Wall clock time and date at job start Tue Mar 31 2020 12:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46897 * 109.47190 * 2 1 4 4 C 1.46906 * 110.99898 * 199.79563 * 3 2 1 5 5 C 1.53000 * 109.47150 * 66.05120 * 4 3 2 6 6 H 1.09006 * 109.46667 * 304.99599 * 5 4 3 7 7 C 1.52998 * 109.47076 * 64.99561 * 5 4 3 8 8 C 1.52993 * 109.46955 * 184.99826 * 5 4 3 9 9 C 1.50705 * 109.47035 * 174.99603 * 8 5 4 10 10 H 1.08001 * 119.99717 * 0.02562 * 9 8 5 11 11 C 1.37875 * 120.00018 * 180.02562 * 9 8 5 12 12 N 1.31515 * 120.00270 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00113 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47065 * 90.00116 * 13 11 9 15 15 H 1.48505 * 109.47171 * 210.00377 * 13 11 9 16 16 H 1.48500 * 109.47206 * 329.99967 * 13 11 9 17 17 C 1.46898 * 110.99932 * 75.84491 * 3 2 1 18 18 H 1.09004 * 109.47284 * 314.65872 * 17 3 2 19 19 C 1.53000 * 109.47445 * 74.65675 * 17 3 2 20 20 C 1.53007 * 109.47158 * 194.66147 * 17 3 2 21 21 C 1.50695 * 109.47026 * 65.58430 * 20 17 3 22 22 C 1.38268 * 119.93977 * 263.27404 * 21 20 17 23 23 C 1.38152 * 120.05225 * 179.73187 * 22 21 20 24 24 C 1.38733 * 119.94439 * 0.53714 * 23 22 21 25 25 O 1.35898 * 120.05664 * 179.75103 * 24 23 22 26 26 C 1.42901 * 116.99714 * 359.97438 * 25 24 23 27 27 C 1.38730 * 119.88498 * 359.73717 * 24 23 22 28 28 C 1.38141 * 119.95037 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47336 * 54.34284 * 1 2 3 30 30 H 1.09000 * 109.47650 * 174.34436 * 1 2 3 31 31 H 1.09006 * 109.46823 * 294.34320 * 1 2 3 32 32 H 1.09006 * 109.46944 * 240.00185 * 2 1 3 33 33 H 1.08997 * 109.47502 * 120.00450 * 2 1 3 34 34 H 1.09006 * 109.46717 * 186.04860 * 4 3 2 35 35 H 1.08991 * 109.47337 * 306.04508 * 4 3 2 36 36 H 1.09002 * 109.47405 * 299.99668 * 7 5 4 37 37 H 1.08997 * 109.47420 * 60.00602 * 7 5 4 38 38 H 1.09009 * 109.46999 * 180.02562 * 7 5 4 39 39 H 1.09000 * 109.47467 * 294.99495 * 8 5 4 40 40 H 1.09002 * 109.47489 * 55.00045 * 8 5 4 41 41 H 0.96992 * 120.00358 * 179.97438 * 12 11 9 42 42 H 1.08993 * 109.47174 * 300.00407 * 19 17 3 43 43 H 1.09008 * 109.46751 * 60.00376 * 19 17 3 44 44 H 1.08995 * 109.47087 * 179.97438 * 19 17 3 45 45 H 1.09001 * 109.46987 * 185.58275 * 20 17 3 46 46 H 1.08994 * 109.46913 * 305.58160 * 20 17 3 47 47 H 1.07998 * 119.97517 * 359.97438 * 22 21 20 48 48 H 1.08001 * 120.02685 * 180.27392 * 23 22 21 49 49 H 1.09005 * 109.47411 * 60.00316 * 26 25 24 50 50 H 1.09007 * 109.46782 * 179.97438 * 26 25 24 51 51 H 1.08998 * 109.47897 * 299.99783 * 26 25 24 52 52 H 1.08001 * 120.02105 * 179.97438 * 27 24 23 53 53 H 1.07992 * 119.97679 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4118 1.4511 -0.4645 5 6 3.4780 1.0417 -1.9372 6 1 3.0246 0.0583 -2.0616 7 6 2.7192 2.0642 -2.7854 8 6 4.9395 0.9901 -2.3868 9 6 5.0124 0.4691 -3.7991 10 1 4.1069 0.2020 -4.3235 11 6 6.2352 0.3335 -4.4216 12 7 6.2989 -0.1206 -5.6542 13 14 7.8015 0.7948 -3.5142 14 1 8.3195 -0.3913 -2.7863 15 1 8.8197 1.2608 -4.4896 16 1 7.5104 1.8819 -2.5453 17 6 1.8789 1.9931 1.3298 18 1 0.8914 1.7651 1.7310 19 6 2.9514 1.4298 2.2643 20 6 2.0459 3.5098 1.2173 21 6 0.9099 4.0816 0.4089 22 6 1.0793 4.3283 -0.9410 23 6 0.0376 4.8473 -1.6855 24 6 -1.1755 5.1314 -1.0753 25 8 -2.2000 5.6467 -1.8044 26 6 -1.9580 5.8713 -3.1947 27 6 -1.3409 4.8882 0.2805 28 6 -0.2982 4.3636 1.0193 29 1 -0.3634 0.5991 -0.8350 30 1 -0.3634 -1.0226 -0.1013 31 1 -0.3633 0.4236 0.9364 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7838 2.4697 -0.3534 35 1 4.0254 0.7735 0.1290 36 1 1.6780 2.1010 -2.4651 37 1 3.1726 3.0476 -2.6610 38 1 2.7661 1.7723 -3.8346 39 1 5.3677 1.9917 -2.3465 40 1 5.4998 0.3285 -1.7262 41 1 7.1590 -0.2157 -6.0922 42 1 2.8324 0.3493 2.3445 43 1 3.9390 1.6579 1.8632 44 1 2.8472 1.8814 3.2508 45 1 2.0405 3.9509 2.2140 46 1 2.9918 3.7356 0.7251 47 1 2.0253 4.1115 -1.4147 48 1 0.1690 5.0357 -2.7408 49 1 -1.7017 4.9275 -3.6761 50 1 -2.8549 6.2831 -3.6577 51 1 -1.1332 6.5743 -3.3111 52 1 -2.2842 5.1089 0.7579 53 1 -0.4264 4.1745 2.0748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602442194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:34 Heat of formation + Delta-G solvation = -43.202038 kcal Electronic energy + Delta-G solvation = -28406.577770 eV Core-core repulsion = 24856.306285 eV Total energy + Delta-G solvation = -3550.271485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06418 -40.08931 -38.28199 -36.60769 -34.39774 -33.76133 -31.91436 -31.49225 -30.42058 -28.97392 -28.45399 -26.79981 -26.55682 -24.34110 -23.75447 -23.35109 -21.99845 -20.99390 -19.78757 -18.98381 -18.82792 -17.20562 -16.84044 -16.58062 -16.51886 -16.32208 -15.87557 -15.85450 -15.20116 -15.09173 -14.88075 -14.51533 -14.39833 -14.22529 -13.96799 -13.81833 -13.66425 -13.51456 -13.34494 -12.96329 -12.86810 -12.80028 -12.67222 -12.49085 -12.33055 -12.27057 -12.11287 -11.98311 -11.94640 -11.77130 -11.69442 -11.50416 -11.30336 -11.22885 -11.05632 -10.85030 -10.72244 -9.76843 -8.99950 -8.82588 -8.25277 -6.27155 0.56608 0.64773 1.35125 1.37003 1.48666 2.37785 2.47798 2.95964 3.06526 3.10270 3.92153 4.01535 4.04942 4.07749 4.16256 4.27204 4.34405 4.35653 4.38929 4.47093 4.52225 4.52809 4.58470 4.61718 4.64999 4.70466 4.73421 4.76553 4.83378 4.88089 4.94565 4.96857 4.99758 5.05885 5.10150 5.14526 5.22426 5.23844 5.28221 5.36971 5.42082 5.45577 5.47920 5.51594 5.60232 5.60910 5.75150 5.76845 5.92105 6.00582 6.29034 6.39177 6.44554 6.55756 6.80720 7.36331 8.91684 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003778 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.065298 B = 7408.734579 C = 8617.383744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.043 3.957 3 N -0.523 5.523 4 C 0.070 3.930 5 C -0.068 4.068 6 H 0.046 0.954 7 C -0.109 4.109 8 C -0.005 4.005 9 C -0.515 4.515 10 H 0.032 0.968 11 C 0.002 3.998 12 N -0.955 5.955 13 Si 0.946 3.054 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.246 1.246 17 C 0.087 3.913 18 H 0.089 0.911 19 C -0.183 4.183 20 C -0.066 4.066 21 C -0.098 4.098 22 C -0.068 4.068 23 C -0.216 4.216 24 C 0.101 3.899 25 O -0.337 6.337 26 C 0.022 3.978 27 C -0.163 4.163 28 C -0.080 4.080 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.053 0.947 50 H 0.119 0.881 51 H 0.059 0.941 52 H 0.136 0.864 53 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.712 10.402 17.870 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 N -0.247 5.247 4 C -0.058 4.058 5 C -0.086 4.086 6 H 0.065 0.935 7 C -0.166 4.166 8 C -0.043 4.043 9 C -0.553 4.553 10 H 0.050 0.950 11 C -0.194 4.194 12 N -0.596 5.596 13 Si 0.770 3.230 14 H -0.195 1.195 15 H -0.213 1.213 16 H -0.169 1.169 17 C -0.021 4.021 18 H 0.107 0.893 19 C -0.241 4.241 20 C -0.104 4.104 21 C -0.098 4.098 22 C -0.086 4.086 23 C -0.235 4.235 24 C 0.056 3.944 25 O -0.252 6.252 26 C -0.072 4.072 27 C -0.182 4.182 28 C -0.098 4.098 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.136 0.864 48 H 0.143 0.857 49 H 0.072 0.928 50 H 0.137 0.863 51 H 0.077 0.923 52 H 0.154 0.846 53 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.094 10.692 17.464 25.439 hybrid contribution 1.602 -0.745 -0.491 1.834 sum -13.492 9.947 16.973 23.855 Atomic orbital electron populations 1.21637 0.94257 1.01286 1.01795 1.22136 0.96502 0.89368 1.00441 1.62172 1.19554 1.17722 1.25251 1.22074 0.88990 1.00699 0.94051 1.20922 0.95273 0.98322 0.94132 0.93525 1.21510 0.99619 0.97599 0.97853 1.19553 0.94724 0.95887 0.94099 1.21442 0.92957 1.41868 0.99044 0.94979 1.25976 1.02974 0.94902 0.95528 1.70074 1.26288 1.48863 1.14414 0.85722 0.78635 0.79819 0.78847 1.19456 1.21267 1.16914 1.21760 0.99320 0.93592 0.87430 0.89296 1.22436 0.99686 1.01137 1.00883 1.20645 0.95958 0.93834 0.99952 1.19704 0.95953 1.00315 0.93849 1.21009 0.98343 0.95301 0.93993 1.21326 0.93981 1.07345 1.00862 1.19221 0.87133 0.95802 0.92196 1.85996 1.37192 1.78799 1.23166 1.23226 1.04311 1.01352 0.78346 1.20565 1.01136 1.05455 0.91042 1.21016 0.91419 0.96926 1.00435 0.93584 0.92052 0.92120 0.92443 0.94149 0.90651 0.95249 0.91802 0.93728 0.96080 0.96429 0.97094 0.92757 0.92995 0.92912 0.90402 0.88748 0.91758 0.86432 0.85709 0.92802 0.86256 0.92265 0.84634 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.94 71.98 0.72 -2.18 16 2 C 0.04 1.08 5.47 86.30 0.47 1.55 16 3 N -0.52 -12.99 3.49 -870.97 -3.04 -16.03 16 4 C 0.07 2.06 3.13 86.30 0.27 2.33 16 5 C -0.07 -2.60 2.28 -10.80 -0.02 -2.62 16 6 H 0.05 1.93 6.08 -2.38 -0.01 1.92 16 7 C -0.11 -4.09 8.02 71.98 0.58 -3.51 16 8 C 0.00 -0.22 3.52 29.85 0.10 -0.12 16 9 C -0.51 -29.74 8.96 25.60 0.23 -29.51 16 10 H 0.03 2.05 7.30 -2.91 -0.02 2.03 16 11 C 0.00 0.12 5.47 84.65 0.46 0.59 16 12 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 13 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 15 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 17 C 0.09 1.68 2.17 44.92 0.10 1.78 16 18 H 0.09 1.60 6.64 -2.38 -0.02 1.58 16 19 C -0.18 -3.24 8.38 71.98 0.60 -2.63 16 20 C -0.07 -1.23 4.82 29.85 0.14 -1.08 16 21 C -0.10 -2.09 4.88 -19.85 -0.10 -2.19 16 22 C -0.07 -1.72 9.10 22.26 0.20 -1.52 16 23 C -0.22 -5.43 9.04 22.37 0.20 -5.23 16 24 C 0.10 2.47 6.69 22.51 0.15 2.63 16 25 O -0.34 -7.89 10.50 -92.40 -0.97 -8.86 16 26 C 0.02 0.38 9.81 113.37 1.11 1.49 16 27 C -0.16 -3.50 9.99 22.36 0.22 -3.28 16 28 C -0.08 -1.52 9.72 22.25 0.22 -1.31 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.16 6.93 -2.38 -0.02 1.14 16 32 H 0.06 1.72 5.81 -2.38 -0.01 1.71 16 33 H 0.04 0.93 6.46 -2.39 -0.02 0.91 16 34 H 0.08 2.16 6.25 -2.38 -0.01 2.14 16 35 H 0.03 0.88 6.84 -2.39 -0.02 0.86 16 36 H 0.06 2.19 7.17 -2.39 -0.02 2.17 16 37 H 0.04 1.58 7.06 -2.39 -0.02 1.56 16 38 H 0.02 0.90 6.95 -2.38 -0.02 0.89 16 39 H 0.02 0.80 7.20 -2.39 -0.02 0.79 16 40 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 41 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 42 H 0.05 0.97 6.69 -2.39 -0.02 0.95 16 43 H 0.05 1.05 6.53 -2.38 -0.02 1.04 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 46 H 0.06 1.33 6.26 -2.39 -0.01 1.32 16 47 H 0.12 3.20 5.88 -2.91 -0.02 3.18 16 48 H 0.13 2.95 6.30 -2.91 -0.02 2.93 16 49 H 0.05 0.93 7.66 -2.38 -0.02 0.91 16 50 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 52 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 53 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -67.69 397.94 4.65 -63.04 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.82 Total: 20.46 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 5.66 Total: -44.81 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.74 Total: -76.43 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.97 Total: -8.86 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -67.69 4.65 -63.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.838 kcal (2) G-P(sol) polarization free energy of solvation -67.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds