Wall clock time and date at job start Tue Mar 31 2020 12:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99898 * 2 1 4 4 O 1.21282 * 120.00451 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99906 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.46921 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46985 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47217 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47153 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00201 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99920 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46996 * 59.99576 * 13 11 9 15 15 H 1.48491 * 109.47467 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46721 * 300.00131 * 13 11 9 17 17 C 1.46499 * 120.00242 * 180.02562 * 2 1 3 18 18 C 1.53001 * 109.46827 * 239.18996 * 17 2 1 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 2 20 20 C 1.52995 * 109.47391 * 300.00118 * 19 18 17 21 21 C 1.52999 * 109.47155 * 300.00065 * 20 19 18 22 22 C 1.53006 * 109.47024 * 59.99710 * 21 20 19 23 23 C 1.52993 * 109.47363 * 59.99918 * 18 17 2 24 24 C 1.52994 * 109.47142 * 60.00355 * 22 21 20 25 25 C 1.53001 * 109.47304 * 300.00056 * 24 22 21 26 26 C 1.53001 * 109.47480 * 59.99606 * 25 24 22 27 27 H 1.08998 * 109.47366 * 275.91888 * 1 2 3 28 28 H 1.09001 * 109.47579 * 35.91944 * 1 2 3 29 29 H 1.09004 * 109.46886 * 155.92006 * 1 2 3 30 30 H 1.09003 * 109.46684 * 299.99489 * 5 3 2 31 31 H 1.08996 * 109.47010 * 60.00026 * 5 3 2 32 32 H 1.08996 * 109.46719 * 299.99567 * 6 5 3 33 33 H 1.08996 * 109.47469 * 60.00048 * 6 5 3 34 34 H 1.09001 * 109.47143 * 299.99858 * 7 6 5 35 35 H 1.08999 * 109.47533 * 59.99290 * 7 6 5 36 36 H 1.09008 * 109.47066 * 299.99576 * 8 7 6 37 37 H 1.09002 * 109.47650 * 59.99733 * 8 7 6 38 38 H 0.96998 * 120.00564 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46990 * 119.19115 * 17 2 1 40 40 H 1.09000 * 109.47315 * 299.99533 * 18 17 2 41 41 H 1.09006 * 109.46878 * 59.99898 * 19 18 17 42 42 H 1.08999 * 109.47130 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.47603 * 179.97438 * 20 19 18 44 44 H 1.08994 * 109.46993 * 299.99946 * 21 20 19 45 45 H 1.09000 * 109.47450 * 179.97438 * 21 20 19 46 46 H 1.09006 * 109.46878 * 180.02562 * 22 21 20 47 47 H 1.08999 * 109.47102 * 300.00159 * 23 18 17 48 48 H 1.09000 * 109.47315 * 179.97438 * 23 18 17 49 49 H 1.08999 * 109.47416 * 179.97438 * 24 22 21 50 50 H 1.09004 * 109.47540 * 59.99647 * 24 22 21 51 51 H 1.09000 * 109.47469 * 180.02562 * 25 24 22 52 52 H 1.09000 * 109.46547 * 60.00314 * 26 25 24 53 53 H 1.08990 * 109.47600 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6145 4.9603 -0.0002 8 6 2.6087 6.1232 -0.0004 9 6 1.8551 7.4283 0.0002 10 1 0.7751 7.4283 0.0002 11 6 2.5445 8.6224 0.0008 12 7 3.8596 8.6224 0.0013 13 14 1.6105 10.2402 0.0008 14 1 0.7562 10.3185 1.2129 15 1 2.5754 11.3689 0.0008 16 1 0.7572 10.3190 -1.2121 17 6 2.1975 -1.2687 -0.0006 18 6 3.0923 -1.3414 1.2383 19 6 3.8570 -2.6667 1.2381 20 6 2.8626 -3.8292 1.2583 21 6 1.9983 -3.7393 2.5176 22 6 1.2337 -2.4140 2.5178 23 6 2.2281 -1.2520 2.4977 24 6 0.3389 -2.3413 1.2790 25 6 1.2030 -2.4313 0.0196 26 6 1.9677 -3.7565 0.0193 27 1 -0.3634 0.1060 1.0222 28 1 -0.3634 0.8322 -0.6029 29 1 -0.3633 -0.9383 -0.4193 30 1 0.7583 2.5302 -0.8892 31 1 0.7590 2.5298 0.8908 32 1 3.0068 3.5775 0.8893 33 1 3.0055 3.5776 -0.8906 34 1 0.9875 5.0178 -0.8900 35 1 0.9881 5.0183 0.8899 36 1 3.2354 6.0656 0.8897 37 1 3.2354 6.0655 -0.8903 38 1 4.3446 9.4624 0.0013 39 1 2.8132 -1.3323 -0.8977 40 1 3.8006 -0.5130 1.2242 41 1 4.4726 -2.7308 0.3408 42 1 4.4948 -2.7183 2.1205 43 1 3.4072 -4.7734 1.2576 44 1 2.6358 -3.7912 3.4001 45 1 1.2895 -4.5673 2.5318 46 1 0.6183 -2.3498 3.4153 47 1 1.6831 -0.3081 2.4980 48 1 2.8656 -1.3043 3.3803 49 1 -0.2062 -1.3974 1.2794 50 1 -0.3696 -3.1695 1.2933 51 1 0.5656 -2.3790 -0.8630 52 1 1.2592 -4.5847 0.0337 53 1 2.5836 -3.8204 -0.8776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588864855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:24 Heat of formation + Delta-G solvation = -64.329959 kcal Electronic energy + Delta-G solvation = -28325.765388 eV Core-core repulsion = 24774.577728 eV Total energy + Delta-G solvation = -3551.187660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13124 -39.32678 -35.83093 -34.87354 -33.05087 -32.90163 -32.64910 -31.68189 -29.52009 -27.79355 -26.31612 -25.73643 -24.74592 -22.50283 -21.77892 -21.58314 -21.30451 -19.95821 -18.98451 -18.04420 -16.65428 -16.15898 -16.07543 -15.77692 -15.47871 -14.91709 -14.76058 -14.43772 -14.12295 -13.95689 -13.77784 -13.64908 -13.35456 -13.16554 -13.04798 -12.66864 -12.59506 -12.52480 -12.12653 -12.00088 -11.70542 -11.57368 -11.44023 -11.26491 -11.15969 -11.10165 -10.95159 -10.86525 -10.51428 -10.47378 -10.35974 -10.12276 -10.06529 -9.89429 -9.57228 -9.42280 -9.14618 -8.94652 -8.61417 -8.27893 -5.92738 -3.95273 2.78556 2.94147 3.36775 3.41065 3.43333 4.14835 4.21329 4.30215 4.50697 4.65957 4.78215 4.79472 4.89483 4.92774 4.97116 5.00291 5.03024 5.07070 5.12968 5.17513 5.21529 5.36320 5.40764 5.41925 5.42813 5.45292 5.46646 5.55106 5.56084 5.70323 5.73986 5.78664 5.80007 5.82657 5.89239 5.91922 5.93711 6.12697 6.18426 6.21642 6.23791 6.31186 6.35445 6.56089 6.62229 6.88411 7.05950 7.23344 7.39946 7.76630 7.93402 8.08908 8.32081 8.50633 9.12300 9.68115 11.18586 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.002272 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.517487 B =12323.286363 C =12551.742207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.617 5.617 3 C 0.513 3.487 4 O -0.531 6.531 5 C -0.137 4.137 6 C -0.103 4.103 7 C -0.110 4.110 8 C 0.020 3.980 9 C -0.520 4.520 10 H 0.053 0.947 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.165 3.835 18 C -0.104 4.104 19 C -0.105 4.105 20 C -0.088 4.088 21 C -0.107 4.107 22 C -0.085 4.085 23 C -0.103 4.103 24 C -0.135 4.135 25 C -0.092 4.092 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.061 0.939 51 H 0.075 0.925 52 H 0.065 0.935 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -30.295 2.578 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.351 5.351 3 C 0.303 3.697 4 O -0.407 6.407 5 C -0.177 4.177 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.062 3.938 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.106 4.106 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.140 4.140 24 C -0.171 4.171 25 C -0.110 4.110 26 C -0.141 4.141 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.084 0.916 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.246 -30.166 2.570 31.130 hybrid contribution -0.552 0.895 0.006 1.052 sum -7.798 -29.270 2.576 30.401 Atomic orbital electron populations 1.22134 0.80370 1.03352 1.01499 1.47980 1.06563 1.05746 1.74823 1.21023 0.88229 0.85265 0.75224 1.90659 1.14128 1.87268 1.48693 1.21820 1.00040 0.92208 1.03606 1.21446 0.97031 0.92735 1.02858 1.21641 0.99049 0.94063 0.99969 1.19089 0.94055 0.91254 0.97277 1.21251 0.92927 0.91228 1.50459 0.92833 1.25042 0.94838 0.99203 0.95488 1.69962 1.06047 1.26603 1.50890 0.86673 0.79577 0.83283 0.78536 1.20290 1.21329 1.20296 1.20896 0.92584 0.82190 0.98170 1.21467 0.97770 0.98804 0.94227 1.21503 0.97109 0.93685 1.01983 1.21083 0.96184 0.98449 0.94922 1.21533 0.98381 0.97042 0.97447 1.21022 0.96442 0.95100 0.97745 1.21443 0.97362 0.97885 0.97354 1.22198 0.97624 1.03440 0.93887 1.21311 0.96665 0.94471 0.98568 1.21481 0.98381 0.96271 0.97987 0.92130 0.91250 0.90090 0.89345 0.89397 0.91889 0.91887 0.93558 0.93558 0.96621 0.96625 0.92997 0.91166 0.88721 0.91928 0.91759 0.91310 0.92129 0.92256 0.91498 0.92089 0.92237 0.89438 0.92077 0.90688 0.91623 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.00 59.84 0.48 0.99 16 2 N -0.62 -6.66 2.25 -173.93 -0.39 -7.05 16 3 C 0.51 7.38 7.38 -10.98 -0.08 7.30 16 4 O -0.53 -9.67 14.03 5.56 0.08 -9.59 16 5 C -0.14 -1.90 4.33 -27.88 -0.12 -2.02 16 6 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 7 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 8 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 9 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 13 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 C 0.16 1.69 2.22 -67.93 -0.15 1.54 16 18 C -0.10 -1.12 2.50 -90.62 -0.23 -1.35 16 19 C -0.10 -0.94 5.19 -26.73 -0.14 -1.08 16 20 C -0.09 -0.64 3.19 -90.62 -0.29 -0.93 16 21 C -0.11 -0.75 5.19 -26.73 -0.14 -0.89 16 22 C -0.08 -0.66 3.19 -90.64 -0.29 -0.95 16 23 C -0.10 -1.02 5.03 -26.76 -0.13 -1.15 16 24 C -0.13 -0.92 4.53 -26.73 -0.12 -1.04 16 25 C -0.09 -0.68 2.18 -90.62 -0.20 -0.88 16 26 C -0.10 -0.70 5.19 -26.73 -0.14 -0.84 16 27 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 28 H 0.07 0.48 6.69 -51.93 -0.35 0.14 16 29 H 0.08 0.47 4.95 -51.93 -0.26 0.22 16 30 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16 31 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.36 6.11 -51.93 -0.32 1.04 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.58 3.66 -51.93 -0.19 0.39 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.51 6.89 -51.93 -0.36 0.15 16 52 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 53 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -32.97 380.27 -10.97 -43.94 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -9.74 Total: -3.73 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.36 Total: -19.28 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.35 Total: -34.12 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.97 -10.97 -43.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588864855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.394 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds