Wall clock time and date at job start Tue Mar 31 2020 12:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00109 * 2 1 4 4 C 1.52996 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47126 * 175.00224 * 4 3 2 6 6 C 1.53008 * 109.47045 * 55.00159 * 4 3 2 7 7 C 1.52996 * 109.46981 * 161.71608 * 6 4 3 8 8 C 1.52997 * 109.47198 * 50.59646 * 7 6 4 9 9 C 1.53004 * 109.46891 * 170.59913 * 7 6 4 10 10 C 1.52997 * 109.46989 * 290.59553 * 7 6 4 11 11 N 1.46904 * 109.47383 * 295.00411 * 4 3 2 12 12 C 1.46905 * 110.99467 * 281.61917 * 11 4 3 13 13 H 1.08993 * 109.47235 * 325.40410 * 12 11 4 14 14 C 1.53000 * 109.46805 * 205.40301 * 12 11 4 15 15 C 1.50700 * 109.46915 * 72.13979 * 14 12 11 16 16 H 1.07993 * 120.00479 * 6.22939 * 15 14 12 17 17 C 1.37876 * 119.99764 * 186.22617 * 15 14 12 18 18 N 1.31523 * 120.00352 * 359.72871 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47019 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47220 * 120.00238 * 19 17 15 22 22 H 1.48504 * 109.47019 * 240.00225 * 19 17 15 23 23 C 1.50700 * 109.46830 * 85.40349 * 12 11 4 24 24 C 1.38231 * 120.00147 * 39.73090 * 23 12 11 25 25 C 1.38236 * 119.99896 * 179.78644 * 24 23 12 26 26 C 1.38239 * 120.00180 * 0.43597 * 25 24 23 27 27 C 1.38236 * 119.99576 * 359.80851 * 26 25 24 28 28 C 1.38233 * 120.00015 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47398 * 300.00309 * 1 2 3 31 31 H 1.09009 * 109.47019 * 59.99977 * 1 2 3 32 32 H 1.09006 * 109.46746 * 59.99570 * 3 2 1 33 33 H 1.09000 * 109.46627 * 300.00044 * 3 2 1 34 34 H 1.08994 * 109.47086 * 281.71903 * 6 4 3 35 35 H 1.09004 * 109.46472 * 41.71405 * 6 4 3 36 36 H 1.09002 * 109.46986 * 61.74506 * 8 7 6 37 37 H 1.09005 * 109.47036 * 181.74034 * 8 7 6 38 38 H 1.08994 * 109.47240 * 301.74490 * 8 7 6 39 39 H 1.09002 * 109.47217 * 59.99800 * 9 7 6 40 40 H 1.08997 * 109.47011 * 179.97438 * 9 7 6 41 41 H 1.08997 * 109.46701 * 299.99747 * 9 7 6 42 42 H 1.08997 * 109.47310 * 60.00601 * 10 7 6 43 43 H 1.09005 * 109.47166 * 180.02562 * 10 7 6 44 44 H 1.09002 * 109.47271 * 300.00293 * 10 7 6 45 45 H 1.00892 * 111.00033 * 157.66365 * 11 4 3 46 46 H 1.09008 * 109.46998 * 312.14490 * 14 12 11 47 47 H 1.08996 * 109.47376 * 192.14298 * 14 12 11 48 48 H 0.96994 * 120.00154 * 179.97438 * 18 17 15 49 49 H 1.08004 * 120.00209 * 359.97438 * 24 23 12 50 50 H 1.07999 * 119.99930 * 180.26672 * 25 24 23 51 51 H 1.08000 * 119.99951 * 179.83712 * 26 25 24 52 52 H 1.08000 * 120.00077 * 180.02562 * 27 26 25 53 53 H 1.07998 * 119.99796 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 -0.0889 6 6 3.9790 0.3194 -1.1807 7 6 5.4640 0.5597 -1.4596 8 6 6.2569 0.4163 -0.1590 9 6 5.9643 -0.4670 -2.4778 10 6 5.6558 1.9699 -2.0210 11 7 3.9769 0.5627 1.2561 12 6 3.9683 1.5354 2.3570 13 1 4.2439 2.5184 1.9754 14 6 4.9730 1.1036 3.4269 15 6 6.3743 1.3240 2.9182 16 1 6.5338 1.8233 1.9740 17 6 7.4529 0.8884 3.6584 18 7 7.2590 0.2851 4.8109 19 14 9.1900 1.1623 3.0282 20 1 9.1372 1.8637 1.7204 21 1 9.9458 1.9886 4.0036 22 1 9.8677 -0.1482 2.8595 23 6 2.5886 1.5993 2.9599 24 6 1.8529 0.4410 3.1267 25 6 0.5891 0.4991 3.6839 26 6 0.0575 1.7166 4.0660 27 6 0.7913 2.8755 3.8945 28 6 2.0568 2.8168 3.3415 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8197 -0.7319 -0.9411 35 1 3.3961 0.5832 -2.0633 36 1 6.1452 -0.5978 0.2247 37 1 7.3107 0.6178 -0.3517 38 1 5.8797 1.1267 0.5766 39 1 5.3994 -0.3649 -3.4044 40 1 7.0222 -0.2956 -2.6768 41 1 5.8276 -1.4717 -2.0777 42 1 5.2995 2.7013 -1.2957 43 1 6.7138 2.1409 -2.2202 44 1 5.0909 2.0720 -2.9476 45 1 4.8886 0.1436 1.1510 46 1 4.8308 0.0468 3.6535 47 1 4.8175 1.6930 4.3305 48 1 8.0178 -0.0217 5.3314 49 1 2.2666 -0.5098 2.8246 50 1 0.0160 -0.4064 3.8182 51 1 -0.9309 1.7623 4.4988 52 1 0.3761 3.8267 4.1933 53 1 2.6299 3.7223 3.2071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593606359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:55 Heat of formation + Delta-G solvation = -23.821913 kcal Electronic energy + Delta-G solvation = -29553.677930 eV Core-core repulsion = 26004.246830 eV Total energy + Delta-G solvation = -3549.431100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.61082 -38.29110 -37.01503 -35.33258 -32.93144 -31.56572 -30.35852 -29.61516 -27.79149 -27.10886 -26.82607 -26.62409 -25.13186 -24.24332 -22.08674 -21.80021 -20.35869 -19.49480 -18.45901 -16.84214 -16.19593 -16.00345 -15.56665 -15.39777 -14.77063 -14.56694 -14.53885 -14.27293 -14.11093 -13.90101 -13.40912 -13.17233 -13.01248 -12.77843 -12.37834 -12.20899 -12.11692 -11.92003 -11.88082 -11.78992 -11.45652 -11.34418 -11.27889 -11.06843 -11.04608 -10.84207 -10.67025 -10.52051 -10.45411 -10.39765 -10.17899 -10.00595 -9.79288 -9.42459 -9.23688 -9.02720 -8.43285 -8.36096 -7.94724 -7.53934 -6.04747 -4.08262 1.90879 1.98413 3.26545 3.35565 3.37040 4.17007 4.34617 4.42229 4.87083 4.97230 5.08609 5.15580 5.31510 5.37161 5.40848 5.42102 5.48925 5.52199 5.58243 5.64203 5.71187 5.73319 5.80499 5.82031 5.87153 5.92270 5.98424 6.01300 6.06255 6.11870 6.19365 6.21731 6.25778 6.28694 6.35061 6.41006 6.48651 6.56225 6.59963 6.63897 6.75419 6.79701 6.91676 6.96283 7.06254 7.29746 7.47739 7.57214 7.61871 7.65689 7.94454 8.10397 8.29159 8.38102 8.98019 9.56125 11.05791 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.006224 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.257853 B = 4497.665395 C = 6759.058881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.069 3.931 4 C 0.091 3.909 5 H 0.051 0.949 6 C -0.099 4.099 7 C -0.076 4.076 8 C -0.169 4.169 9 C -0.137 4.137 10 C -0.141 4.141 11 N -0.681 5.681 12 C 0.124 3.876 13 H 0.038 0.962 14 C 0.026 3.974 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.882 3.118 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.283 1.283 23 C -0.049 4.049 24 C -0.074 4.074 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.028 0.972 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.371 0.629 46 H 0.033 0.967 47 H 0.018 0.982 48 H 0.260 0.740 49 H 0.130 0.870 50 H 0.110 0.890 51 H 0.108 0.892 52 H 0.110 0.890 53 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.162 1.776 -10.649 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C -0.008 4.008 4 C -0.019 4.019 5 H 0.069 0.931 6 C -0.137 4.137 7 C -0.076 4.076 8 C -0.226 4.226 9 C -0.195 4.195 10 C -0.198 4.198 11 N -0.324 5.324 12 C 0.014 3.986 13 H 0.056 0.944 14 C -0.011 4.011 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.710 3.290 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.050 4.050 24 C -0.092 4.092 25 C -0.150 4.150 26 C -0.158 4.158 27 C -0.149 4.149 28 C -0.148 4.148 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.203 0.797 46 H 0.052 0.948 47 H 0.037 0.963 48 H 0.070 0.930 49 H 0.148 0.852 50 H 0.129 0.871 51 H 0.126 0.874 52 H 0.128 0.872 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.510 1.245 -10.359 15.535 hybrid contribution 1.492 1.001 -0.353 1.831 sum -10.018 2.247 -10.711 14.837 Atomic orbital electron populations 1.22645 0.82879 1.01839 0.99160 1.87976 1.17744 1.27329 1.95082 1.22723 0.94072 0.84940 0.99066 1.21588 0.92517 0.96722 0.91070 0.93145 1.21645 0.93918 1.01407 0.96729 1.20680 0.95719 0.95033 0.96172 1.22592 0.99682 1.03592 0.96719 1.21845 1.00450 0.98918 0.98261 1.21913 1.01190 0.96502 1.00223 1.60678 1.37141 1.32291 1.02329 1.20724 0.91077 0.93745 0.93022 0.94434 1.19280 0.91433 0.97904 0.92477 1.21297 0.90908 1.38117 1.05995 0.92166 1.24940 0.98857 0.95062 0.94844 1.69974 1.30751 1.39167 1.12684 0.86693 0.85304 0.77993 0.79028 1.19587 1.21123 1.20952 1.20220 0.96107 0.92474 0.96217 1.21038 0.93070 0.99174 0.95953 1.21104 0.96506 0.97071 1.00315 1.20940 0.99573 0.93069 1.02235 1.20930 0.95153 0.97757 1.01012 1.21037 0.95488 0.97660 1.00585 0.90389 0.94372 0.95366 0.92661 0.94992 0.90418 0.92293 0.91842 0.93244 0.88562 0.93313 0.93062 0.92616 0.92579 0.92996 0.93249 0.79712 0.94841 0.96327 0.92993 0.85231 0.87144 0.87358 0.87190 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.36 -5.50 9.96 -35.23 -0.35 -5.85 16 3 C 0.07 1.03 4.98 37.16 0.18 1.21 16 4 C 0.09 1.42 1.76 -67.71 -0.12 1.30 16 5 H 0.05 0.81 5.59 -51.93 -0.29 0.52 16 6 C -0.10 -1.41 3.61 -26.73 -0.10 -1.50 16 7 C -0.08 -1.06 0.80 -154.51 -0.12 -1.18 16 8 C -0.17 -2.85 6.43 37.16 0.24 -2.61 16 9 C -0.14 -1.70 8.46 37.16 0.31 -1.39 16 10 C -0.14 -1.83 8.31 37.16 0.31 -1.52 16 11 N -0.68 -12.38 4.96 -100.95 -0.50 -12.88 16 12 C 0.12 2.46 1.89 -68.86 -0.13 2.33 16 13 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 14 C 0.03 0.64 4.48 -27.88 -0.12 0.52 16 15 C -0.53 -13.48 7.68 -34.44 -0.26 -13.75 16 16 H 0.06 1.49 5.58 -52.49 -0.29 1.19 16 17 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.05 -0.90 2.64 -104.63 -0.28 -1.18 16 24 C -0.07 -1.30 8.50 -39.58 -0.34 -1.64 16 25 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 26 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 27 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 28 C -0.13 -2.16 9.38 -39.58 -0.37 -2.54 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.06 0.89 5.29 -51.93 -0.27 0.61 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 0.77 7.99 -51.93 -0.41 0.36 16 36 H 0.06 1.11 7.36 -51.93 -0.38 0.73 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.81 2.39 -51.93 -0.12 1.69 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.76 6.46 -51.93 -0.34 0.42 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.37 7.20 3.20 -39.30 -0.13 7.08 16 46 H 0.03 0.90 8.14 -51.92 -0.42 0.47 16 47 H 0.02 0.50 8.08 -51.93 -0.42 0.08 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.13 2.45 7.71 -52.48 -0.40 2.04 16 50 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 51 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 52 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 53 H 0.11 1.80 8.04 -52.49 -0.42 1.38 16 LS Contribution 399.73 15.07 6.02 6.02 Total: -1.00 -27.67 399.73 -9.43 -37.10 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -9.34 Total: 10.69 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -0.97 Total: -25.92 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.24 Total: -37.78 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.35 Total: -5.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.67 -9.43 -37.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593606359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.279 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds