Wall clock time and date at job start Tue Mar 31 2020 12:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47166 * 194.34150 * 3 2 1 5 5 H 1.09000 * 109.50491 * 305.07636 * 4 3 2 6 6 C 1.53116 * 109.50538 * 65.19802 * 4 3 2 7 7 C 1.53110 * 109.16207 * 177.59525 * 6 4 3 8 8 C 1.53036 * 109.28246 * 302.34482 * 7 6 4 9 9 N 1.46850 * 109.52072 * 59.17806 * 8 7 6 10 10 C 1.46902 * 111.00174 * 174.16200 * 9 8 7 11 11 C 1.53004 * 109.47044 * 294.21440 * 10 9 8 12 12 C 1.52993 * 109.46932 * 180.02562 * 11 10 9 13 13 N 1.46906 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.46846 * 110.99620 * 293.95186 * 13 12 11 15 15 C 1.53040 * 109.52147 * 185.83899 * 14 13 12 16 16 C 1.53127 * 109.27558 * 300.82114 * 15 14 13 17 17 C 1.53114 * 109.16271 * 57.65583 * 16 15 14 18 18 H 1.09004 * 109.50579 * 62.32256 * 17 16 15 19 19 C 1.50701 * 109.50705 * 182.40239 * 17 16 15 20 20 H 1.08002 * 119.99761 * 119.91484 * 19 17 16 21 21 C 1.37871 * 119.99694 * 300.20047 * 19 17 16 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 17 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 17 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.46849 * 110.99343 * 58.20362 * 13 12 11 28 28 C 1.46850 * 111.19882 * 298.25933 * 9 8 7 29 29 H 1.09010 * 109.46910 * 74.34168 * 3 2 1 30 30 H 1.09006 * 109.47622 * 314.34614 * 3 2 1 31 31 H 1.08998 * 109.52158 * 297.50835 * 6 4 3 32 32 H 1.09004 * 109.51700 * 57.62768 * 6 4 3 33 33 H 1.09001 * 109.50299 * 62.28590 * 7 6 4 34 34 H 1.08998 * 109.50466 * 182.36280 * 7 6 4 35 35 H 1.08996 * 109.46569 * 299.16937 * 8 7 6 36 36 H 1.09002 * 109.46932 * 179.19271 * 8 7 6 37 37 H 1.08998 * 109.47501 * 174.21116 * 10 9 8 38 38 H 1.08999 * 109.46975 * 54.20629 * 10 9 8 39 39 H 1.08998 * 109.47236 * 59.99513 * 11 10 9 40 40 H 1.08999 * 109.46572 * 299.99436 * 11 10 9 41 41 H 1.08998 * 109.47593 * 59.99688 * 12 11 10 42 42 H 1.09007 * 109.47266 * 299.99699 * 12 11 10 43 43 H 1.08994 * 109.46378 * 65.82818 * 14 13 12 44 44 H 1.09001 * 109.46640 * 305.85043 * 14 13 12 45 45 H 1.08995 * 109.50721 * 180.88303 * 15 14 13 46 46 H 1.08994 * 109.50464 * 60.75853 * 15 14 13 47 47 H 1.08993 * 109.52407 * 297.74468 * 16 15 14 48 48 H 1.09002 * 109.56849 * 177.58985 * 16 15 14 49 49 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 50 50 H 1.08991 * 109.49862 * 54.16299 * 27 13 12 51 51 H 1.08999 * 109.42815 * 294.19525 * 27 13 12 52 52 H 1.08996 * 109.45978 * 181.75674 * 28 9 8 53 53 H 1.08993 * 109.46227 * 301.72513 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3984 0.3573 5 1 2.6817 2.1296 -0.3236 6 6 2.7168 1.7362 1.7960 7 6 3.2816 3.1106 2.1654 8 6 4.8020 3.0955 1.9919 9 7 5.1337 2.7683 0.5992 10 6 6.5791 2.8801 0.3621 11 6 7.0089 4.3410 0.5109 12 6 8.5141 4.4575 0.2632 13 7 8.9266 5.8602 0.4055 14 6 8.3337 6.6926 -0.6489 15 6 8.8976 8.1124 -0.5575 16 6 8.5759 8.6962 0.8211 17 6 9.1631 7.7849 1.9023 18 1 10.2479 7.7524 1.8012 19 6 8.8006 8.3207 3.2634 20 1 8.2219 7.7153 3.9454 21 6 9.2026 9.5858 3.6357 22 7 8.8815 10.0556 4.8215 23 14 10.2034 10.6328 2.4560 24 1 9.2870 11.4419 1.6128 25 1 11.0926 11.5369 3.2288 26 1 11.0261 9.7521 1.5885 27 6 8.5924 6.3742 1.7399 28 6 4.6426 1.4328 0.2361 29 1 2.9714 -0.2766 -0.9896 30 1 2.9718 -0.7175 0.7349 31 1 1.6300 1.7552 1.8766 32 1 3.1191 0.9822 2.4726 33 1 2.8485 3.8692 1.5135 34 1 3.0354 3.3385 3.2025 35 1 5.2357 2.3462 2.6541 36 1 5.2058 4.0770 2.2404 37 1 6.8099 2.5343 -0.6455 38 1 7.1148 2.2682 1.0878 39 1 6.7781 4.6867 1.5185 40 1 6.4732 4.9529 -0.2149 41 1 8.7444 4.1119 -0.7445 42 1 9.0502 3.8454 0.9887 43 1 7.2515 6.7229 -0.5223 44 1 8.5734 6.2688 -1.6242 45 1 8.4456 8.7340 -1.3303 46 1 9.9781 8.0845 -0.6977 47 1 7.4951 8.7604 0.9463 48 1 9.0123 9.6914 0.9070 49 1 9.1647 10.9455 5.0835 50 1 9.0200 5.7197 2.4994 51 1 7.5090 6.4052 1.8556 52 1 4.9305 1.2068 -0.7906 53 1 5.0770 0.6914 0.9066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:02 Heat of formation + Delta-G solvation = -7.274971 kcal Electronic energy + Delta-G solvation = -27327.109620 eV Core-core repulsion = 23810.688801 eV Total energy + Delta-G solvation = -3516.420819 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.52365 -39.95661 -37.80944 -36.44395 -35.21747 -34.06582 -33.01701 -31.99529 -31.14195 -28.43450 -27.05515 -26.71642 -25.04679 -23.57332 -23.15421 -22.67389 -21.83174 -20.64019 -19.99450 -18.81544 -18.37723 -17.33218 -16.80307 -16.38227 -16.00319 -15.82990 -15.76113 -15.56967 -15.28444 -15.10354 -15.01400 -14.76092 -14.67543 -14.39985 -14.20642 -13.95528 -13.74258 -13.55122 -13.36830 -13.02326 -12.94173 -12.75087 -12.68317 -12.60028 -12.43504 -12.25051 -12.11911 -11.96098 -11.87686 -11.77722 -11.60545 -11.44361 -11.34168 -11.16734 -11.08815 -10.96343 -10.77493 -10.59121 -9.16514 -9.04893 -8.29822 -6.32850 1.30158 1.36313 1.47737 1.81632 1.88620 2.33315 2.89932 3.06129 3.17253 3.22637 3.80828 3.84479 3.97370 4.03488 4.08781 4.16897 4.19532 4.26362 4.31059 4.44518 4.47761 4.52160 4.54791 4.61466 4.65400 4.68875 4.71707 4.75143 4.79869 4.82538 4.87646 4.90393 4.91632 4.97904 5.00957 5.05913 5.09199 5.11964 5.16503 5.19840 5.22291 5.31316 5.35651 5.43697 5.48642 5.50560 5.65857 5.75992 6.18755 6.20660 6.28569 6.36600 6.42851 6.67958 6.74803 7.32816 8.87033 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.002402 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.302110 B =11655.011502 C =12361.438323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.236 3.764 3 C -0.016 4.016 4 C -0.075 4.075 5 H 0.075 0.925 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.055 3.945 9 N -0.552 5.552 10 C 0.070 3.930 11 C -0.148 4.148 12 C 0.061 3.939 13 N -0.547 5.547 14 C 0.063 3.937 15 C -0.116 4.116 16 C -0.122 4.122 17 C 0.017 3.983 18 H 0.023 0.977 19 C -0.517 4.517 20 H 0.031 0.969 21 C 0.011 3.989 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.268 1.268 25 H -0.300 1.300 26 H -0.247 1.247 27 C 0.092 3.908 28 C 0.063 3.937 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.032 0.968 49 H 0.265 0.735 50 H 0.053 0.947 51 H 0.018 0.982 52 H 0.101 0.899 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 -21.800 -15.000 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.080 4.080 3 C -0.056 4.056 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.073 4.073 9 N -0.276 5.276 10 C -0.058 4.058 11 C -0.187 4.187 12 C -0.068 4.068 13 N -0.270 5.270 14 C -0.064 4.064 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.002 4.002 18 H 0.041 0.959 19 C -0.555 4.555 20 H 0.050 0.950 21 C -0.186 4.186 22 N -0.592 5.592 23 Si 0.779 3.221 24 H -0.195 1.195 25 H -0.228 1.228 26 H -0.171 1.171 27 C -0.036 4.036 28 C -0.065 4.065 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.037 0.963 52 H 0.119 0.881 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.128 -21.316 -15.249 27.161 hybrid contribution -0.042 0.756 1.290 1.496 sum -7.170 -20.560 -13.959 25.865 Atomic orbital electron populations 1.81286 1.15475 1.10702 1.11512 1.29895 0.95959 0.91178 0.90956 1.19630 0.78802 0.98986 1.08202 1.21083 0.95940 0.95669 0.96802 0.90692 1.21695 0.99848 0.96930 0.96988 1.21531 0.94633 0.98107 1.01162 1.22049 0.96213 1.00168 0.88885 1.61841 1.14750 1.29173 1.21882 1.21955 0.86559 0.95180 1.02089 1.22190 0.97578 0.97785 1.01180 1.22217 0.92887 0.88490 1.03171 1.62174 1.59234 1.03003 1.02605 1.22045 0.96190 0.92908 0.95274 1.21652 1.01470 0.96267 0.96019 1.21908 0.99844 0.98077 0.96104 1.19102 0.95919 0.92822 0.92342 0.95861 1.21343 1.33673 1.00360 1.00140 0.95028 1.25860 0.96856 0.99206 0.96653 1.70053 1.48547 1.18565 1.22003 0.85786 0.79013 0.78630 0.78639 1.19463 1.22773 1.17125 1.21711 0.96717 0.95540 0.89651 1.22149 0.93229 0.88471 1.02623 0.83683 0.84540 0.93082 0.90397 0.92553 0.91745 0.94511 0.92773 0.88624 0.94545 0.93962 0.92032 0.88618 0.91054 0.95217 0.88562 0.90178 0.91828 0.93678 0.94938 0.92634 0.92817 0.96334 0.88113 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.19 18.54 20.00 0.37 -10.82 16 2 C 0.24 3.12 14.46 89.44 1.29 4.41 16 3 C -0.02 -0.05 5.19 28.79 0.15 0.10 16 4 C -0.07 -0.63 2.33 -10.74 -0.02 -0.65 16 5 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.12 -1.44 5.05 30.67 0.15 -1.29 16 7 C -0.12 -2.03 6.09 30.64 0.19 -1.84 16 8 C 0.05 1.04 5.29 86.32 0.46 1.50 16 9 N -0.55 -8.74 4.66 -896.35 -4.17 -12.91 16 10 C 0.07 1.10 4.96 86.30 0.43 1.52 16 11 C -0.15 -3.27 4.44 30.59 0.14 -3.13 16 12 C 0.06 1.37 5.36 86.30 0.46 1.84 16 13 N -0.55 -16.95 4.86 -896.35 -4.35 -21.30 16 14 C 0.06 1.77 5.05 86.33 0.44 2.21 16 15 C -0.12 -3.72 6.09 30.65 0.19 -3.53 16 16 C -0.12 -5.13 4.74 30.67 0.15 -4.98 16 17 C 0.02 0.82 1.85 -11.49 -0.02 0.80 16 18 H 0.02 1.15 7.21 -2.38 -0.02 1.13 16 19 C -0.52 -29.92 9.15 25.60 0.23 -29.69 16 20 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 21 C 0.01 0.65 5.45 84.65 0.46 1.11 16 22 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 23 Si 0.95 46.18 24.35 68.60 1.67 47.85 16 24 H -0.27 -12.41 6.88 99.48 0.68 -11.72 16 25 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 26 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 27 C 0.09 3.63 4.06 86.33 0.35 3.98 16 28 C 0.06 0.52 4.74 86.33 0.41 0.93 16 29 H 0.15 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H 0.14 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.05 0.75 7.48 -2.39 -0.02 0.73 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 1.32 6.21 -2.39 -0.01 1.31 16 37 H 0.10 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 39 H 0.04 1.18 4.79 -2.39 -0.01 1.17 16 40 H 0.06 1.48 6.68 -2.39 -0.02 1.46 16 41 H 0.10 1.69 8.06 -2.39 -0.02 1.67 16 42 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.03 0.86 6.75 -2.39 -0.02 0.84 16 44 H 0.10 2.10 8.06 -2.39 -0.02 2.08 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.03 1.44 3.33 -2.39 -0.01 1.43 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.05 2.19 8.12 -2.39 -0.02 2.17 16 51 H 0.02 0.77 6.60 -2.39 -0.02 0.75 16 52 H 0.10 0.46 8.01 -2.39 -0.02 0.44 16 53 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -74.49 392.62 0.04 -74.45 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.78 Total: 9.56 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 5.44 Total: -26.72 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.86 Total: -105.15 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.67 Total: 47.85 kcal Total: -74.49 0.04 -74.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.178 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds