Wall clock time and date at job start Tue Mar 31 2020 12:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99898 * 2 1 4 4 O 1.21282 * 120.00451 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99906 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.46921 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46985 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47217 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47153 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00201 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99920 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00187 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46996 * 59.99576 * 13 11 9 15 15 H 1.48491 * 109.47467 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46721 * 300.00131 * 13 11 9 17 17 C 1.46499 * 120.00242 * 180.02562 * 2 1 3 18 18 C 1.53001 * 109.46827 * 239.18996 * 17 2 1 19 19 C 1.53006 * 109.46867 * 179.97438 * 18 17 2 20 20 C 1.52995 * 109.47391 * 300.00118 * 19 18 17 21 21 C 1.52999 * 109.47155 * 300.00065 * 20 19 18 22 22 C 1.53006 * 109.47024 * 59.99710 * 21 20 19 23 23 C 1.52993 * 109.47363 * 59.99918 * 18 17 2 24 24 C 1.52994 * 109.47142 * 60.00355 * 22 21 20 25 25 C 1.53001 * 109.47304 * 300.00056 * 24 22 21 26 26 C 1.53001 * 109.47480 * 59.99606 * 25 24 22 27 27 H 1.08998 * 109.47366 * 275.91888 * 1 2 3 28 28 H 1.09001 * 109.47579 * 35.91944 * 1 2 3 29 29 H 1.09004 * 109.46886 * 155.92006 * 1 2 3 30 30 H 1.09003 * 109.46684 * 299.99489 * 5 3 2 31 31 H 1.08996 * 109.47010 * 60.00026 * 5 3 2 32 32 H 1.08996 * 109.46719 * 299.99567 * 6 5 3 33 33 H 1.08996 * 109.47469 * 60.00048 * 6 5 3 34 34 H 1.09001 * 109.47143 * 299.99858 * 7 6 5 35 35 H 1.08999 * 109.47533 * 59.99290 * 7 6 5 36 36 H 1.09008 * 109.47066 * 299.99576 * 8 7 6 37 37 H 1.09002 * 109.47650 * 59.99733 * 8 7 6 38 38 H 0.96998 * 120.00564 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.46990 * 119.19115 * 17 2 1 40 40 H 1.09000 * 109.47315 * 299.99533 * 18 17 2 41 41 H 1.09006 * 109.46878 * 59.99898 * 19 18 17 42 42 H 1.08999 * 109.47130 * 179.97438 * 19 18 17 43 43 H 1.09000 * 109.47603 * 179.97438 * 20 19 18 44 44 H 1.08994 * 109.46993 * 299.99946 * 21 20 19 45 45 H 1.09000 * 109.47450 * 179.97438 * 21 20 19 46 46 H 1.09006 * 109.46878 * 180.02562 * 22 21 20 47 47 H 1.08999 * 109.47102 * 300.00159 * 23 18 17 48 48 H 1.09000 * 109.47315 * 179.97438 * 23 18 17 49 49 H 1.08999 * 109.47416 * 179.97438 * 24 22 21 50 50 H 1.09004 * 109.47540 * 59.99647 * 24 22 21 51 51 H 1.09000 * 109.47469 * 180.02562 * 25 24 22 52 52 H 1.09000 * 109.46547 * 60.00314 * 26 25 24 53 53 H 1.08990 * 109.47600 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6145 4.9603 -0.0002 8 6 2.6087 6.1232 -0.0004 9 6 1.8551 7.4283 0.0002 10 1 0.7751 7.4283 0.0002 11 6 2.5445 8.6224 0.0008 12 7 3.8596 8.6224 0.0013 13 14 1.6105 10.2402 0.0008 14 1 0.7562 10.3185 1.2129 15 1 2.5754 11.3689 0.0008 16 1 0.7572 10.3190 -1.2121 17 6 2.1975 -1.2687 -0.0006 18 6 3.0923 -1.3414 1.2383 19 6 3.8570 -2.6667 1.2381 20 6 2.8626 -3.8292 1.2583 21 6 1.9983 -3.7393 2.5176 22 6 1.2337 -2.4140 2.5178 23 6 2.2281 -1.2520 2.4977 24 6 0.3389 -2.3413 1.2790 25 6 1.2030 -2.4313 0.0196 26 6 1.9677 -3.7565 0.0193 27 1 -0.3634 0.1060 1.0222 28 1 -0.3634 0.8322 -0.6029 29 1 -0.3633 -0.9383 -0.4193 30 1 0.7583 2.5302 -0.8892 31 1 0.7590 2.5298 0.8908 32 1 3.0068 3.5775 0.8893 33 1 3.0055 3.5776 -0.8906 34 1 0.9875 5.0178 -0.8900 35 1 0.9881 5.0183 0.8899 36 1 3.2354 6.0656 0.8897 37 1 3.2354 6.0655 -0.8903 38 1 4.3446 9.4624 0.0013 39 1 2.8132 -1.3323 -0.8977 40 1 3.8006 -0.5130 1.2242 41 1 4.4726 -2.7308 0.3408 42 1 4.4948 -2.7183 2.1205 43 1 3.4072 -4.7734 1.2576 44 1 2.6358 -3.7912 3.4001 45 1 1.2895 -4.5673 2.5318 46 1 0.6183 -2.3498 3.4153 47 1 1.6831 -0.3081 2.4980 48 1 2.8656 -1.3043 3.3803 49 1 -0.2062 -1.3974 1.2794 50 1 -0.3696 -3.1695 1.2933 51 1 0.5656 -2.3790 -0.8630 52 1 1.2592 -4.5847 0.0337 53 1 2.5836 -3.8204 -0.8776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588864855.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:23 Heat of formation + Delta-G solvation = -81.349771 kcal Electronic energy + Delta-G solvation = -28326.503423 eV Core-core repulsion = 24774.577728 eV Total energy + Delta-G solvation = -3551.925695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.85990 -40.37895 -36.84615 -36.53083 -34.65328 -33.72639 -33.53970 -32.65111 -31.14828 -28.48797 -27.72727 -26.64485 -25.82470 -24.05381 -22.56567 -22.28092 -22.15659 -21.67237 -20.01378 -18.76098 -18.41787 -17.63473 -17.15307 -16.74185 -16.45006 -16.16414 -16.07926 -15.42604 -15.08621 -14.91762 -14.53679 -14.49506 -14.39768 -14.15071 -14.07972 -13.79616 -13.60670 -13.57914 -13.35557 -13.23032 -13.19841 -12.79243 -12.67026 -12.38722 -12.22362 -12.15992 -12.09917 -11.95836 -11.79276 -11.74441 -11.51170 -11.38637 -11.35017 -11.17619 -10.91619 -10.69172 -10.55144 -10.54216 -10.23380 -9.51688 -8.18969 -6.31600 1.39776 1.44210 1.52059 1.67686 2.04551 2.41739 3.13461 3.44036 3.56817 3.66057 3.77935 4.02139 4.06938 4.10393 4.14299 4.23801 4.26123 4.30193 4.34652 4.38444 4.40411 4.49430 4.53104 4.59632 4.64335 4.71414 4.78311 4.79312 4.81677 4.83503 4.86340 4.89703 4.98672 5.07614 5.14031 5.14631 5.16583 5.17676 5.20313 5.22416 5.28806 5.31536 5.35718 5.44413 5.54826 5.55873 5.59036 5.59707 5.76568 5.77566 5.86859 6.24381 6.44466 6.86601 7.25556 7.38035 8.93234 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.031400 B = 0.002272 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.517487 B =12323.286363 C =12551.742207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.606 5.606 3 C 0.506 3.494 4 O -0.584 6.584 5 C -0.126 4.126 6 C -0.094 4.094 7 C -0.094 4.094 8 C 0.019 3.981 9 C -0.542 4.542 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.939 5.939 13 Si 0.971 3.029 14 H -0.264 1.264 15 H -0.285 1.285 16 H -0.264 1.264 17 C 0.162 3.838 18 C -0.104 4.104 19 C -0.104 4.104 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.085 4.085 26 C -0.102 4.102 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.060 0.940 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.046 0.954 48 H 0.049 0.951 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.088 0.912 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 -31.960 2.580 34.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.338 5.338 3 C 0.296 3.704 4 O -0.464 6.464 5 C -0.165 4.165 6 C -0.132 4.132 7 C -0.131 4.131 8 C -0.018 4.018 9 C -0.580 4.580 10 H 0.085 0.915 11 C -0.205 4.205 12 N -0.579 5.579 13 Si 0.795 3.205 14 H -0.188 1.188 15 H -0.211 1.211 16 H -0.188 1.188 17 C 0.059 3.941 18 C -0.123 4.123 19 C -0.142 4.142 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.101 4.101 23 C -0.138 4.138 24 C -0.169 4.169 25 C -0.103 4.103 26 C -0.140 4.140 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.102 0.898 51 H 0.110 0.890 52 H 0.106 0.894 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.438 -31.871 2.572 33.959 hybrid contribution 0.838 1.405 0.015 1.636 sum -10.601 -30.465 2.588 32.360 Atomic orbital electron populations 1.22491 0.77677 1.05242 1.02947 1.47995 1.08205 1.04825 1.72801 1.21154 0.87649 0.86538 0.75063 1.90653 1.16364 1.88049 1.51373 1.21690 0.98881 0.89838 1.06082 1.21228 0.97461 0.93796 1.00724 1.21433 0.97774 0.92642 1.01276 1.19048 0.94667 0.93867 0.94187 1.21722 0.93754 0.92161 1.50372 0.91493 1.26120 0.95792 1.03828 0.94742 1.70130 1.08135 1.27847 1.51820 0.85417 0.78157 0.77564 0.79400 1.18835 1.21077 1.18824 1.20949 0.93325 0.83217 0.96623 1.21369 0.97466 0.98078 0.95437 1.21493 0.97537 0.93901 1.01320 1.21085 0.95919 0.97624 0.95710 1.21532 0.98528 0.97185 0.96927 1.21029 0.96020 0.94133 0.98898 1.21405 0.97582 0.98567 0.96239 1.22223 0.97463 1.04706 0.92512 1.21326 0.96098 0.93096 0.99829 1.21508 0.98595 0.96518 0.97382 0.90661 0.90147 0.87723 0.86616 0.86898 0.94227 0.94094 0.92019 0.92114 0.99880 0.99834 0.92839 0.93508 0.93382 0.92829 0.92293 0.90165 0.92591 0.90303 0.90617 0.93552 0.93241 0.88966 0.89780 0.89031 0.89368 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 8.00 127.77 1.02 1.69 16 2 N -0.61 -12.61 2.25 -822.58 -1.85 -14.46 16 3 C 0.51 14.89 7.38 87.66 0.65 15.54 16 4 O -0.58 -23.02 14.03 -3.04 -0.04 -23.07 16 5 C -0.13 -3.35 4.33 29.85 0.13 -3.22 16 6 C -0.09 -3.58 4.50 30.59 0.14 -3.44 16 7 C -0.09 -3.95 5.15 30.59 0.16 -3.79 16 8 C 0.02 1.09 4.97 29.85 0.15 1.24 16 9 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 10 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 11 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 12 N -0.94 -60.01 13.29 21.45 0.28 -59.72 16 13 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 C 0.16 3.30 2.22 44.99 0.10 3.40 16 18 C -0.10 -2.41 2.50 -10.79 -0.03 -2.43 16 19 C -0.10 -1.97 5.19 30.59 0.16 -1.81 16 20 C -0.09 -1.09 3.19 -10.79 -0.03 -1.12 16 21 C -0.10 -1.21 5.19 30.60 0.16 -1.05 16 22 C -0.08 -1.08 3.19 -10.81 -0.03 -1.12 16 23 C -0.10 -2.00 5.03 30.58 0.15 -1.85 16 24 C -0.13 -1.31 4.53 30.59 0.14 -1.17 16 25 C -0.08 -1.03 2.18 -10.79 -0.02 -1.05 16 26 C -0.10 -1.11 5.19 30.60 0.16 -0.95 16 27 H 0.08 0.72 6.70 -2.39 -0.02 0.71 16 28 H 0.08 0.81 6.69 -2.39 -0.02 0.79 16 29 H 0.10 0.76 4.95 -2.38 -0.01 0.75 16 30 H 0.12 2.49 7.42 -2.39 -0.02 2.47 16 31 H 0.11 2.48 8.11 -2.39 -0.02 2.46 16 32 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.56 6.11 -2.39 -0.01 1.54 16 41 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.05 1.04 7.60 -2.39 -0.02 1.02 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.09 0.85 3.66 -2.39 -0.01 0.84 16 50 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.09 0.86 6.89 -2.39 -0.02 0.85 16 52 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -76.76 380.27 4.96 -71.80 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.86 Total: 11.01 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.69 Total: -32.83 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.57 Total: -74.18 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.76 4.96 -71.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588864855.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.549 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds