Wall clock time and date at job start Tue Mar 31 2020 13:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00162 * 2 1 4 4 C 1.50700 * 120.00179 * 179.97438 * 2 1 3 5 5 N 1.46907 * 109.46883 * 107.19480 * 4 2 1 6 6 C 1.46900 * 110.99930 * 163.45003 * 5 4 2 7 7 C 1.50701 * 109.46901 * 293.95039 * 6 5 4 8 8 C 1.39866 * 126.03896 * 270.00360 * 7 6 5 9 9 N 1.30846 * 108.19988 * 179.74302 * 8 7 6 10 10 N 1.40080 * 108.20418 * 0.39887 * 9 8 7 11 11 C 1.46499 * 126.03593 * 179.85255 * 10 9 8 12 12 C 1.52999 * 109.47433 * 264.69566 * 11 10 9 13 13 C 1.53001 * 109.46952 * 144.69183 * 11 10 9 14 14 C 1.34944 * 107.92809 * 359.59676 * 10 9 8 15 15 C 1.46905 * 110.99868 * 287.40168 * 5 4 2 16 16 C 1.53002 * 109.47203 * 84.26612 * 15 5 4 17 17 H 1.09003 * 109.46919 * 307.29143 * 16 15 5 18 18 C 1.52998 * 109.46607 * 67.28919 * 16 15 5 19 19 C 1.52995 * 109.47155 * 187.28887 * 16 15 5 20 20 C 1.50694 * 109.47295 * 175.00453 * 19 16 15 21 21 H 1.08004 * 120.00055 * 0.02562 * 20 19 16 22 22 C 1.37875 * 120.00289 * 179.97438 * 20 19 16 23 23 N 1.31517 * 120.00079 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99980 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47327 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46571 * 120.00226 * 24 22 20 27 27 H 1.48495 * 109.47148 * 239.99900 * 24 22 20 28 28 H 1.08003 * 120.00010 * 185.13159 * 1 2 3 29 29 H 1.08005 * 119.99952 * 5.12838 * 1 2 3 30 30 H 1.09001 * 109.47038 * 270.00488 * 3 2 1 31 31 H 1.09010 * 109.47006 * 30.00070 * 3 2 1 32 32 H 1.08996 * 109.47375 * 150.00000 * 3 2 1 33 33 H 1.09000 * 109.46860 * 347.19381 * 4 2 1 34 34 H 1.08997 * 109.47464 * 227.19183 * 4 2 1 35 35 H 1.08998 * 109.47051 * 173.95080 * 6 5 4 36 36 H 1.08998 * 109.47113 * 53.94812 * 6 5 4 37 37 H 1.07996 * 125.90102 * 359.97438 * 8 7 6 38 38 H 1.08999 * 109.47223 * 24.69861 * 11 10 9 39 39 H 1.08996 * 109.47267 * 180.02562 * 12 11 10 40 40 H 1.08995 * 109.47412 * 59.99965 * 12 11 10 41 41 H 1.09007 * 109.46771 * 299.99804 * 12 11 10 42 42 H 1.09006 * 109.47188 * 180.02562 * 13 11 10 43 43 H 1.09001 * 109.47627 * 300.00181 * 13 11 10 44 44 H 1.08993 * 109.47258 * 60.00478 * 13 11 10 45 45 H 1.08002 * 126.12858 * 180.22430 * 14 10 9 46 46 H 1.09000 * 109.46978 * 204.27024 * 15 5 4 47 47 H 1.09001 * 109.46739 * 324.27241 * 15 5 4 48 48 H 1.09002 * 109.47204 * 179.97438 * 18 16 15 49 49 H 1.09002 * 109.47539 * 299.99700 * 18 16 15 50 50 H 1.08998 * 109.47356 * 60.00000 * 18 16 15 51 51 H 1.09002 * 109.46853 * 295.00481 * 19 16 15 52 52 H 1.09003 * 109.47130 * 55.00354 * 19 16 15 53 53 H 0.96994 * 120.00257 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.6629 -1.5250 -1.3225 6 6 3.7085 -2.5550 -1.2621 7 6 4.8584 -2.0551 -0.4262 8 6 5.9692 -1.3461 -0.8948 9 7 6.7458 -1.0827 0.1248 10 7 6.1572 -1.6245 1.2747 11 6 6.7004 -1.5587 2.6337 12 6 7.4871 -2.8369 2.9310 13 6 5.5523 -1.4217 3.6357 14 6 4.9987 -2.2129 0.9105 15 6 1.6366 -1.8740 -2.3140 16 6 1.0050 -0.5946 -2.8663 17 1 0.6617 0.0273 -2.0395 18 6 2.0435 0.1741 -3.6857 19 6 -0.1831 -0.9569 -3.7596 20 6 -0.8796 0.3032 -4.2046 21 1 -0.5115 1.2662 -3.8828 22 6 -1.9863 0.2267 -5.0234 23 7 -2.4344 -0.9459 -5.4157 24 14 -2.8501 1.7887 -5.5744 25 1 -2.1548 2.9681 -4.9993 26 1 -2.8228 1.8727 -7.0569 27 1 -4.2590 1.7669 -5.1057 28 1 -0.5400 -0.9316 0.0837 29 1 -0.5400 0.9316 -0.0836 30 1 2.2451 1.6198 -1.0277 31 1 1.4744 2.0648 0.5139 32 1 3.0159 1.1748 0.5138 33 1 1.3773 -2.1207 0.2287 34 1 2.8499 -1.2703 0.7545 35 1 4.0605 -2.7749 -2.2700 36 1 3.3005 -3.4610 -0.8140 37 1 6.1524 -1.0616 -1.9204 38 1 7.3620 -0.6967 2.7192 39 1 7.8909 -2.7881 3.9422 40 1 8.3050 -2.9345 2.2172 41 1 6.8254 -3.6989 2.8455 42 1 5.9565 -1.3723 4.6468 43 1 4.9919 -0.5111 3.4239 44 1 4.8907 -2.2837 3.5503 45 1 4.3074 -2.7192 1.5679 46 1 2.0946 -2.4344 -3.1290 47 1 0.8671 -2.4841 -1.8409 48 1 1.5935 1.0854 -4.0796 49 1 2.8900 0.4322 -3.0493 50 1 2.3869 -0.4478 -4.5124 51 1 0.1725 -1.5034 -4.6331 52 1 -0.8813 -1.5799 -3.2006 53 1 -3.2132 -0.9997 -5.9914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602656893.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:43 Heat of formation + Delta-G solvation = 67.978880 kcal Electronic energy + Delta-G solvation = -28011.242167 eV Core-core repulsion = 24498.084600 eV Total energy + Delta-G solvation = -3513.157567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19730 -39.62178 -36.77039 -36.23879 -35.37644 -34.03345 -31.42185 -31.04659 -28.92890 -28.26213 -28.10786 -27.65816 -27.10622 -25.21647 -23.72626 -22.84717 -21.17315 -20.84581 -20.48421 -19.25548 -18.41922 -17.62701 -16.90412 -16.48432 -16.11795 -16.03836 -15.65347 -15.53355 -15.08945 -14.86283 -14.84664 -14.50932 -14.23494 -14.12233 -13.98535 -13.77563 -13.61085 -13.22238 -13.15399 -13.04785 -12.92639 -12.80614 -12.70893 -12.41848 -12.36049 -12.34909 -12.27362 -12.18136 -12.05980 -11.85546 -11.76694 -11.43846 -11.36215 -11.02896 -10.80512 -10.49316 -10.25653 -9.55268 -9.29290 -8.99592 -8.12632 -6.19969 1.02315 1.39309 1.39796 1.40723 1.53239 1.66313 1.91702 2.44626 3.20760 3.34866 3.57786 3.94055 3.95887 4.03156 4.10207 4.12941 4.14350 4.18609 4.38975 4.42737 4.54233 4.64604 4.68674 4.70006 4.71619 4.80228 4.81857 4.83553 4.86056 4.92739 4.93710 4.98597 5.00835 5.08344 5.13740 5.16794 5.21037 5.22871 5.25094 5.32552 5.38934 5.58817 5.59985 5.67347 5.78340 5.81349 5.92940 6.01169 6.03994 6.23469 6.29975 6.38124 6.43747 6.85726 6.96523 7.47464 8.99612 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.002798 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.418849 B =10006.462255 C =10355.150893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.101 4.101 4 C 0.094 3.906 5 N -0.524 5.524 6 C 0.135 3.865 7 C -0.232 4.232 8 C 0.056 3.944 9 N -0.333 5.333 10 N -0.367 5.367 11 C 0.147 3.853 12 C -0.157 4.157 13 C -0.160 4.160 14 C 0.065 3.935 15 C 0.074 3.926 16 C -0.084 4.084 17 H 0.082 0.918 18 C -0.110 4.110 19 C 0.037 3.963 20 C -0.515 4.515 21 H 0.056 0.944 22 C -0.003 4.003 23 N -0.936 5.936 24 Si 0.954 3.046 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.185 0.815 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.190 0.810 46 H 0.061 0.939 47 H 0.021 0.979 48 H 0.030 0.970 49 H 0.062 0.938 50 H 0.030 0.970 51 H -0.018 1.018 52 H -0.018 1.018 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.324 -3.545 20.601 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.109 4.109 3 C -0.157 4.157 4 C -0.033 4.033 5 N -0.248 5.248 6 C 0.008 3.992 7 C -0.244 4.244 8 C -0.130 4.130 9 N -0.155 5.155 10 N -0.149 5.149 11 C 0.046 3.954 12 C -0.215 4.215 13 C -0.218 4.218 14 C -0.083 4.083 15 C -0.053 4.053 16 C -0.102 4.102 17 H 0.100 0.900 18 C -0.167 4.167 19 C -0.001 4.001 20 C -0.553 4.553 21 H 0.074 0.926 22 C -0.199 4.199 23 N -0.578 5.578 24 Si 0.780 3.220 25 H -0.187 1.187 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.202 0.798 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.206 0.794 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.049 0.951 49 H 0.081 0.919 50 H 0.049 0.951 51 H 0.001 0.999 52 H 0.000 1.000 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.611 -2.632 20.894 28.777 hybrid contribution -2.099 -0.571 -1.063 2.421 sum 17.512 -3.203 19.831 26.650 Atomic orbital electron populations 1.23618 0.95717 1.01625 1.02470 1.21612 0.94547 0.96398 0.98319 1.20654 0.99471 0.93946 1.01655 1.21174 0.97136 0.93435 0.91549 1.61890 1.12015 1.44961 1.05929 1.20320 0.88481 0.91380 0.99067 1.19908 0.99673 1.11250 0.93580 1.23938 0.92795 0.97361 0.98877 1.77290 1.23445 1.22382 0.92335 1.49019 1.16456 1.42096 1.07359 1.21526 0.97079 1.00792 0.75975 1.22192 0.99943 0.95960 1.03447 1.22194 0.97283 1.03047 0.99240 1.22518 0.90544 0.99153 0.96074 1.22080 0.92438 0.96498 0.94324 1.21344 0.94434 0.96211 0.98255 0.90033 1.21454 0.98028 0.98828 0.98421 1.18983 0.92815 0.94986 0.93319 1.21609 1.11410 0.93804 1.28486 0.92553 1.25893 0.98329 0.98964 0.96755 1.70107 1.25454 1.25369 1.36851 0.85553 0.78361 0.80163 0.77939 1.18721 1.20699 1.20583 0.89411 0.88848 0.92517 0.91932 0.91945 0.94801 0.89117 0.90086 0.93831 0.79768 0.88511 0.88205 0.93381 0.91800 0.87837 0.92444 0.90855 0.79360 0.92018 0.96023 0.95120 0.91901 0.95090 0.99926 0.99984 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.10 11.98 67.79 0.81 -5.29 16 2 C -0.11 -3.07 3.58 -16.48 -0.06 -3.13 16 3 C -0.10 -2.67 10.03 71.24 0.71 -1.96 16 4 C 0.09 2.40 5.03 85.56 0.43 2.83 16 5 N -0.52 -14.48 3.96 -905.33 -3.58 -18.06 16 6 C 0.14 3.11 5.39 85.56 0.46 3.57 16 7 C -0.23 -5.06 5.04 -20.14 -0.10 -5.16 16 8 C 0.06 1.33 11.96 85.23 1.02 2.35 16 9 N -0.33 -8.31 12.58 -57.02 -0.72 -9.02 16 10 N -0.37 -7.03 3.53 -327.49 -1.15 -8.19 16 11 C 0.15 1.82 3.93 44.99 0.18 2.00 16 12 C -0.16 -1.51 9.52 71.98 0.69 -0.82 16 13 C -0.16 -1.26 8.83 71.98 0.64 -0.63 16 14 C 0.06 1.18 8.83 83.54 0.74 1.91 16 15 C 0.07 2.56 4.41 86.30 0.38 2.94 16 16 C -0.08 -3.48 2.23 -10.79 -0.02 -3.50 16 17 H 0.08 3.39 3.79 -2.39 -0.01 3.38 16 18 C -0.11 -4.36 8.90 71.98 0.64 -3.72 16 19 C 0.04 1.95 4.44 29.84 0.13 2.08 16 20 C -0.51 -29.54 8.41 25.60 0.22 -29.33 16 21 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 22 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 23 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 24 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 25 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 28 H 0.09 2.77 7.87 -2.91 -0.02 2.74 16 29 H 0.09 2.95 8.05 -2.91 -0.02 2.93 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.51 8.07 -2.38 -0.02 1.49 16 32 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 33 H 0.03 0.87 7.42 -2.39 -0.02 0.85 16 34 H 0.09 1.98 5.48 -2.39 -0.01 1.97 16 35 H 0.08 1.88 7.79 -2.39 -0.02 1.86 16 36 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 37 H 0.19 3.95 8.06 -2.91 -0.02 3.92 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.49 7.16 -2.39 -0.02 0.47 16 45 H 0.19 2.37 7.14 -2.91 -0.02 2.35 16 46 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 47 H 0.02 0.78 7.60 -2.39 -0.02 0.76 16 48 H 0.03 1.30 6.95 -2.39 -0.02 1.28 16 49 H 0.06 2.21 7.83 -2.39 -0.02 2.19 16 50 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 51 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 52 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 53 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -69.31 415.98 5.02 -64.29 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.84 Total: 16.86 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 7.32 Total: -35.53 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -5.17 Total: -93.06 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.31 5.02 -64.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602656893.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.271 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds