Wall clock time and date at job start Tue Mar 31 2020 12:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 C 1.52999 * 109.47095 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.35896 * 117.00441 * 179.97438 * 5 4 3 7 7 C 1.38759 * 120.05286 * 0.24917 * 6 5 4 8 8 C 1.38118 * 119.94512 * 180.31943 * 7 6 5 9 9 C 1.38296 * 120.05619 * 359.68306 * 8 7 6 10 10 C 1.38243 * 120.10905 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05451 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02671 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47109 * 260.00473 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47191 * 300.00419 * 15 14 13 17 17 C 1.52999 * 109.46983 * 59.99979 * 15 14 13 18 18 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47182 * 180.02562 * 18 15 14 20 20 H 1.07997 * 120.00285 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00214 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00442 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46917 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46978 * 119.99759 * 23 21 19 26 26 H 1.48496 * 109.47253 * 239.99876 * 23 21 19 27 27 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46831 * 300.00376 * 1 2 3 29 29 H 1.08999 * 109.47189 * 59.99600 * 1 2 3 30 30 H 1.08998 * 109.46850 * 240.00150 * 2 1 3 31 31 H 1.08999 * 109.46979 * 119.99645 * 2 1 3 32 32 H 1.08992 * 109.47685 * 59.99967 * 3 2 1 33 33 H 1.09010 * 109.46905 * 300.00177 * 3 2 1 34 34 H 1.08998 * 109.47306 * 59.99938 * 4 3 2 35 35 H 1.08999 * 109.46632 * 299.99366 * 4 3 2 36 36 H 1.08005 * 120.03045 * 0.02990 * 7 6 5 37 37 H 1.08001 * 119.97673 * 179.70488 * 8 7 6 38 38 H 1.08000 * 119.94496 * 180.02562 * 9 8 7 39 39 H 1.07995 * 119.97355 * 180.02562 * 10 9 8 40 40 H 1.08992 * 109.46894 * 140.00209 * 12 11 10 41 41 H 1.09004 * 109.47113 * 20.00359 * 12 11 10 42 42 H 1.00899 * 110.99484 * 303.95639 * 13 12 11 43 43 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 44 44 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 45 45 H 1.09003 * 109.47221 * 59.99243 * 16 15 14 46 46 H 1.08997 * 109.47170 * 180.02562 * 16 15 14 47 47 H 1.09005 * 109.46721 * 299.99839 * 16 15 14 48 48 H 1.09001 * 109.47612 * 60.00211 * 17 15 14 49 49 H 1.08997 * 109.47506 * 180.02562 * 17 15 14 50 50 H 1.09004 * 109.47572 * 300.00136 * 17 15 14 51 51 H 1.08999 * 109.46979 * 300.00363 * 18 15 14 52 52 H 1.08996 * 109.46919 * 59.99709 * 18 15 14 53 53 H 0.97000 * 120.00251 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3937 2.9678 -0.0013 7 6 6.2400 1.8682 -0.0061 8 6 7.6089 2.0518 0.0005 9 6 8.1363 3.3302 0.0052 10 6 7.2953 4.4274 0.0039 11 6 5.9251 4.2490 -0.0017 12 6 5.0089 5.4455 -0.0026 13 7 4.5152 5.6852 1.3601 14 6 3.6173 6.8472 1.3979 15 6 3.1242 7.0644 2.8299 16 6 2.3692 5.8208 3.3035 17 6 4.3214 7.3149 3.7490 18 6 2.1885 8.2743 2.8692 19 6 1.7034 8.4885 4.2797 20 1 2.0295 7.8276 5.0692 21 6 0.8425 9.5277 4.5623 22 7 0.4450 10.3323 3.6009 23 14 0.2405 9.7929 6.3107 24 1 0.8306 8.7598 7.1994 25 1 0.6535 11.1409 6.7772 26 1 -1.2404 9.6893 6.3454 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 5.8287 0.8696 -0.0102 37 1 8.2681 1.1963 0.0017 38 1 9.2070 3.4717 0.0100 39 1 7.7095 5.4247 0.0071 40 1 4.1655 5.2567 -0.6666 41 1 5.5560 6.3219 -0.3502 42 1 4.0600 4.8639 1.7294 43 1 4.1551 7.7331 1.0602 44 1 2.7641 6.6686 0.7434 45 1 3.0354 4.9585 3.2754 46 1 2.0175 5.9757 4.3235 47 1 1.5162 5.6423 2.6486 48 1 4.8594 8.2008 3.4118 49 1 3.9703 7.4692 4.7693 50 1 4.9878 6.4527 3.7210 51 1 2.7261 9.1604 2.5317 52 1 1.3357 8.0954 2.2145 53 1 -0.1605 11.0636 3.7998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588929570.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:06 Heat of formation + Delta-G solvation = -49.419137 kcal Electronic energy + Delta-G solvation = -27196.987543 eV Core-core repulsion = 23646.446464 eV Total energy + Delta-G solvation = -3550.541079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40732 -37.91109 -37.38789 -35.35047 -34.51393 -32.33613 -30.92975 -30.44785 -29.13016 -27.00287 -26.25548 -25.96692 -24.49497 -24.12447 -22.16235 -22.04300 -21.56830 -20.88154 -18.19280 -17.75438 -16.60914 -16.27630 -16.17376 -15.88529 -15.12113 -14.91418 -14.65476 -14.60078 -14.18920 -14.07751 -13.76892 -13.55497 -13.12659 -12.99553 -12.81633 -12.51606 -12.41463 -12.06473 -11.98398 -11.92187 -11.78444 -11.52511 -11.41976 -11.33750 -11.20427 -10.94114 -10.80545 -10.78464 -10.76349 -10.70762 -10.42803 -10.19293 -10.04282 -9.60978 -9.06474 -8.89708 -8.75263 -8.27519 -8.26811 -7.90236 -5.91930 -3.91578 1.22744 1.35484 2.99889 3.35172 3.42876 3.46729 3.64917 4.51156 4.51979 4.54235 4.61787 4.73399 4.74639 4.83798 4.91012 4.95692 5.01993 5.19155 5.24823 5.27645 5.42846 5.43955 5.47167 5.51981 5.61294 5.62196 5.73397 5.81242 5.84040 5.88689 5.89327 5.99172 6.00088 6.07618 6.21040 6.34609 6.36230 6.43172 6.49628 6.60742 6.70952 6.75100 6.87611 6.90385 7.27921 7.28415 7.33647 7.34236 7.51345 7.75987 7.83060 7.93116 8.09132 8.54128 9.14185 9.70951 11.19842 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.003087 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.121593 B = 9067.749969 C =11090.384886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.122 4.122 4 C 0.061 3.939 5 O -0.311 6.311 6 C 0.135 3.865 7 C -0.212 4.212 8 C -0.086 4.086 9 C -0.160 4.160 10 C -0.064 4.064 11 C -0.105 4.105 12 C 0.105 3.895 13 N -0.679 5.679 14 C 0.070 3.930 15 C -0.058 4.058 16 C -0.127 4.127 17 C -0.115 4.115 18 C 0.034 3.966 19 C -0.504 4.504 20 H 0.059 0.941 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.341 0.659 43 H 0.065 0.935 44 H 0.022 0.978 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.039 0.961 49 H 0.053 0.947 50 H 0.042 0.958 51 H 0.015 0.985 52 H 0.012 0.988 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -21.278 -10.539 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.159 4.159 4 C -0.014 4.014 5 O -0.225 6.225 6 C 0.089 3.911 7 C -0.230 4.230 8 C -0.104 4.104 9 C -0.178 4.178 10 C -0.083 4.083 11 C -0.106 4.106 12 C -0.024 4.024 13 N -0.312 5.312 14 C -0.058 4.058 15 C -0.058 4.058 16 C -0.185 4.185 17 C -0.173 4.173 18 C -0.004 4.004 19 C -0.543 4.543 20 H 0.077 0.923 21 C -0.147 4.147 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.055 0.945 41 H 0.094 0.906 42 H 0.161 0.839 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.033 0.967 52 H 0.031 0.969 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.295 -20.620 -10.383 25.278 hybrid contribution -1.098 -0.359 0.475 1.249 sum 9.196 -20.978 -9.907 24.957 Atomic orbital electron populations 1.21757 0.95083 1.01790 1.02402 1.21416 0.96566 0.95569 1.02161 1.21598 0.92391 0.97765 1.04188 1.22824 0.95525 0.81949 1.01124 1.86084 1.18919 1.29039 1.88424 1.18866 0.82308 0.93643 0.96275 1.21175 0.94453 0.97769 1.09631 1.20885 0.94226 0.97267 0.98036 1.21036 0.99774 0.92479 1.04508 1.20918 0.91646 0.99238 0.96496 1.19277 0.94332 0.92017 1.04967 1.20684 0.96082 0.94312 0.91359 1.60669 1.42764 1.08500 1.19218 1.22105 0.93233 0.92426 0.98068 1.20616 0.96037 0.97361 0.91779 1.21753 0.98451 0.96116 1.02155 1.21590 0.96560 0.99556 0.99555 1.19123 0.93185 0.91066 0.96999 1.21289 1.26430 1.12280 0.94261 0.92255 1.25017 0.96672 0.96270 0.96696 1.69980 1.34583 1.17587 1.31664 0.86619 0.78458 0.77979 0.85451 1.19780 1.21182 1.21229 0.92558 0.92276 0.92507 0.91903 0.91719 0.90390 0.90792 0.92332 0.92078 0.85819 0.86151 0.86051 0.85253 0.94469 0.90621 0.83947 0.91666 0.95938 0.94880 0.91846 0.94162 0.94205 0.92799 0.93922 0.96697 0.96942 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -1.05 5.58 -26.73 -0.15 -1.20 16 4 C 0.06 0.56 4.74 37.16 0.18 0.73 16 5 O -0.31 -3.86 9.30 -19.41 -0.18 -4.04 16 6 C 0.13 1.68 6.65 -39.22 -0.26 1.42 16 7 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 8 C -0.09 -0.83 10.04 -39.60 -0.40 -1.23 16 9 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 10 C -0.06 -0.74 9.67 -39.60 -0.38 -1.12 16 11 C -0.10 -1.36 5.41 -104.47 -0.56 -1.93 16 12 C 0.10 1.47 5.47 -4.97 -0.03 1.44 16 13 N -0.68 -10.89 5.70 -115.06 -0.66 -11.54 16 14 C 0.07 1.29 4.65 -3.82 -0.02 1.27 16 15 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16 16 C -0.13 -2.49 7.89 37.16 0.29 -2.20 16 17 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 18 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 19 C -0.50 -14.04 7.65 -34.44 -0.26 -14.30 16 20 H 0.06 1.62 5.68 -52.49 -0.30 1.32 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 23 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 35 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 36 H 0.12 1.05 6.30 -52.48 -0.33 0.72 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 40 H 0.04 0.54 7.86 -51.93 -0.41 0.14 16 41 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 42 H 0.34 5.57 6.68 -39.29 -0.26 5.31 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 46 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 50 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 51 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 53 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 415.55 15.07 6.26 6.26 Total: -1.00 -30.55 415.55 -10.83 -41.38 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.83 Total: 2.01 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.14 Total: -24.47 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.08 Total: -38.01 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.18 Total: -4.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.55 -10.83 -41.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588929570.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.035 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds