Wall clock time and date at job start Tue Mar 31 2020 12:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 O 1.42905 * 109.47079 * 119.99508 * 2 1 3 5 5 C 1.42898 * 113.99615 * 150.00204 * 4 2 1 6 6 H 1.08998 * 109.47584 * 30.00005 * 5 4 2 7 7 C 1.53001 * 109.47006 * 150.00285 * 5 4 2 8 8 N 1.46898 * 109.47123 * 299.99536 * 7 5 4 9 9 C 1.46897 * 111.00367 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.47540 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46874 * 300.00310 * 10 9 8 12 12 C 1.53002 * 109.46875 * 59.99801 * 10 9 8 13 13 C 1.53001 * 109.47327 * 180.02562 * 10 9 8 14 14 C 1.50699 * 109.47044 * 179.97438 * 13 10 9 15 15 H 1.08004 * 120.00132 * 0.02562 * 14 13 10 16 16 C 1.37876 * 119.99943 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99926 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47215 * 89.99819 * 18 16 14 20 20 H 1.48501 * 109.47139 * 209.99842 * 18 16 14 21 21 H 1.48504 * 109.46903 * 329.99571 * 18 16 14 22 22 C 1.50705 * 109.47335 * 270.00049 * 5 4 2 23 23 C 1.38235 * 119.99528 * 324.73065 * 22 5 4 24 24 C 1.38235 * 119.99800 * 179.78735 * 23 22 5 25 25 C 1.38240 * 119.99917 * 0.43930 * 24 23 22 26 26 C 1.38237 * 120.00040 * 359.81257 * 25 24 23 27 27 C 1.38224 * 120.00239 * 145.00105 * 22 5 4 28 28 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 29 29 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 32 32 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 33 33 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 34 34 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47178 * 59.99471 * 7 5 4 36 36 H 1.09003 * 109.47095 * 179.97438 * 7 5 4 37 37 H 1.00906 * 110.99584 * 56.04555 * 8 7 5 38 38 H 1.09004 * 109.47153 * 300.00146 * 9 8 7 39 39 H 1.09001 * 109.46992 * 60.00025 * 9 8 7 40 40 H 1.09003 * 109.47865 * 60.00074 * 11 10 9 41 41 H 1.09006 * 109.47551 * 179.97438 * 11 10 9 42 42 H 1.09005 * 109.47558 * 299.99860 * 11 10 9 43 43 H 1.09004 * 109.47182 * 60.00529 * 12 10 9 44 44 H 1.09002 * 109.46974 * 180.02562 * 12 10 9 45 45 H 1.08996 * 109.47673 * 300.00219 * 12 10 9 46 46 H 1.08991 * 109.46856 * 300.00250 * 13 10 9 47 47 H 1.08997 * 109.46725 * 60.00047 * 13 10 9 48 48 H 0.97005 * 119.99730 * 180.02562 * 17 16 14 49 49 H 1.08004 * 120.00304 * 359.97438 * 23 22 5 50 50 H 1.07998 * 120.00310 * 180.27169 * 24 23 22 51 51 H 1.07998 * 120.00048 * 179.83112 * 25 24 23 52 52 H 1.07995 * 120.00212 * 179.97438 * 26 25 24 53 53 H 1.08003 * 120.00284 * 359.97438 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3244 0.9887 6 1 3.8531 -0.7829 0.2469 7 6 4.0211 -1.3469 2.3192 8 7 4.2424 0.0303 2.7800 9 6 4.9660 0.0480 4.0583 10 6 5.1767 1.4960 4.5052 11 6 5.9917 2.2427 3.4475 12 6 3.8185 2.1789 4.6785 13 6 5.9309 1.5143 5.8363 14 6 6.1389 2.9406 6.2762 15 1 5.7697 3.7528 5.6674 16 6 6.7996 3.2087 7.4562 17 7 6.9807 4.4534 7.8403 18 14 7.4376 1.8040 8.5094 19 1 8.8243 1.4675 8.0985 20 1 7.4297 2.2125 9.9371 21 1 6.5658 0.6152 8.3299 22 6 3.0391 -2.7372 0.5160 23 6 1.9501 -3.4535 0.9763 24 6 1.7395 -4.7480 0.5393 25 6 2.6230 -5.3293 -0.3510 26 6 3.7149 -4.6148 -0.8073 27 6 3.9230 -3.3188 -0.3735 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 3.4341 -1.8883 3.0610 36 1 4.9818 -1.8437 2.1834 37 1 3.3699 0.5321 2.8518 38 1 4.3851 -0.4837 4.8120 39 1 5.9334 -0.4390 3.9349 40 1 5.4548 2.2298 2.4989 41 1 6.1414 3.2745 3.7656 42 1 6.9593 1.7562 3.3239 43 1 3.2378 1.6469 5.4321 44 1 3.9686 3.2107 4.9965 45 1 3.2816 2.1659 3.7301 46 1 5.3506 0.9822 6.5900 47 1 6.8984 1.0280 5.7123 48 1 7.4459 4.6420 8.6704 49 1 1.2621 -3.0008 1.6750 50 1 0.8863 -5.3061 0.8955 51 1 2.4600 -6.3415 -0.6903 52 1 4.4053 -5.0690 -1.5024 53 1 4.7760 -2.7606 -0.7301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602660881.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:10 Heat of formation + Delta-G solvation = -60.854063 kcal Electronic energy + Delta-G solvation = -27611.813807 eV Core-core repulsion = 24060.776873 eV Total energy + Delta-G solvation = -3551.036934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.75683 -39.26017 -38.76543 -36.00749 -34.50799 -33.53007 -32.21009 -31.70661 -29.88862 -28.65994 -27.99130 -27.91351 -26.31086 -24.30776 -23.50006 -23.11678 -22.31971 -21.57892 -19.46413 -18.86235 -18.05380 -17.72518 -16.94373 -16.51794 -16.25262 -15.87642 -15.69320 -15.56299 -15.15094 -15.11022 -14.86937 -14.57108 -14.24920 -14.21776 -14.05033 -13.75379 -13.52453 -13.46372 -13.27565 -13.05564 -13.03308 -12.79270 -12.72610 -12.50980 -12.44051 -12.24531 -12.20415 -12.05745 -11.94740 -11.89208 -11.69939 -11.48046 -11.34510 -11.00660 -10.83471 -10.69466 -10.48577 -9.80257 -9.66404 -9.27779 -8.21226 -6.21242 0.41284 0.52305 1.35773 1.37364 1.48487 2.39818 2.69650 2.85895 3.13770 3.26181 3.90274 3.99113 4.01740 4.10253 4.17201 4.18231 4.20362 4.27115 4.31583 4.34393 4.35734 4.37518 4.59542 4.65751 4.69868 4.74940 4.79978 4.80144 4.87303 4.92680 4.97922 4.99726 5.03426 5.04704 5.09531 5.10980 5.19116 5.19480 5.34240 5.36804 5.42444 5.45655 5.53628 5.58318 5.62671 5.64191 5.66896 5.76514 5.82318 6.10657 6.12593 6.39227 6.42544 6.54082 6.85898 7.41099 8.95010 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.002816 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.965082 B = 9941.426867 C =10991.929295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 C -0.172 4.172 4 O -0.382 6.382 5 C 0.142 3.858 6 H 0.078 0.922 7 C 0.072 3.928 8 N -0.679 5.679 9 C 0.079 3.921 10 C -0.047 4.047 11 C -0.107 4.107 12 C -0.122 4.122 13 C -0.003 4.003 14 C -0.502 4.502 15 H 0.045 0.955 16 C 0.001 3.999 17 N -0.955 5.955 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.251 1.251 22 C -0.120 4.120 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.120 4.120 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.085 0.915 37 H 0.347 0.653 38 H 0.021 0.979 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.011 0.989 47 H 0.012 0.988 48 H 0.262 0.738 49 H 0.118 0.882 50 H 0.135 0.865 51 H 0.141 0.859 52 H 0.142 0.858 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 -19.433 -21.397 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.026 3.974 3 C -0.230 4.230 4 O -0.302 6.302 5 C 0.084 3.916 6 H 0.096 0.904 7 C -0.058 4.058 8 N -0.311 5.311 9 C -0.050 4.050 10 C -0.047 4.047 11 C -0.164 4.164 12 C -0.179 4.179 13 C -0.041 4.041 14 C -0.540 4.540 15 H 0.063 0.937 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.175 1.175 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.150 4.150 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.167 0.833 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.029 0.971 47 H 0.031 0.969 48 H 0.071 0.929 49 H 0.136 0.864 50 H 0.153 0.847 51 H 0.159 0.841 52 H 0.160 0.840 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.597 -19.247 -21.473 31.081 hybrid contribution -0.019 -0.201 1.482 1.496 sum -11.616 -19.448 -19.990 30.212 Atomic orbital electron populations 1.21846 0.93050 1.02426 1.02942 1.22167 0.95324 0.92332 0.87597 1.22282 1.01573 0.96428 1.02677 1.87916 1.36271 1.69432 1.36545 1.20873 0.84995 0.88768 0.96943 0.90390 1.21989 0.99012 0.90246 0.94543 1.60491 1.27056 1.14042 1.29541 1.21878 0.98111 0.95743 0.89270 1.20330 0.95546 0.93971 0.94869 1.21496 0.98612 0.98626 0.97708 1.21670 0.95933 1.00157 1.00184 1.19598 0.95263 0.95109 0.94138 1.21420 1.34426 0.92722 1.05440 0.93689 1.25913 0.96570 0.97689 0.99306 1.70065 1.44859 1.20575 1.24157 0.85804 0.79490 0.80546 0.77656 1.19524 1.21448 1.17468 1.20421 0.96598 0.96641 0.98455 1.21070 0.97398 0.94550 0.99494 1.21425 1.00275 0.95143 0.98135 1.21494 0.94684 1.00799 0.97249 1.21426 0.98339 0.94356 1.00405 1.21252 0.99199 0.96176 0.97176 0.92419 0.89837 0.92445 0.92198 0.90557 0.92606 0.92714 0.95495 0.89642 0.83297 0.96038 0.91370 0.91558 0.95332 0.94205 0.94076 0.94397 0.91842 0.97094 0.96939 0.92906 0.86395 0.84679 0.84074 0.84045 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.56 71.98 0.69 -1.52 16 2 C 0.08 1.46 3.12 30.60 0.10 1.56 16 3 C -0.17 -3.05 9.52 71.98 0.69 -2.36 16 4 O -0.38 -8.15 8.13 -148.98 -1.21 -9.36 16 5 C 0.14 2.89 2.38 29.85 0.07 2.96 16 6 H 0.08 1.55 7.53 -2.39 -0.02 1.53 16 7 C 0.07 1.66 5.40 86.30 0.47 2.12 16 8 N -0.68 -18.18 5.71 -513.89 -2.94 -21.12 16 9 C 0.08 2.51 4.65 86.30 0.40 2.91 16 10 C -0.05 -1.80 0.60 -52.18 -0.03 -1.83 16 11 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 12 C -0.12 -4.57 7.89 71.98 0.57 -4.01 16 13 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 14 C -0.50 -28.56 8.20 25.60 0.21 -28.35 16 15 H 0.04 2.80 5.92 -2.91 -0.02 2.78 16 16 C 0.00 0.05 5.47 84.65 0.46 0.51 16 17 N -0.95 -60.59 13.96 21.45 0.30 -60.30 16 18 Si 0.94 45.32 27.47 68.60 1.88 47.20 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 21 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 22 C -0.12 -2.29 4.94 -19.87 -0.10 -2.39 16 23 C -0.11 -2.04 9.35 22.27 0.21 -1.83 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 25 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.12 -2.00 9.68 22.27 0.22 -1.78 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.07 7.96 -2.39 -0.02 1.05 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.35 9.52 6.16 -89.69 -0.55 8.96 16 38 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 41 H 0.03 1.24 6.62 -2.38 -0.02 1.22 16 42 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 44 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 45 H 0.06 2.01 6.57 -2.39 -0.02 1.99 16 46 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 47 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 48 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 49 H 0.12 2.37 7.64 -2.91 -0.02 2.34 16 50 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 51 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 52 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 53 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -65.46 413.40 3.56 -61.90 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.24 Total: 24.24 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 5.29 Total: -42.57 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.64 Total: -81.41 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.21 Total: -9.36 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -65.46 3.56 -61.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602660881.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.045 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds