 -6.9869 49 1 0.8968 7.5212 -4.4020 50 1 0.7201 8.1390 -6.0621 51 1 1.0287 6.4083 -5.7848 52 1 1.3340 4.5114 0.0085 53 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582158976.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:41 Heat of formation + Delta-G solvation = -50.486801 kcal Electronic energy + Delta-G solvation = -27151.618938 eV Core-core repulsion = 23601.031562 eV Total energy + Delta-G solvation = -3550.587376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.81209 -38.34005 -37.67291 -35.63090 -33.20187 -31.88621 -30.62614 -29.52118 -28.40437 -27.36421 -27.31702 -27.10618 -25.04953 -23.70375 -22.33360 -21.65496 -21.02104 -19.55139 -18.56144 -17.83476 -16.52288 -15.90411 -15.56980 -15.44863 -15.05276 -14.88645 -14.66368 -14.32599 -14.21907 -13.91900 -13.78438 -13.58324 -13.19857 -12.94547 -12.56777 -12.53799 -12.31875 -12.21955 -11.85529 -11.77994 -11.73551 -11.69944 -11.45240 -11.21684 -11.12651 -11.03697 -10.85319 -10.72908 -10.55468 -10.51685 -10.37823 -10.36440 -10.19150 -10.10055 -9.44342 -9.14493 -8.54689 -8.42334 -7.69418 -7.57444 -6.05398 -4.09354 1.79883 1.92497 3.26977 3.35370 3.37849 3.47783 4.23622 4.41158 4.60365 4.77627 4.78837 5.00263 5.05912 5.18161 5.22820 5.28329 5.31119 5.35585 5.42282 5.46487 5.48826 5.57744 5.59281 5.67887 5.71990 5.74995 5.82702 5.82882 5.86778 5.92341 5.94739 5.98199 6.04201 6.09537 6.13841 6.23475 6.26217 6.31670 6.37605 6.51818 6.56477 6.61051 6.68042 6.77442 6.86051 7.17951 7.23271 7.50431 7.61840 7.70916 7.93348 8.04425 8.26342 8.33177 8.97153 9.55233 11.05062 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.005671 B = 0.004887 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4936.525776 B = 5728.433822 C = 9969.901015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.105 3.895 4 C -0.156 4.156 5 C -0.086 4.086 6 C -0.085 4.085 7 C 0.131 3.869 8 H 0.039 0.961 9 C 0.027 3.973 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.681 5.681 19 C 0.061 3.939 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.069 4.069 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.048 4.048 27 C -0.213 4.213 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.357 0.643 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.052 0.948 52 H 0.131 0.869 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 -5.791 -15.667 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.175 4.175 5 C -0.104 4.104 6 C -0.086 4.086 7 C 0.021 3.979 8 H 0.057 0.943 9 C -0.010 4.010 10 C -0.563 4.563 11 H 0.071 0.929 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.314 5.314 19 C -0.069 4.069 20 C -0.158 4.158 21 C -0.144 4.144 22 C -0.069 4.069 23 C -0.202 4.202 24 C -0.198 4.198 25 C -0.200 4.200 26 C -0.067 4.067 27 C -0.232 4.232 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.178 0.822 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.149 0.851 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.690 -6.337 -15.558 18.082 hybrid contribution 1.188 1.403 0.238 1.854 sum -5.502 -4.933 -15.320 17.009 Atomic orbital electron populations 1.22952 0.79106 1.03185 1.01261 1.86006 1.20835 1.27601 1.89455 1.18953 0.92317 0.83782 0.98893 1.20246 0.91182 0.98200 1.07829 1.20860 0.99683 0.91196 0.98710 1.20129 0.93825 0.95213 0.99427 1.20557 0.92657 0.88195 0.96444 0.94317 1.19277 0.98265 0.95184 0.88299 1.21174 1.30668 1.07072 0.97360 0.92873 1.24972 0.95501 0.97767 0.95685 1.69975 1.42196 1.38671 1.01850 0.86589 0.80046 0.83637 0.78038 1.19814 1.20962 1.21045 1.60447 1.58471 1.11985 1.00538 1.21930 0.96169 0.98801 0.89953 1.21689 1.00990 0.99494 0.93588 1.21590 0.99543 0.98416 0.94848 1.20535 0.95686 0.95722 0.94996 1.21941 1.01327 0.95380 1.01533 1.21877 1.00891 1.01356 0.95693 1.21927 0.94866 1.01071 1.02169 1.20839 0.94461 0.96554 0.94823 1.21208 0.99416 0.92623 1.09905 0.88845 0.92830 0.92975 0.86055 0.85933 0.95029 0.96273 0.92960 0.82186 0.96084 0.92195 0.91130 0.91844 0.92281 0.92212 0.92843 0.93171 0.91899 0.92866 0.92983 0.92844 0.91911 0.93216 0.92907 0.85065 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.68 10.50 -19.43 -0.20 -4.89 16 3 C 0.10 1.68 6.69 -39.21 -0.26 1.41 16 4 C -0.16 -2.50 9.99 -39.43 -0.39 -2.90 16 5 C -0.09 -1.47 9.66 -39.61 -0.38 -1.85 16 6 C -0.08 -1.58 4.79 -104.60 -0.50 -2.08 16 7 C 0.13 2.65 2.19 -68.86 -0.15 2.50 16 8 H 0.04 0.81 7.60 -51.93 -0.39 0.41 16 9 C 0.03 0.67 4.53 -27.88 -0.13 0.55 16 10 C -0.52 -13.97 8.05 -34.44 -0.28 -14.25 16 11 H 0.05 1.38 7.68 -52.48 -0.40 0.98 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 14 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 N -0.68 -12.46 5.57 -107.95 -0.60 -13.06 16 19 C 0.06 0.95 5.51 -3.82 -0.02 0.93 16 20 C -0.12 -1.57 4.74 -26.73 -0.13 -1.69 16 21 C -0.11 -1.19 4.27 -26.73 -0.11 -1.30 16 22 C -0.07 -0.69 0.80 -154.51 -0.12 -0.81 16 23 C -0.14 -1.47 8.12 37.16 0.30 -1.17 16 24 C -0.14 -1.25 8.47 37.16 0.31 -0.94 16 25 C -0.14 -1.39 8.12 37.16 0.30 -1.09 16 26 C -0.05 -0.86 9.31 -39.61 -0.37 -1.22 16 27 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.52 7.66 -51.92 -0.40 0.12 16 30 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.93 8.03 -52.49 -0.42 1.51 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 36 H 0.36 7.10 7.31 -39.29 -0.29 6.81 16 37 H 0.02 0.34 7.99 -51.93 -0.42 -0.07 16 38 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.07 0.93 6.43 -51.93 -0.33 0.60 16 40 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.13 2.35 7.72 -52.49 -0.41 1.94 16 53 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 LS Contribution 415.60 15.07 6.26 6.26 Total: -1.00 -28.93 415.60 -10.06 -38.99 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -9.84 Total: 6.62 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -1.39 Total: -24.70 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.13 Total: -38.29 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -28.93 -10.06 -38.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582158976.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.501 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds