Wall clock time and date at job start Tue Mar 31 2020 12:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47111 * 2 1 4 4 C 1.52998 * 109.46982 * 119.99243 * 2 1 3 5 5 C 1.50700 * 109.47661 * 295.00643 * 4 2 1 6 6 H 1.08000 * 119.99672 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00258 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00231 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47317 * 59.99980 * 9 7 5 11 11 H 1.48505 * 109.47317 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47314 * 299.99709 * 9 7 5 13 13 C 1.52995 * 109.47074 * 239.99591 * 2 1 3 14 14 N 1.46893 * 109.47291 * 65.00426 * 13 2 1 15 15 C 1.46901 * 110.99899 * 179.97438 * 14 13 2 16 16 C 1.53005 * 109.47142 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.47056 * 304.07873 * 16 15 14 18 18 C 1.50696 * 109.47507 * 184.07919 * 16 15 14 19 19 C 1.38237 * 119.99321 * 314.24534 * 18 16 15 20 20 C 1.38244 * 119.99788 * 179.79031 * 19 18 16 21 21 C 1.38232 * 119.99764 * 0.43713 * 20 19 18 22 22 C 1.38241 * 120.00111 * 359.81508 * 21 20 19 23 23 C 1.38228 * 120.00219 * 134.51474 * 18 16 15 24 24 C 1.52993 * 109.46992 * 64.07324 * 16 15 14 25 25 C 1.52996 * 109.47334 * 53.35646 * 24 16 15 26 26 C 1.53008 * 109.47194 * 173.35342 * 24 16 15 27 27 C 1.53000 * 109.47558 * 293.35549 * 24 16 15 28 28 O 1.42906 * 109.46654 * 306.02548 * 27 24 16 29 29 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47199 * 300.00983 * 1 2 3 31 31 H 1.08998 * 109.46831 * 60.00244 * 1 2 3 32 32 H 1.09006 * 109.47175 * 55.00440 * 4 2 1 33 33 H 1.08996 * 109.47664 * 175.00131 * 4 2 1 34 34 H 0.97004 * 120.00279 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47180 * 304.99772 * 13 2 1 36 36 H 1.09002 * 109.46658 * 185.00320 * 13 2 1 37 37 H 1.00904 * 110.99729 * 303.95197 * 14 13 2 38 38 H 1.08999 * 109.47182 * 299.99677 * 15 14 13 39 39 H 1.09001 * 109.47299 * 60.00109 * 15 14 13 40 40 H 1.07999 * 120.00406 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.99689 * 180.27283 * 20 19 18 42 42 H 1.08003 * 120.00237 * 179.83768 * 21 20 19 43 43 H 1.07998 * 120.00179 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00507 * 359.97438 * 23 18 16 45 45 H 1.09004 * 109.47074 * 63.60399 * 25 24 16 46 46 H 1.08999 * 109.47646 * 183.60886 * 25 24 16 47 47 H 1.08999 * 109.47069 * 303.60860 * 25 24 16 48 48 H 1.09005 * 109.46913 * 63.65715 * 26 24 16 49 49 H 1.08991 * 109.47208 * 183.66038 * 26 24 16 50 50 H 1.09001 * 109.46786 * 303.66186 * 26 24 16 51 51 H 1.08991 * 109.47077 * 66.02442 * 27 24 16 52 52 H 1.09003 * 109.47411 * 186.03174 * 27 24 16 53 53 H 0.96706 * 113.99580 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0805 0.9747 2.3756 7 6 1.9922 -0.4020 3.7284 8 7 2.6746 -1.5195 3.8514 9 14 1.4985 0.5632 5.2496 10 1 0.0186 0.6708 5.3089 11 1 1.9923 -0.1374 6.4623 12 1 2.0916 1.9232 5.1871 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1259 -0.6268 -3.6670 16 6 1.7026 0.1905 -4.8892 17 1 0.6214 0.3289 -4.8771 18 6 2.1013 -0.5405 -6.1452 19 6 3.3651 -1.0904 -6.2531 20 6 3.7295 -1.7648 -7.4035 21 6 2.8333 -1.8815 -8.4495 22 6 1.5713 -1.3271 -8.3436 23 6 1.2054 -0.6565 -7.1914 24 6 2.3918 1.5560 -4.8532 25 6 3.9019 1.3613 -4.7031 26 6 2.1014 2.3084 -6.1534 27 6 1.8615 2.3639 -3.6671 28 8 0.4353 2.4263 -3.7329 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 3.1263 -0.7993 1.2058 34 1 2.9212 -1.8427 4.7321 35 1 1.6055 -1.7198 -1.2950 36 1 3.1263 -0.7995 -1.2054 37 1 0.6529 0.1791 -2.4753 38 1 3.2129 -0.7040 -3.6398 39 1 1.6922 -1.6248 -3.7299 40 1 4.0667 -0.9957 -5.4375 41 1 4.7152 -2.1981 -7.4860 42 1 3.1188 -2.4061 -9.3493 43 1 0.8713 -1.4179 -9.1609 44 1 0.2195 -0.2235 -7.1087 45 1 4.2901 0.8415 -5.5791 46 1 4.3865 2.3334 -4.6131 47 1 4.1051 0.7700 -3.8103 48 1 1.0317 2.5042 -6.2287 49 1 2.6448 3.2531 -6.1557 50 1 2.4206 1.7036 -7.0022 51 1 2.1615 1.8825 -2.7364 52 1 2.2713 3.3734 -3.7027 53 1 0.0297 2.9244 -3.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602583642.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:28 Heat of formation + Delta-G solvation = -62.336784 kcal Electronic energy + Delta-G solvation = -28086.235755 eV Core-core repulsion = 24535.134525 eV Total energy + Delta-G solvation = -3551.101230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25199 -39.02119 -37.91961 -36.26436 -35.19829 -33.69695 -32.30659 -31.80745 -29.47102 -28.43326 -28.12430 -26.64319 -26.52757 -24.64034 -23.61548 -22.93443 -22.12019 -20.66663 -19.40924 -18.51197 -17.95033 -17.56709 -17.06419 -16.59720 -16.35454 -16.24091 -15.65070 -15.44605 -15.24106 -15.09801 -14.58716 -14.38657 -14.24507 -14.12644 -13.98849 -13.62480 -13.51443 -13.36372 -13.24124 -13.03900 -12.81527 -12.77498 -12.69461 -12.57908 -12.47147 -12.20351 -12.04550 -11.85364 -11.79200 -11.63429 -11.43242 -11.34150 -11.07047 -10.98434 -10.82362 -10.65326 -10.51188 -9.73016 -9.48305 -8.97353 -8.15669 -6.24583 0.52433 0.56372 1.41136 1.43602 1.51107 2.43173 2.92955 3.17934 3.26326 3.58642 3.83201 3.93728 4.06128 4.18828 4.22434 4.24507 4.28267 4.32670 4.39680 4.48693 4.51053 4.61409 4.67631 4.70311 4.77438 4.80971 4.83357 4.86201 4.92188 4.96332 5.04250 5.08190 5.11879 5.16263 5.18731 5.25899 5.27691 5.35366 5.40674 5.43781 5.51844 5.53571 5.57967 5.65840 5.67689 5.69251 5.83841 5.85747 5.92251 6.12883 6.19146 6.33492 6.55801 6.91951 7.14687 7.43690 8.96244 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.002683 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.824474 B =10433.746909 C =11014.116129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.073 3.927 14 N -0.666 5.666 15 C 0.063 3.937 16 C -0.023 4.023 17 H 0.077 0.923 18 C -0.073 4.073 19 C -0.129 4.129 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.035 4.035 25 C -0.151 4.151 26 C -0.133 4.133 27 C 0.071 3.929 28 O -0.583 6.583 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.069 0.931 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.261 0.739 35 H 0.015 0.985 36 H 0.057 0.943 37 H 0.347 0.653 38 H 0.078 0.922 39 H 0.019 0.981 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.092 0.908 52 H 0.024 0.976 53 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 4.535 -25.674 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.056 4.056 14 N -0.298 5.298 15 C -0.066 4.066 16 C -0.042 4.042 17 H 0.095 0.905 18 C -0.074 4.074 19 C -0.147 4.147 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.035 4.035 25 C -0.208 4.208 26 C -0.190 4.190 27 C -0.007 4.007 28 O -0.389 6.389 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.167 0.833 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.110 0.890 52 H 0.042 0.958 53 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.257 4.490 -26.052 26.438 hybrid contribution -0.670 -0.361 1.632 1.801 sum -0.927 4.129 -24.420 24.784 Atomic orbital electron populations 1.21647 0.95157 1.00361 1.01164 1.20964 0.95962 0.99051 0.92894 0.92005 1.19005 0.94156 0.94447 0.92896 1.21621 1.34298 1.08526 0.92000 0.91918 1.25949 0.95347 0.96086 1.02667 1.70098 1.40446 1.22989 1.24250 0.85587 0.78922 0.78829 0.78236 1.19228 1.21249 1.19183 1.21880 0.99586 0.94155 0.90004 1.60764 1.20318 1.48080 1.00658 1.22122 1.00833 0.94496 0.89121 1.20008 1.00484 0.93380 0.90307 0.90482 1.19833 0.94329 0.97710 0.95506 1.21300 0.96219 0.98444 0.98719 1.21415 1.00494 0.98997 0.93667 1.21412 0.93965 1.00274 0.99475 1.21386 0.97123 0.97869 0.98006 1.21212 0.99637 0.99915 0.93751 1.20292 0.94967 0.93458 0.94828 1.22090 0.94307 1.02077 1.02320 1.21807 1.01290 0.99408 0.96480 1.22663 0.80704 0.97061 1.00253 1.86310 1.20332 1.78564 1.53713 0.94735 0.93632 0.91214 0.99636 0.99580 0.93029 0.96662 0.92397 0.83341 0.90390 0.96317 0.85574 0.84695 0.84406 0.84549 0.85992 0.91284 0.92563 0.92189 0.92999 0.93027 0.92967 0.89020 0.95774 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.77 71.98 0.63 -3.79 16 2 C -0.07 -2.73 2.55 -10.79 -0.03 -2.76 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -29.40 8.41 25.60 0.22 -29.18 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 8 N -0.94 -57.40 13.29 21.44 0.28 -57.11 16 9 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.07 2.42 5.14 86.30 0.44 2.86 16 14 N -0.67 -17.32 2.96 -513.91 -1.52 -18.84 16 15 C 0.06 1.50 4.22 86.30 0.36 1.86 16 16 C -0.02 -0.49 1.69 -11.54 -0.02 -0.51 16 17 H 0.08 1.81 7.12 -2.38 -0.02 1.79 16 18 C -0.07 -1.48 3.37 -19.87 -0.07 -1.54 16 19 C -0.13 -2.47 7.24 22.27 0.16 -2.31 16 20 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.13 -2.41 9.07 22.27 0.20 -2.21 16 24 C -0.04 -0.72 0.41 -52.18 -0.02 -0.74 16 25 C -0.15 -2.95 7.05 71.98 0.51 -2.45 16 26 C -0.13 -2.62 8.05 71.98 0.58 -2.04 16 27 C 0.07 1.54 5.11 71.98 0.37 1.91 16 28 O -0.58 -12.13 11.62 -148.98 -1.73 -13.87 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.74 6.95 -2.39 -0.02 1.72 16 31 H 0.07 1.94 6.68 -2.39 -0.02 1.92 16 32 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.35 8.80 6.47 -89.69 -0.58 8.22 16 38 H 0.08 1.84 4.86 -2.39 -0.01 1.83 16 39 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.13 2.32 5.41 -2.91 -0.02 2.31 16 41 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.12 2.16 8.00 -2.91 -0.02 2.14 16 45 H 0.07 1.26 5.45 -2.39 -0.01 1.25 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.28 6.02 -2.39 -0.01 1.26 16 48 H 0.05 1.10 7.76 -2.38 -0.02 1.08 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.05 1.03 6.53 -2.39 -0.02 1.02 16 51 H 0.09 2.27 5.46 -2.39 -0.01 2.26 16 52 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.39 5.85 9.12 -74.05 -0.68 5.18 16 Total: -1.00 -64.00 396.65 3.30 -60.70 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.37 Total: 27.29 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 4.60 Total: -44.45 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.24 Total: -75.96 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.73 Total: -13.87 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.00 3.30 -60.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583642.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.636 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds