Wall clock time and date at job start Tue Mar 31 2020 12:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99665 * 2 1 4 4 C 1.38739 * 120.05455 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94476 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05301 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94351 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47210 * 20.00189 * 7 6 5 9 9 C 1.53005 * 109.47148 * 260.00174 * 7 6 5 10 10 C 1.50701 * 109.47252 * 174.46339 * 9 7 6 11 11 H 1.08005 * 119.99672 * 354.73921 * 10 9 7 12 12 C 1.37875 * 120.00249 * 174.73689 * 10 9 7 13 13 N 1.31513 * 119.99713 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00171 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46919 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47035 * 120.00188 * 14 12 10 17 17 H 1.48498 * 109.47237 * 240.00331 * 14 12 10 18 18 N 1.46895 * 109.47572 * 140.00156 * 7 6 5 19 19 C 1.46897 * 111.00067 * 273.97560 * 18 7 6 20 20 C 1.53004 * 109.47438 * 182.51115 * 19 18 7 21 21 C 1.52999 * 109.47328 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46981 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47350 * 60.00270 * 22 21 20 24 24 C 1.53011 * 109.47199 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47220 * 300.00089 * 22 21 20 26 26 C 1.38269 * 120.11450 * 0.27600 * 6 5 4 27 27 C 1.38139 * 120.05525 * 359.45090 * 26 6 5 28 28 H 1.08996 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47207 * 299.99962 * 1 2 3 30 30 H 1.08996 * 109.47661 * 59.99735 * 1 2 3 31 31 H 1.07994 * 120.02413 * 359.95741 * 4 3 2 32 32 H 1.08000 * 119.97118 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.46872 * 294.46372 * 9 7 6 34 34 H 1.08997 * 109.46720 * 54.46948 * 9 7 6 35 35 H 0.97001 * 119.99821 * 179.97438 * 13 12 10 36 36 H 1.00900 * 111.00532 * 150.01467 * 18 7 6 37 37 H 1.09000 * 109.47311 * 302.51163 * 19 18 7 38 38 H 1.08998 * 109.47425 * 62.50817 * 19 18 7 39 39 H 1.08991 * 109.47065 * 300.00293 * 20 19 18 40 40 H 1.09003 * 109.46949 * 59.99959 * 20 19 18 41 41 H 1.09003 * 109.46966 * 300.00349 * 21 20 19 42 42 H 1.09003 * 109.46823 * 60.00268 * 21 20 19 43 43 H 1.09000 * 109.46940 * 60.00218 * 23 22 21 44 44 H 1.09001 * 109.47160 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.46665 * 299.99926 * 23 22 21 46 46 H 1.09003 * 109.46875 * 59.99905 * 24 22 21 47 47 H 1.08991 * 109.47176 * 179.97438 * 24 22 21 48 48 H 1.09003 * 109.46696 * 300.00120 * 24 22 21 49 49 H 1.08996 * 109.47453 * 60.00263 * 25 22 21 50 50 H 1.09001 * 109.47399 * 180.02562 * 25 22 21 51 51 H 1.09000 * 109.47430 * 299.99836 * 25 22 21 52 52 H 1.08002 * 119.97276 * 179.70509 * 26 6 5 53 53 H 1.07994 * 120.03291 * 180.27931 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 -0.0011 6 6 3.3018 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0111 4.9038 -0.3546 9 6 3.9947 5.5877 1.4175 10 6 4.7959 6.8639 1.4423 11 1 5.3233 7.1877 0.5571 12 6 4.8556 7.6181 2.5949 13 7 4.2138 7.2235 3.6729 14 14 5.8482 9.2003 2.6255 15 1 6.4702 9.4202 1.2951 16 1 4.9526 10.3403 2.9472 17 1 6.9104 9.0985 3.6582 18 7 3.2626 5.9360 -0.8933 19 6 3.7242 5.7960 -2.2808 20 6 2.9944 6.8085 -3.1658 21 6 3.4756 6.6631 -4.6109 22 6 2.7463 7.6760 -5.4956 23 6 3.0424 9.0928 -4.9996 24 6 3.2271 7.5302 -6.9409 25 6 1.2397 7.4176 -5.4314 26 6 1.9209 3.6048 0.0042 27 6 1.2914 2.3752 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.0208 0.3801 -0.0003 32 1 5.1345 2.5752 -0.0019 33 1 2.9720 5.7947 1.7323 34 1 4.4444 4.8632 2.0963 35 1 4.2561 7.7540 4.4839 36 1 3.3499 6.8904 -0.5777 37 1 4.7975 5.9803 -2.3270 38 1 3.5134 4.7865 -2.6338 39 1 1.9211 6.6243 -3.1196 40 1 3.2052 7.8180 -2.8129 41 1 4.5490 6.8476 -4.6566 42 1 3.2651 5.6536 -4.9641 43 1 4.1157 9.2769 -5.0455 44 1 2.5224 9.8144 -5.6297 45 1 2.6995 9.1964 -3.9702 46 1 3.0159 6.5209 -7.2940 47 1 2.7072 8.2515 -7.5712 48 1 4.3006 7.7141 -6.9869 49 1 0.8968 7.5212 -4.4020 50 1 0.7201 8.1390 -6.0621 51 1 1.0287 6.4083 -5.7848 52 1 1.3340 4.5114 0.0085 53 1 0.2129 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582158976.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:40 Heat of formation + Delta-G solvation = -64.460638 kcal Electronic energy + Delta-G solvation = -27152.224889 eV Core-core repulsion = 23601.031562 eV Total energy + Delta-G solvation = -3551.193327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04472 -39.40989 -38.81642 -37.00668 -35.03532 -33.40341 -31.92024 -30.72652 -30.09730 -28.16556 -28.11277 -28.09291 -26.53546 -25.15962 -23.80208 -23.06520 -22.23179 -21.06543 -19.40864 -19.00282 -18.54805 -17.22198 -16.82070 -16.56122 -16.43244 -16.21943 -15.99504 -15.58430 -15.31930 -15.02160 -14.92676 -14.72696 -14.46251 -14.38122 -14.04719 -13.60760 -13.50290 -13.43956 -13.17763 -13.06077 -12.82474 -12.68399 -12.64019 -12.50818 -12.46163 -12.41589 -12.27104 -12.16697 -11.96726 -11.69681 -11.64690 -11.41155 -11.28371 -11.22044 -11.10659 -11.05846 -10.57948 -9.84709 -9.20793 -8.91421 -8.18337 -6.29811 0.48818 0.58716 1.39449 1.40853 1.52378 2.40252 2.44437 2.90194 3.13242 3.41252 3.88723 3.95864 3.98127 4.00828 4.04114 4.17162 4.23982 4.37659 4.42786 4.43534 4.54556 4.59442 4.64516 4.65146 4.72199 4.74955 4.76737 4.78874 4.81396 4.89495 4.93858 4.95743 4.97203 5.02683 5.11034 5.14535 5.20931 5.26599 5.30665 5.35415 5.38226 5.43824 5.46352 5.52201 5.56778 5.60815 5.63548 5.81327 5.86189 5.90134 6.19870 6.43698 6.53006 6.67994 6.85459 7.39295 8.92770 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.005671 B = 0.004887 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4936.525776 B = 5728.433822 C = 9969.901015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.108 3.892 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.109 4.109 7 C 0.146 3.854 8 H 0.030 0.970 9 C 0.039 3.961 10 C -0.532 4.532 11 H 0.058 0.942 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.959 3.041 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.282 1.282 18 N -0.679 5.679 19 C 0.066 3.934 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.068 4.068 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.142 4.142 26 C -0.059 4.059 27 C -0.210 4.210 28 H 0.122 0.878 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.002 0.998 34 H -0.013 1.013 35 H 0.263 0.737 36 H 0.346 0.654 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.122 0.878 53 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 -6.178 -17.499 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.063 3.937 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.110 4.110 7 C 0.036 3.964 8 H 0.048 0.952 9 C 0.002 3.998 10 C -0.570 4.570 11 H 0.076 0.924 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.784 3.216 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.208 1.208 18 N -0.311 5.311 19 C -0.063 4.063 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.068 4.068 23 C -0.202 4.202 24 C -0.196 4.196 25 C -0.199 4.199 26 C -0.077 4.077 27 C -0.229 4.229 28 H 0.140 0.860 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.021 0.979 34 H 0.006 0.994 35 H 0.071 0.929 36 H 0.165 0.835 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.140 0.860 53 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.113 -6.740 -17.415 19.983 hybrid contribution 1.234 1.402 0.815 2.038 sum -5.880 -5.337 -16.600 18.401 Atomic orbital electron populations 1.23306 0.76767 1.05446 1.02003 1.86007 1.23233 1.26540 1.89017 1.19087 0.92504 0.84489 0.97665 1.20483 0.91795 0.98390 1.07157 1.20984 1.00157 0.91274 0.98656 1.20026 0.94456 0.94637 1.01855 1.20218 0.92848 0.89452 0.93863 0.95180 1.19051 0.95796 0.94217 0.90734 1.21489 1.30434 1.07568 0.97469 0.92413 1.25843 0.96573 1.01287 0.95283 1.70109 1.43861 1.40288 1.02576 0.85490 0.78413 0.79311 0.78371 1.18665 1.20437 1.20830 1.60483 1.58219 1.10782 1.01585 1.21958 0.96025 0.99692 0.88638 1.21600 1.00599 0.98203 0.94340 1.21546 0.99537 0.99153 0.93629 1.20526 0.95747 0.95049 0.95485 1.21942 1.01328 0.95863 1.01078 1.21849 1.01017 1.01924 0.94782 1.21913 0.94664 1.01587 1.01761 1.20829 0.94105 0.97213 0.95590 1.21404 1.00782 0.91750 1.08957 0.85988 0.92377 0.91873 0.84055 0.85197 0.97949 0.99419 0.92851 0.83461 0.96743 0.92104 0.91180 0.92416 0.92465 0.91856 0.92993 0.92127 0.93048 0.92456 0.92081 0.92776 0.92931 0.92232 0.92601 0.85965 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.84 10.50 -92.45 -0.97 -9.81 16 3 C 0.11 3.27 6.69 22.51 0.15 3.42 16 4 C -0.16 -4.97 9.99 22.37 0.22 -4.74 16 5 C -0.09 -3.17 9.66 22.25 0.22 -2.96 16 6 C -0.11 -4.15 4.79 -19.85 -0.10 -4.24 16 7 C 0.15 6.15 2.19 44.17 0.10 6.24 16 8 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 9 C 0.04 2.06 4.53 29.85 0.14 2.20 16 10 C -0.53 -29.11 8.05 25.60 0.21 -28.91 16 11 H 0.06 3.05 7.68 -2.91 -0.02 3.02 16 12 C 0.01 0.48 5.46 84.65 0.46 0.95 16 13 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 14 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 N -0.68 -25.62 5.57 -495.46 -2.76 -28.38 16 19 C 0.07 2.07 5.51 86.31 0.48 2.55 16 20 C -0.11 -2.84 4.74 30.60 0.15 -2.69 16 21 C -0.10 -2.15 4.27 30.59 0.13 -2.02 16 22 C -0.07 -1.25 0.80 -52.18 -0.04 -1.30 16 23 C -0.14 -2.77 8.12 71.98 0.58 -2.19 16 24 C -0.14 -2.18 8.47 71.99 0.61 -1.57 16 25 C -0.14 -2.54 8.12 71.98 0.58 -1.96 16 26 C -0.06 -2.11 9.31 22.25 0.21 -1.90 16 27 C -0.21 -6.41 9.04 22.37 0.20 -6.21 16 28 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 30 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 31 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.13 4.14 8.03 -2.91 -0.02 4.12 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.35 14.25 7.31 -89.69 -0.66 13.59 16 37 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 38 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 39 H 0.07 1.83 6.43 -2.39 -0.02 1.81 16 40 H 0.06 1.57 6.43 -2.39 -0.02 1.55 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.05 1.09 6.43 -2.39 -0.02 1.07 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 1.04 6.43 -2.39 -0.02 1.02 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.12 4.51 7.72 -2.91 -0.02 4.49 16 53 H 0.15 3.55 6.30 -2.91 -0.02 3.54 16 Total: -1.00 -63.27 415.60 4.18 -59.09 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.20 Total: 32.88 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 5.40 Total: -43.88 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.48 Total: -83.90 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.97 Total: -9.81 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -63.27 4.18 -59.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582158976.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.371 kcal (2) G-P(sol) polarization free energy of solvation -63.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds