Wall clock time and date at job start Tue Mar 31 2020 12:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00109 * 2 1 4 4 C 1.52996 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47126 * 175.00224 * 4 3 2 6 6 C 1.53008 * 109.47045 * 55.00159 * 4 3 2 7 7 C 1.52996 * 109.46981 * 161.71608 * 6 4 3 8 8 C 1.52997 * 109.47198 * 50.59646 * 7 6 4 9 9 C 1.53004 * 109.46891 * 170.59913 * 7 6 4 10 10 C 1.52997 * 109.46989 * 290.59553 * 7 6 4 11 11 N 1.46904 * 109.47383 * 295.00411 * 4 3 2 12 12 C 1.46905 * 110.99467 * 281.61917 * 11 4 3 13 13 H 1.08993 * 109.47235 * 325.40410 * 12 11 4 14 14 C 1.53000 * 109.46805 * 205.40301 * 12 11 4 15 15 C 1.50700 * 109.46915 * 72.13979 * 14 12 11 16 16 H 1.07993 * 120.00479 * 6.22939 * 15 14 12 17 17 C 1.37876 * 119.99764 * 186.22617 * 15 14 12 18 18 N 1.31523 * 120.00352 * 359.72871 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47019 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47220 * 120.00238 * 19 17 15 22 22 H 1.48504 * 109.47019 * 240.00225 * 19 17 15 23 23 C 1.50700 * 109.46830 * 85.40349 * 12 11 4 24 24 C 1.38231 * 120.00147 * 39.73090 * 23 12 11 25 25 C 1.38236 * 119.99896 * 179.78644 * 24 23 12 26 26 C 1.38239 * 120.00180 * 0.43597 * 25 24 23 27 27 C 1.38236 * 119.99576 * 359.80851 * 26 25 24 28 28 C 1.38233 * 120.00015 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47398 * 300.00309 * 1 2 3 31 31 H 1.09009 * 109.47019 * 59.99977 * 1 2 3 32 32 H 1.09006 * 109.46746 * 59.99570 * 3 2 1 33 33 H 1.09000 * 109.46627 * 300.00044 * 3 2 1 34 34 H 1.08994 * 109.47086 * 281.71903 * 6 4 3 35 35 H 1.09004 * 109.46472 * 41.71405 * 6 4 3 36 36 H 1.09002 * 109.46986 * 61.74506 * 8 7 6 37 37 H 1.09005 * 109.47036 * 181.74034 * 8 7 6 38 38 H 1.08994 * 109.47240 * 301.74490 * 8 7 6 39 39 H 1.09002 * 109.47217 * 59.99800 * 9 7 6 40 40 H 1.08997 * 109.47011 * 179.97438 * 9 7 6 41 41 H 1.08997 * 109.46701 * 299.99747 * 9 7 6 42 42 H 1.08997 * 109.47310 * 60.00601 * 10 7 6 43 43 H 1.09005 * 109.47166 * 180.02562 * 10 7 6 44 44 H 1.09002 * 109.47271 * 300.00293 * 10 7 6 45 45 H 1.00892 * 111.00033 * 157.66365 * 11 4 3 46 46 H 1.09008 * 109.46998 * 312.14490 * 14 12 11 47 47 H 1.08996 * 109.47376 * 192.14298 * 14 12 11 48 48 H 0.96994 * 120.00154 * 179.97438 * 18 17 15 49 49 H 1.08004 * 120.00209 * 359.97438 * 24 23 12 50 50 H 1.07999 * 119.99930 * 180.26672 * 25 24 23 51 51 H 1.08000 * 119.99951 * 179.83712 * 26 25 24 52 52 H 1.08000 * 120.00077 * 180.02562 * 27 26 25 53 53 H 1.07998 * 119.99796 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 -0.0889 6 6 3.9790 0.3194 -1.1807 7 6 5.4640 0.5597 -1.4596 8 6 6.2569 0.4163 -0.1590 9 6 5.9643 -0.4670 -2.4778 10 6 5.6558 1.9699 -2.0210 11 7 3.9769 0.5627 1.2561 12 6 3.9683 1.5354 2.3570 13 1 4.2439 2.5184 1.9754 14 6 4.9730 1.1036 3.4269 15 6 6.3743 1.3240 2.9182 16 1 6.5338 1.8233 1.9740 17 6 7.4529 0.8884 3.6584 18 7 7.2590 0.2851 4.8109 19 14 9.1900 1.1623 3.0282 20 1 9.1372 1.8637 1.7204 21 1 9.9458 1.9886 4.0036 22 1 9.8677 -0.1482 2.8595 23 6 2.5886 1.5993 2.9599 24 6 1.8529 0.4410 3.1267 25 6 0.5891 0.4991 3.6839 26 6 0.0575 1.7166 4.0660 27 6 0.7913 2.8755 3.8945 28 6 2.0568 2.8168 3.3415 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8197 -0.7319 -0.9411 35 1 3.3961 0.5832 -2.0633 36 1 6.1452 -0.5978 0.2247 37 1 7.3107 0.6178 -0.3517 38 1 5.8797 1.1267 0.5766 39 1 5.3994 -0.3649 -3.4044 40 1 7.0222 -0.2956 -2.6768 41 1 5.8276 -1.4717 -2.0777 42 1 5.2995 2.7013 -1.2957 43 1 6.7138 2.1409 -2.2202 44 1 5.0909 2.0720 -2.9476 45 1 4.8886 0.1436 1.1510 46 1 4.8308 0.0468 3.6535 47 1 4.8175 1.6930 4.3305 48 1 8.0178 -0.0217 5.3314 49 1 2.2666 -0.5098 2.8246 50 1 0.0160 -0.4064 3.8182 51 1 -0.9309 1.7623 4.4988 52 1 0.3761 3.8267 4.1933 53 1 2.6299 3.7223 3.2071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593606359.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:55 Heat of formation + Delta-G solvation = -37.369890 kcal Electronic energy + Delta-G solvation = -29554.265414 eV Core-core repulsion = 26004.246830 eV Total energy + Delta-G solvation = -3550.018584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92874 -39.51528 -38.13779 -36.79290 -34.80372 -33.01395 -31.61657 -31.01682 -29.45615 -28.16154 -28.11725 -27.71544 -26.29857 -25.89412 -23.60176 -23.20374 -21.63380 -20.94305 -19.66351 -18.65476 -17.64111 -17.20115 -16.82766 -16.67416 -16.44284 -15.97884 -15.85080 -15.47501 -15.23337 -15.12300 -14.75580 -14.56065 -14.37581 -14.05187 -13.92081 -13.63231 -13.54963 -13.24023 -13.08067 -13.00906 -12.91614 -12.67463 -12.63147 -12.51683 -12.43840 -12.35365 -12.17951 -11.93431 -11.88540 -11.73606 -11.41641 -11.31060 -11.19195 -11.03413 -10.83918 -10.55953 -10.35243 -9.63053 -9.29765 -8.98810 -8.15887 -6.25112 0.63752 0.72067 1.37253 1.39707 1.49987 2.40576 3.07203 3.08948 3.17865 3.51300 3.82364 3.93973 4.01731 4.16235 4.18571 4.31030 4.33516 4.37552 4.45780 4.52848 4.55960 4.63328 4.64649 4.71167 4.75142 4.79319 4.82880 4.83444 4.90378 4.93381 4.95544 4.97949 4.99770 5.02054 5.10825 5.17378 5.24969 5.28049 5.35543 5.36322 5.45751 5.46525 5.53501 5.62821 5.63247 5.73153 5.79562 5.86862 5.98295 6.22453 6.31511 6.42979 6.61920 6.81429 6.90749 7.43242 8.95850 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.006224 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.257853 B = 4497.665395 C = 6759.058881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.075 3.925 4 C 0.090 3.910 5 H 0.048 0.952 6 C -0.089 4.089 7 C -0.072 4.072 8 C -0.164 4.164 9 C -0.134 4.134 10 C -0.139 4.139 11 N -0.683 5.683 12 C 0.141 3.859 13 H 0.028 0.972 14 C 0.039 3.961 15 C -0.521 4.521 16 H 0.070 0.930 17 C 0.011 3.989 18 N -0.930 5.930 19 Si 0.945 3.055 20 H -0.257 1.257 21 H -0.285 1.285 22 H -0.282 1.282 23 C -0.069 4.069 24 C -0.087 4.087 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.143 4.143 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.361 0.639 46 H -0.001 1.001 47 H -0.015 1.015 48 H 0.260 0.740 49 H 0.107 0.893 50 H 0.132 0.868 51 H 0.144 0.856 52 H 0.140 0.860 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 2.718 -12.615 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C -0.002 4.002 4 C -0.019 4.019 5 H 0.065 0.935 6 C -0.127 4.127 7 C -0.072 4.072 8 C -0.222 4.222 9 C -0.191 4.191 10 C -0.196 4.196 11 N -0.325 5.325 12 C 0.031 3.969 13 H 0.046 0.954 14 C 0.002 3.998 15 C -0.559 4.559 16 H 0.088 0.912 17 C -0.187 4.187 18 N -0.570 5.570 19 Si 0.770 3.230 20 H -0.180 1.180 21 H -0.211 1.211 22 H -0.208 1.208 23 C -0.070 4.070 24 C -0.105 4.105 25 C -0.149 4.149 26 C -0.150 4.150 27 C -0.144 4.144 28 C -0.161 4.161 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.191 0.809 46 H 0.017 0.983 47 H 0.003 0.997 48 H 0.069 0.931 49 H 0.125 0.875 50 H 0.150 0.850 51 H 0.161 0.839 52 H 0.158 0.842 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.130 2.201 -12.346 18.157 hybrid contribution 1.886 0.697 0.298 2.033 sum -11.244 2.898 -12.048 16.732 Atomic orbital electron populations 1.22776 0.81272 1.02908 0.99731 1.87946 1.19556 1.27421 1.95208 1.22620 0.93189 0.85045 0.99357 1.21666 0.93425 0.96602 0.90238 0.93476 1.21558 0.94329 1.00116 0.96670 1.20648 0.94997 0.96523 0.95034 1.22502 0.99820 1.01883 0.97969 1.21807 1.00953 0.97954 0.98415 1.21888 1.01705 0.95156 1.00818 1.60721 1.36444 1.32017 1.03286 1.20351 0.91172 0.93194 0.92177 0.95395 1.19048 0.92911 0.95070 0.92802 1.21620 0.91432 1.36950 1.05928 0.91205 1.25757 1.02960 0.95006 0.94990 1.70115 1.31839 1.40851 1.14231 0.85695 0.80408 0.77915 0.78947 1.18043 1.21103 1.20754 1.20075 0.95435 0.93649 0.97831 1.20893 0.94357 0.97912 0.97379 1.21345 0.95532 0.98710 0.99362 1.21337 1.00765 0.92129 1.00748 1.21276 0.94095 0.99458 0.99617 1.21179 0.96740 0.97054 1.01171 0.89157 0.94824 0.93644 0.93969 0.92952 0.91869 0.90280 0.93406 0.93678 0.90736 0.91343 0.92694 0.93145 0.93589 0.92797 0.91042 0.80863 0.98305 0.99666 0.93078 0.87528 0.85029 0.83851 0.84214 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.38 -11.22 9.96 -148.98 -1.48 -12.70 16 3 C 0.08 2.16 4.98 71.98 0.36 2.52 16 4 C 0.09 2.81 1.76 44.92 0.08 2.89 16 5 H 0.05 1.51 5.59 -2.39 -0.01 1.50 16 6 C -0.09 -2.43 3.61 30.60 0.11 -2.32 16 7 C -0.07 -1.93 0.80 -52.18 -0.04 -1.97 16 8 C -0.16 -5.64 6.43 71.98 0.46 -5.18 16 9 C -0.13 -3.08 8.46 71.98 0.61 -2.47 16 10 C -0.14 -3.32 8.31 71.98 0.60 -2.72 16 11 N -0.68 -25.93 4.96 -473.29 -2.35 -28.28 16 12 C 0.14 5.89 1.89 44.17 0.08 5.97 16 13 H 0.03 1.20 7.31 -2.39 -0.02 1.18 16 14 C 0.04 2.04 4.48 29.85 0.13 2.17 16 15 C -0.52 -27.91 7.68 25.60 0.20 -27.71 16 16 H 0.07 3.55 5.58 -2.91 -0.02 3.53 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 19 Si 0.94 43.47 29.54 68.60 2.03 45.50 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 C -0.07 -2.60 2.64 -19.87 -0.05 -2.65 16 24 C -0.09 -3.13 8.50 22.27 0.19 -2.94 16 25 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 26 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 28 C -0.14 -4.77 9.38 22.27 0.21 -4.56 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.04 1.33 5.29 -2.38 -0.01 1.32 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.08 1.86 7.99 -2.38 -0.02 1.84 16 36 H 0.05 1.75 7.36 -2.39 -0.02 1.73 16 37 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 2.89 2.39 -2.39 -0.01 2.88 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.19 6.46 -2.39 -0.02 1.17 16 43 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.36 14.79 3.20 -89.70 -0.29 14.51 16 46 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 47 H -0.01 -0.87 8.08 -2.39 -0.02 -0.89 16 48 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 49 H 0.11 4.26 7.71 -2.91 -0.02 4.24 16 50 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 51 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 52 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 53 H 0.11 3.67 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -62.63 399.73 4.37 -58.26 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: 0.58 Total: 39.00 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 5.32 Total: -46.01 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.06 Total: -84.05 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.48 Total: -12.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -62.63 4.37 -58.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593606359.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.890 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds