Wall clock time and date at job start Tue Mar 31 2020 12:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 C 1.52999 * 109.47095 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47196 * 179.97438 * 4 3 2 6 6 C 1.35896 * 117.00441 * 179.97438 * 5 4 3 7 7 C 1.38759 * 120.05286 * 0.24917 * 6 5 4 8 8 C 1.38118 * 119.94512 * 180.31943 * 7 6 5 9 9 C 1.38296 * 120.05619 * 359.68306 * 8 7 6 10 10 C 1.38243 * 120.10905 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05451 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02671 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47109 * 260.00473 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47191 * 300.00419 * 15 14 13 17 17 C 1.52999 * 109.46983 * 59.99979 * 15 14 13 18 18 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 19 19 C 1.50694 * 109.47182 * 180.02562 * 18 15 14 20 20 H 1.07997 * 120.00285 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00214 * 180.02562 * 19 18 15 22 22 N 1.31515 * 119.99912 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00442 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46917 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46978 * 119.99759 * 23 21 19 26 26 H 1.48496 * 109.47253 * 239.99876 * 23 21 19 27 27 H 1.09001 * 109.47215 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46831 * 300.00376 * 1 2 3 29 29 H 1.08999 * 109.47189 * 59.99600 * 1 2 3 30 30 H 1.08998 * 109.46850 * 240.00150 * 2 1 3 31 31 H 1.08999 * 109.46979 * 119.99645 * 2 1 3 32 32 H 1.08992 * 109.47685 * 59.99967 * 3 2 1 33 33 H 1.09010 * 109.46905 * 300.00177 * 3 2 1 34 34 H 1.08998 * 109.47306 * 59.99938 * 4 3 2 35 35 H 1.08999 * 109.46632 * 299.99366 * 4 3 2 36 36 H 1.08005 * 120.03045 * 0.02990 * 7 6 5 37 37 H 1.08001 * 119.97673 * 179.70488 * 8 7 6 38 38 H 1.08000 * 119.94496 * 180.02562 * 9 8 7 39 39 H 1.07995 * 119.97355 * 180.02562 * 10 9 8 40 40 H 1.08992 * 109.46894 * 140.00209 * 12 11 10 41 41 H 1.09004 * 109.47113 * 20.00359 * 12 11 10 42 42 H 1.00899 * 110.99484 * 303.95639 * 13 12 11 43 43 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 44 44 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 45 45 H 1.09003 * 109.47221 * 59.99243 * 16 15 14 46 46 H 1.08997 * 109.47170 * 180.02562 * 16 15 14 47 47 H 1.09005 * 109.46721 * 299.99839 * 16 15 14 48 48 H 1.09001 * 109.47612 * 60.00211 * 17 15 14 49 49 H 1.08997 * 109.47506 * 180.02562 * 17 15 14 50 50 H 1.09004 * 109.47572 * 300.00136 * 17 15 14 51 51 H 1.08999 * 109.46979 * 300.00363 * 18 15 14 52 52 H 1.08996 * 109.46919 * 59.99709 * 18 15 14 53 53 H 0.97000 * 120.00251 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3937 2.9678 -0.0013 7 6 6.2400 1.8682 -0.0061 8 6 7.6089 2.0518 0.0005 9 6 8.1363 3.3302 0.0052 10 6 7.2953 4.4274 0.0039 11 6 5.9251 4.2490 -0.0017 12 6 5.0089 5.4455 -0.0026 13 7 4.5152 5.6852 1.3601 14 6 3.6173 6.8472 1.3979 15 6 3.1242 7.0644 2.8299 16 6 2.3692 5.8208 3.3035 17 6 4.3214 7.3149 3.7490 18 6 2.1885 8.2743 2.8692 19 6 1.7034 8.4885 4.2797 20 1 2.0295 7.8276 5.0692 21 6 0.8425 9.5277 4.5623 22 7 0.4450 10.3323 3.6009 23 14 0.2405 9.7929 6.3107 24 1 0.8306 8.7598 7.1994 25 1 0.6535 11.1409 6.7772 26 1 -1.2404 9.6893 6.3454 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 5.8287 0.8696 -0.0102 37 1 8.2681 1.1963 0.0017 38 1 9.2070 3.4717 0.0100 39 1 7.7095 5.4247 0.0071 40 1 4.1655 5.2567 -0.6666 41 1 5.5560 6.3219 -0.3502 42 1 4.0600 4.8639 1.7294 43 1 4.1551 7.7331 1.0602 44 1 2.7641 6.6686 0.7434 45 1 3.0354 4.9585 3.2754 46 1 2.0175 5.9757 4.3235 47 1 1.5162 5.6423 2.6486 48 1 4.8594 8.2008 3.4118 49 1 3.9703 7.4692 4.7693 50 1 4.9878 6.4527 3.7210 51 1 2.7261 9.1604 2.5317 52 1 1.3357 8.0954 2.2145 53 1 -0.1605 11.0636 3.7998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588929570.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:05 Heat of formation + Delta-G solvation = -64.503012 kcal Electronic energy + Delta-G solvation = -27197.641629 eV Core-core repulsion = 23646.446464 eV Total energy + Delta-G solvation = -3551.195165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24026 -39.19780 -38.51840 -36.04542 -35.88739 -34.31324 -32.05389 -31.18373 -29.89630 -28.98661 -27.91185 -27.32676 -25.70753 -25.17853 -23.87592 -22.75339 -22.42435 -21.66361 -19.58330 -18.87754 -18.33513 -17.33362 -17.17485 -16.92364 -16.57464 -16.09608 -15.81503 -15.57022 -15.42672 -15.20046 -14.91700 -14.61933 -14.35463 -14.21405 -14.02483 -13.86608 -13.69777 -13.37791 -13.14999 -13.08146 -12.84070 -12.80600 -12.66903 -12.50530 -12.28488 -12.26796 -12.14667 -12.09654 -11.99706 -11.87043 -11.82722 -11.59136 -11.46210 -11.39042 -10.87309 -10.74369 -10.50828 -9.82244 -9.31330 -9.03114 -8.13557 -6.20618 0.40457 0.54421 1.40267 1.41062 1.53622 2.24415 2.44071 2.80774 3.20214 3.48872 3.80716 3.87961 3.90404 3.97984 4.10318 4.14593 4.20359 4.22725 4.28375 4.33443 4.37619 4.42960 4.49737 4.60106 4.62540 4.71676 4.75859 4.81611 4.83305 4.85761 4.91509 4.95612 5.02557 5.06782 5.11305 5.19560 5.20091 5.20893 5.29653 5.41022 5.42266 5.50402 5.53053 5.56184 5.57480 5.65121 5.67045 5.86665 5.92539 5.93565 6.08088 6.37285 6.47745 6.53295 6.94328 7.46588 8.99120 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.003087 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.121593 B = 9067.749969 C =11090.384886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.120 4.120 4 C 0.058 3.942 5 O -0.334 6.334 6 C 0.119 3.881 7 C -0.215 4.215 8 C -0.083 4.083 9 C -0.162 4.162 10 C -0.073 4.073 11 C -0.129 4.129 12 C 0.110 3.890 13 N -0.673 5.673 14 C 0.082 3.918 15 C -0.054 4.054 16 C -0.118 4.118 17 C -0.105 4.105 18 C 0.041 3.959 19 C -0.513 4.513 20 H 0.066 0.934 21 C -0.005 4.005 22 N -0.938 5.938 23 Si 0.957 3.043 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.341 0.659 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.034 0.966 48 H 0.032 0.968 49 H 0.039 0.961 50 H 0.063 0.937 51 H -0.015 1.015 52 H -0.017 1.017 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 -23.773 -9.849 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.248 6.248 6 C 0.074 3.926 7 C -0.234 4.234 8 C -0.101 4.101 9 C -0.180 4.180 10 C -0.092 4.092 11 C -0.130 4.130 12 C -0.019 4.019 13 N -0.304 5.304 14 C -0.047 4.047 15 C -0.055 4.055 16 C -0.176 4.176 17 C -0.162 4.162 18 C 0.004 3.996 19 C -0.551 4.551 20 H 0.084 0.916 21 C -0.201 4.201 22 N -0.580 5.580 23 Si 0.782 3.218 24 H -0.185 1.185 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.160 0.840 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.004 0.996 52 H 0.001 0.999 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.955 -23.134 -9.694 27.787 hybrid contribution -1.572 0.377 0.187 1.628 sum 10.383 -22.757 -9.506 26.759 Atomic orbital electron populations 1.21780 0.95324 1.02353 1.01801 1.21395 0.96304 0.94308 1.03154 1.21591 0.92419 0.98843 1.02891 1.22993 0.95470 0.80942 1.02256 1.86057 1.19237 1.30888 1.88607 1.19057 0.82606 0.94089 0.96874 1.21457 0.94793 0.98115 1.08997 1.21295 0.94300 0.98174 0.96335 1.21358 1.00884 0.92211 1.03536 1.21105 0.91273 1.00322 0.96504 1.19256 0.94780 0.91713 1.07296 1.20635 0.96049 0.95465 0.89758 1.60641 1.41449 1.07521 1.20830 1.21834 0.93289 0.93477 0.96082 1.20487 0.95505 0.95723 0.93745 1.21644 0.98646 0.96371 1.00921 1.21479 0.96292 1.00173 0.98272 1.18990 0.92822 0.92211 0.95592 1.21637 1.26142 1.12187 0.95134 0.91619 1.25928 0.97004 0.96101 1.01100 1.70120 1.35458 1.18321 1.34057 0.85511 0.77906 0.78124 0.80218 1.18464 1.20773 1.20771 0.91395 0.93195 0.92850 0.90621 0.90927 0.92045 0.91759 0.90839 0.91100 0.83852 0.83216 0.83683 0.84604 0.95549 0.90232 0.84020 0.92173 0.96939 0.92183 0.93246 0.94686 0.94833 0.94159 0.91802 0.99617 0.99904 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.11 -1.39 5.93 30.60 0.18 -1.21 16 3 C -0.12 -2.01 5.58 30.59 0.17 -1.84 16 4 C 0.06 0.98 4.74 71.98 0.34 1.32 16 5 O -0.33 -8.10 9.30 -92.38 -0.86 -8.95 16 6 C 0.12 2.83 6.65 22.51 0.15 2.98 16 7 C -0.22 -3.98 9.04 22.37 0.20 -3.78 16 8 C -0.08 -1.33 10.04 22.26 0.22 -1.11 16 9 C -0.16 -2.79 10.04 22.28 0.22 -2.57 16 10 C -0.07 -1.57 9.67 22.25 0.22 -1.35 16 11 C -0.13 -3.25 5.41 -19.77 -0.11 -3.36 16 12 C 0.11 3.08 5.47 85.56 0.47 3.55 16 13 N -0.67 -21.34 5.70 -517.92 -2.95 -24.30 16 14 C 0.08 3.08 4.65 86.31 0.40 3.48 16 15 C -0.05 -2.28 0.60 -52.18 -0.03 -2.31 16 16 C -0.12 -4.61 7.89 71.98 0.57 -4.05 16 17 C -0.10 -4.20 8.06 71.98 0.58 -3.62 16 18 C 0.04 2.22 4.04 29.85 0.12 2.34 16 19 C -0.51 -29.06 7.65 25.60 0.20 -28.86 16 20 H 0.07 3.58 5.68 -2.91 -0.02 3.56 16 21 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 22 N -0.94 -58.28 13.29 21.45 0.28 -57.99 16 23 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 24 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 35 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 36 H 0.14 1.98 6.30 -2.91 -0.02 1.96 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.14 2.59 8.04 -2.91 -0.02 2.56 16 40 H 0.03 0.79 7.86 -2.39 -0.02 0.77 16 41 H 0.08 2.13 8.00 -2.38 -0.02 2.11 16 42 H 0.34 10.90 6.68 -89.69 -0.60 10.30 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 45 H 0.06 2.00 6.57 -2.39 -0.02 1.99 16 46 H 0.05 2.05 6.62 -2.39 -0.02 2.03 16 47 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.04 1.70 6.62 -2.39 -0.02 1.68 16 50 H 0.06 2.27 7.60 -2.38 -0.02 2.26 16 51 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 52 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 53 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.73 415.55 3.83 -62.89 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.25 Total: 22.65 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 5.08 Total: -41.50 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.67 Total: -82.29 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.86 Total: -8.95 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.73 3.83 -62.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588929570.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds