Wall clock time and date at job start Tue Mar 31 2020 12:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47166 * 194.34150 * 3 2 1 5 5 H 1.09000 * 109.50491 * 305.07636 * 4 3 2 6 6 C 1.53116 * 109.50538 * 65.19802 * 4 3 2 7 7 C 1.53110 * 109.16207 * 177.59525 * 6 4 3 8 8 C 1.53036 * 109.28246 * 302.34482 * 7 6 4 9 9 N 1.46850 * 109.52072 * 59.17806 * 8 7 6 10 10 C 1.46902 * 111.00174 * 174.16200 * 9 8 7 11 11 C 1.53004 * 109.47044 * 294.21440 * 10 9 8 12 12 C 1.52993 * 109.46932 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.46846 * 110.99620 * 293.95186 * 13 12 11 15 15 C 1.53040 * 109.52147 * 185.83899 * 14 13 12 16 16 C 1.53127 * 109.27558 * 300.82114 * 15 14 13 17 17 C 1.53114 * 109.16271 * 57.65583 * 16 15 14 18 18 H 1.09004 * 109.50579 * 62.32256 * 17 16 15 19 19 C 1.50701 * 109.50705 * 182.40239 * 17 16 15 20 20 H 1.08002 * 119.99761 * 119.91484 * 19 17 16 21 21 C 1.37871 * 119.99694 * 300.20047 * 19 17 16 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 17 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 17 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.46849 * 110.99343 * 58.20362 * 13 12 11 28 28 C 1.46850 * 111.19882 * 298.25933 * 9 8 7 29 29 H 1.09010 * 109.46910 * 74.34168 * 3 2 1 30 30 H 1.09006 * 109.47622 * 314.34614 * 3 2 1 31 31 H 1.08998 * 109.52158 * 297.50835 * 6 4 3 32 32 H 1.09004 * 109.51700 * 57.62768 * 6 4 3 33 33 H 1.09001 * 109.50299 * 62.28590 * 7 6 4 34 34 H 1.08998 * 109.50466 * 182.36280 * 7 6 4 35 35 H 1.08996 * 109.46569 * 299.16937 * 8 7 6 36 36 H 1.09002 * 109.46932 * 179.19271 * 8 7 6 37 37 H 1.08998 * 109.47501 * 174.21116 * 10 9 8 38 38 H 1.08999 * 109.46975 * 54.20629 * 10 9 8 39 39 H 1.08998 * 109.47236 * 59.99513 * 11 10 9 40 40 H 1.08999 * 109.46572 * 299.99436 * 11 10 9 41 41 H 1.08998 * 109.47593 * 59.99688 * 12 11 10 42 42 H 1.09007 * 109.47266 * 299.99699 * 12 11 10 43 43 H 1.08994 * 109.46378 * 65.82818 * 14 13 12 44 44 H 1.09001 * 109.46640 * 305.85043 * 14 13 12 45 45 H 1.08995 * 109.50721 * 180.88303 * 15 14 13 46 46 H 1.08994 * 109.50464 * 60.75853 * 15 14 13 47 47 H 1.08993 * 109.52407 * 297.74468 * 16 15 14 48 48 H 1.09002 * 109.56849 * 177.58985 * 16 15 14 49 49 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 50 50 H 1.08991 * 109.49862 * 54.16299 * 27 13 12 51 51 H 1.08999 * 109.42815 * 294.19525 * 27 13 12 52 52 H 1.08996 * 109.45978 * 181.75674 * 28 9 8 53 53 H 1.08993 * 109.46227 * 301.72513 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3984 0.3573 5 1 2.6817 2.1296 -0.3236 6 6 2.7168 1.7362 1.7960 7 6 3.2816 3.1106 2.1654 8 6 4.8020 3.0955 1.9919 9 7 5.1337 2.7683 0.5992 10 6 6.5791 2.8801 0.3621 11 6 7.0089 4.3410 0.5109 12 6 8.5141 4.4575 0.2632 13 7 8.9266 5.8602 0.4055 14 6 8.3337 6.6926 -0.6489 15 6 8.8976 8.1124 -0.5575 16 6 8.5759 8.6962 0.8211 17 6 9.1631 7.7849 1.9023 18 1 10.2479 7.7524 1.8012 19 6 8.8006 8.3207 3.2634 20 1 8.2219 7.7153 3.9454 21 6 9.2026 9.5858 3.6357 22 7 8.8815 10.0556 4.8215 23 14 10.2034 10.6328 2.4560 24 1 9.2870 11.4419 1.6128 25 1 11.0926 11.5369 3.2288 26 1 11.0261 9.7521 1.5885 27 6 8.5924 6.3742 1.7399 28 6 4.6426 1.4328 0.2361 29 1 2.9714 -0.2766 -0.9896 30 1 2.9718 -0.7175 0.7349 31 1 1.6300 1.7552 1.8766 32 1 3.1191 0.9822 2.4726 33 1 2.8485 3.8692 1.5135 34 1 3.0354 3.3385 3.2025 35 1 5.2357 2.3462 2.6541 36 1 5.2058 4.0770 2.2404 37 1 6.8099 2.5343 -0.6455 38 1 7.1148 2.2682 1.0878 39 1 6.7781 4.6867 1.5185 40 1 6.4732 4.9529 -0.2149 41 1 8.7444 4.1119 -0.7445 42 1 9.0502 3.8454 0.9887 43 1 7.2515 6.7229 -0.5223 44 1 8.5734 6.2688 -1.6242 45 1 8.4456 8.7340 -1.3303 46 1 9.9781 8.0845 -0.6977 47 1 7.4951 8.7604 0.9463 48 1 9.0123 9.6914 0.9070 49 1 9.1647 10.9455 5.0835 50 1 9.0200 5.7197 2.4994 51 1 7.5090 6.4052 1.8556 52 1 4.9305 1.2068 -0.7906 53 1 5.0770 0.6914 0.9066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:03 Heat of formation + Delta-G solvation = 14.005780 kcal Electronic energy + Delta-G solvation = -27326.186818 eV Core-core repulsion = 23810.688801 eV Total energy + Delta-G solvation = -3515.498017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.79455 -38.71005 -37.13384 -35.37026 -33.96585 -32.53741 -32.15529 -30.28277 -30.12106 -27.89599 -25.91962 -24.93106 -24.03390 -22.95390 -21.92335 -21.29134 -20.68065 -20.07329 -18.50832 -17.89355 -16.74317 -16.32677 -15.59600 -15.47275 -15.36560 -14.95544 -14.57877 -14.47862 -14.17162 -14.14789 -13.87063 -13.58918 -13.47495 -13.28485 -12.97841 -12.89959 -12.75666 -12.37479 -12.20803 -12.15373 -11.97172 -11.73903 -11.66915 -11.42506 -11.32649 -11.14505 -11.05260 -11.00792 -10.73239 -10.61634 -10.52694 -10.18145 -10.03756 -9.90061 -9.64234 -9.08086 -8.90538 -8.51718 -8.49290 -7.73964 -6.05183 -4.04012 2.37488 2.42647 3.30189 3.41330 3.44901 3.45065 3.74618 4.28245 4.38807 4.44204 4.44508 4.52294 4.83501 4.87536 4.94781 4.96288 5.04326 5.13517 5.18444 5.24085 5.26773 5.35818 5.37332 5.44937 5.49132 5.51466 5.57789 5.61301 5.67908 5.70441 5.80965 5.83459 5.87027 5.95248 5.98525 6.09066 6.15080 6.21952 6.29524 6.37742 6.39612 6.54812 6.64482 6.83992 6.87002 6.89081 6.90377 7.20098 7.23603 7.44399 7.65370 7.68089 7.89618 8.54113 8.97862 9.58019 11.08067 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.002402 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.302110 B =11655.011502 C =12361.438323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.209 3.791 3 C -0.023 4.023 4 C -0.081 4.081 5 H 0.089 0.911 6 C -0.120 4.120 7 C -0.117 4.117 8 C 0.051 3.949 9 N -0.539 5.539 10 C 0.063 3.937 11 C -0.157 4.157 12 C 0.059 3.941 13 N -0.540 5.540 14 C 0.062 3.938 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.019 3.981 18 H 0.034 0.966 19 C -0.512 4.512 20 H 0.072 0.928 21 C 0.070 3.930 22 N -0.903 5.903 23 Si 0.888 3.112 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.263 1.263 27 C 0.076 3.924 28 C 0.063 3.937 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.031 0.969 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.045 0.955 49 H 0.263 0.737 50 H 0.064 0.936 51 H 0.030 0.970 52 H 0.078 0.922 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 -19.671 -11.505 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.109 4.109 3 C -0.064 4.064 4 C -0.101 4.101 5 H 0.107 0.893 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.077 4.077 9 N -0.263 5.263 10 C -0.065 4.065 11 C -0.197 4.197 12 C -0.071 4.071 13 N -0.263 5.263 14 C -0.066 4.066 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.001 4.001 18 H 0.052 0.948 19 C -0.551 4.551 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.541 5.541 23 Si 0.719 3.281 24 H -0.208 1.208 25 H -0.227 1.227 26 H -0.188 1.188 27 C -0.051 4.051 28 C -0.066 4.066 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.048 0.952 52 H 0.097 0.903 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.415 -19.157 -11.730 23.987 hybrid contribution 0.377 0.132 0.117 0.417 sum -8.038 -19.025 -11.613 23.694 Atomic orbital electron populations 1.81259 1.13096 1.08387 1.08896 1.29151 0.95287 0.93290 0.93156 1.19370 0.81758 0.99882 1.05389 1.21182 0.95952 0.94661 0.98345 0.89281 1.21710 1.00638 0.97948 0.95437 1.21564 0.95046 0.97103 1.01748 1.22175 0.95984 1.01595 0.87931 1.61876 1.14793 1.26871 1.22745 1.22036 0.86379 0.97312 1.00775 1.22339 0.98225 0.95860 1.03246 1.22126 0.92511 0.90956 1.01460 1.62229 1.58673 1.00983 1.04384 1.21984 0.96454 0.93935 0.94213 1.21664 1.01035 0.94824 0.98335 1.22013 1.00861 0.99067 0.94003 1.19172 0.96456 0.90225 0.94207 0.94796 1.21000 1.34937 1.00734 0.98409 0.91033 1.24990 0.95486 0.97691 0.95009 1.69902 1.46567 1.17884 1.19788 0.86823 0.80369 0.80277 0.80652 1.20761 1.22687 1.18827 1.22085 0.97886 0.97697 0.87422 1.22044 0.93491 0.89934 1.01089 0.87082 0.87373 0.92006 0.91718 0.90960 0.91219 0.94819 0.89883 0.90881 0.94811 0.91084 0.91090 0.91519 0.91192 0.95034 0.92054 0.92901 0.91933 0.92623 0.93652 0.92734 0.91746 0.95194 0.90321 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.85 18.54 42.16 0.78 -4.07 16 2 C 0.21 1.56 14.46 -20.76 -0.30 1.26 16 3 C -0.02 -0.08 5.19 -29.52 -0.15 -0.23 16 4 C -0.08 -0.45 2.33 -90.54 -0.21 -0.66 16 5 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 6 C -0.12 -0.81 5.05 -26.61 -0.13 -0.95 16 7 C -0.12 -0.99 6.09 -26.66 -0.16 -1.15 16 8 C 0.05 0.48 5.29 -3.83 -0.02 0.46 16 9 N -0.54 -4.79 4.66 -234.67 -1.09 -5.88 16 10 C 0.06 0.58 4.96 -3.82 -0.02 0.56 16 11 C -0.16 -1.84 4.44 -26.73 -0.12 -1.96 16 12 C 0.06 0.74 5.36 -3.82 -0.02 0.72 16 13 N -0.54 -8.89 4.86 -234.67 -1.14 -10.03 16 14 C 0.06 0.97 5.05 -3.83 -0.02 0.95 16 15 C -0.12 -2.11 6.09 -26.64 -0.16 -2.27 16 16 C -0.12 -2.62 4.74 -26.61 -0.13 -2.75 16 17 C 0.02 0.43 1.85 -91.69 -0.17 0.26 16 18 H 0.03 0.84 7.21 -51.93 -0.37 0.47 16 19 C -0.51 -14.21 9.15 -34.44 -0.32 -14.53 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 21 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 22 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 23 Si 0.89 22.14 24.35 -169.99 -4.14 18.00 16 24 H -0.28 -6.82 6.88 56.52 0.39 -6.43 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 27 C 0.08 1.48 4.06 -3.83 -0.02 1.47 16 28 C 0.06 0.38 4.74 -3.83 -0.02 0.36 16 29 H 0.11 0.15 8.14 -51.92 -0.42 -0.27 16 30 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.94 6.21 -51.93 -0.32 0.61 16 37 H 0.07 0.59 7.99 -51.93 -0.41 0.18 16 38 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.07 0.96 4.79 -51.93 -0.25 0.72 16 40 H 0.07 0.91 6.68 -51.93 -0.35 0.56 16 41 H 0.07 0.74 8.06 -51.93 -0.42 0.33 16 42 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 43 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 44 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 1.04 3.33 -51.93 -0.17 0.87 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 51 H 0.03 0.59 6.60 -51.93 -0.34 0.25 16 52 H 0.08 0.39 8.01 -51.93 -0.42 -0.03 16 53 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -31.94 392.62 -10.69 -42.64 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -9.73 Total: -3.21 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.06 Total: -16.56 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.68 Total: -46.79 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.94 -10.69 -42.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.643 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds