Wall clock time and date at job start Tue Mar 31 2020 12:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46929 * 2 1 4 4 C 1.52996 * 109.46987 * 239.99872 * 2 1 3 5 5 C 1.50703 * 109.47215 * 64.99767 * 4 2 1 6 6 H 1.07998 * 119.99589 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99943 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99998 * 0.28105 * 7 5 4 9 9 Si 1.86801 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46945 * 60.00112 * 9 7 5 11 11 H 1.48493 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47084 * 300.00692 * 9 7 5 13 13 C 1.52998 * 109.47172 * 119.99777 * 2 1 3 14 14 N 1.46896 * 109.47487 * 293.74447 * 13 2 1 15 15 C 1.46895 * 111.00152 * 287.10731 * 14 13 2 16 16 C 1.53004 * 109.47415 * 170.09755 * 15 14 13 17 17 H 1.08999 * 109.46966 * 54.99816 * 16 15 14 18 18 C 1.52995 * 109.47134 * 294.99913 * 16 15 14 19 19 C 1.50701 * 109.46964 * 174.99800 * 16 15 14 20 20 C 1.38237 * 119.99973 * 59.72991 * 19 16 15 21 21 C 1.38232 * 119.99728 * 179.78808 * 20 19 16 22 22 C 1.38240 * 120.00129 * 0.43564 * 21 20 19 23 23 C 1.38237 * 119.99756 * 359.81911 * 22 21 20 24 24 C 1.38226 * 120.00168 * 359.97349 * 23 22 21 25 25 C 1.46902 * 111.00213 * 163.14821 * 14 13 2 26 26 H 1.09000 * 109.46983 * 166.31713 * 25 14 13 27 27 C 1.52996 * 109.47355 * 286.31879 * 25 14 13 28 28 C 1.53001 * 109.46962 * 46.31846 * 25 14 13 29 29 O 1.42903 * 109.46845 * 66.25987 * 28 25 14 30 30 H 1.08998 * 109.46808 * 294.93866 * 1 2 3 31 31 H 1.09000 * 109.47416 * 54.94344 * 1 2 3 32 32 H 1.08997 * 109.46981 * 174.94482 * 1 2 3 33 33 H 1.09002 * 109.47199 * 305.00101 * 4 2 1 34 34 H 1.08998 * 109.47178 * 185.00171 * 4 2 1 35 35 H 0.96994 * 120.00181 * 359.72221 * 8 7 5 36 36 H 1.09004 * 109.46938 * 53.74610 * 13 2 1 37 37 H 1.09004 * 109.47173 * 173.74125 * 13 2 1 38 38 H 1.09005 * 109.47067 * 290.09670 * 15 14 13 39 39 H 1.08997 * 109.47101 * 50.09706 * 15 14 13 40 40 H 1.09005 * 109.46842 * 59.99749 * 18 16 15 41 41 H 1.09001 * 109.47220 * 179.97438 * 18 16 15 42 42 H 1.08999 * 109.47114 * 299.99812 * 18 16 15 43 43 H 1.07993 * 120.00174 * 359.97438 * 20 19 16 44 44 H 1.08005 * 120.00254 * 180.27576 * 21 20 19 45 45 H 1.08003 * 120.00166 * 179.83476 * 22 21 20 46 46 H 1.08001 * 119.99363 * 179.97438 * 23 22 21 47 47 H 1.08003 * 120.00257 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.47481 * 65.76944 * 27 25 14 49 49 H 1.09000 * 109.47270 * 185.77454 * 27 25 14 50 50 H 1.09008 * 109.47197 * 305.77513 * 27 25 14 51 51 H 1.08995 * 109.46931 * 186.25951 * 28 25 14 52 52 H 1.08998 * 109.47089 * 306.25813 * 28 25 14 53 53 H 0.96704 * 113.99649 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9931 -0.4018 -3.7282 8 7 2.6720 -1.5215 -3.8513 9 14 1.4995 0.5632 -5.2496 10 1 2.0917 1.9236 -5.1866 11 1 1.9944 -0.1369 -6.4620 12 1 0.0195 0.6699 -5.3095 13 6 2.0400 -0.7212 1.2492 14 7 1.6775 0.0529 2.4439 15 6 2.5009 1.2642 2.5562 16 6 1.9379 2.1632 3.6589 17 1 1.8676 1.5978 4.5881 18 6 0.5468 2.6555 3.2549 19 6 2.8510 3.3455 3.8581 20 6 3.0997 4.2112 2.8094 21 6 3.9337 5.2981 2.9934 22 6 4.5262 5.5143 4.2236 23 6 4.2816 4.6456 5.2707 24 6 3.4442 3.5611 5.0879 25 6 1.7831 -0.7698 3.6564 26 1 1.7496 -0.1267 4.5358 27 6 0.6178 -1.7600 3.7039 28 6 3.1056 -1.5390 3.6372 29 8 4.1936 -0.6183 3.7399 30 1 -0.3633 0.4333 0.9318 31 1 -0.3634 0.5903 -0.8412 32 1 -0.3633 -1.0236 -0.0906 33 1 1.6053 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2056 35 1 2.9286 -2.0224 -3.0614 36 1 1.5881 -1.7115 1.3070 37 1 3.1243 -0.8192 1.1950 38 1 3.5256 0.9855 2.8025 39 1 2.4884 1.8013 1.6078 40 1 -0.1135 1.8003 3.1107 41 1 0.1455 3.2956 4.0406 42 1 0.6171 3.2209 2.3257 43 1 2.6400 4.0400 1.8473 44 1 4.1245 5.9770 2.1754 45 1 5.1799 6.3620 4.3666 46 1 4.7449 4.8143 6.2316 47 1 3.2528 2.8827 5.9062 48 1 0.7090 -2.4683 2.8804 49 1 0.6377 -2.2993 4.6510 50 1 -0.3236 -1.2179 3.6142 51 1 3.1351 -2.2317 4.4782 52 1 3.1881 -2.0965 2.7042 53 1 5.0652 -1.0372 3.7343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667808.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:59 Heat of formation + Delta-G solvation = -65.410831 kcal Electronic energy + Delta-G solvation = -28433.414374 eV Core-core repulsion = 24882.179844 eV Total energy + Delta-G solvation = -3551.234531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88335 -39.82703 -37.50385 -36.58348 -35.27602 -34.19678 -31.86535 -31.71058 -30.15695 -28.55074 -27.59886 -26.88094 -26.02651 -24.66682 -24.06315 -23.19847 -21.63871 -21.10841 -19.76768 -18.85150 -18.33519 -17.81979 -17.13645 -16.56388 -16.48074 -15.77176 -15.70939 -15.63306 -15.36324 -15.17836 -14.65363 -14.61104 -14.42183 -14.14922 -13.90897 -13.69311 -13.66056 -13.32448 -13.17162 -13.07463 -12.94637 -12.81641 -12.71623 -12.57102 -12.47486 -12.14519 -12.05919 -11.96640 -11.91781 -11.83123 -11.55740 -11.39002 -11.27024 -11.17563 -10.83044 -10.54451 -10.52034 -9.78343 -9.55590 -9.05627 -8.65580 -6.34176 0.50050 0.53673 1.51017 1.59659 1.78668 2.56835 2.84088 2.98458 3.18460 3.32331 3.75788 3.89545 4.03366 4.04575 4.15944 4.18658 4.23917 4.29206 4.32726 4.39839 4.44021 4.47213 4.55351 4.59140 4.66419 4.67622 4.72037 4.73110 4.79240 4.88205 4.92483 4.96226 5.08076 5.08405 5.11271 5.16869 5.20980 5.27367 5.30617 5.33127 5.37096 5.39434 5.46912 5.52765 5.63404 5.66272 5.67153 5.82082 6.05134 6.16525 6.20197 6.22400 6.30857 6.62869 6.77633 7.46506 8.75010 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.003815 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.603049 B = 7336.893451 C = 8835.664504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.062 4.062 3 H 0.043 0.957 4 C 0.020 3.980 5 C -0.603 4.603 6 H 0.049 0.951 7 C -0.041 4.041 8 N -0.942 5.942 9 Si 1.114 2.886 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.078 3.922 14 N -0.515 5.515 15 C 0.062 3.938 16 C -0.034 4.034 17 H 0.083 0.917 18 C -0.129 4.129 19 C -0.079 4.079 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.125 4.125 25 C 0.074 3.926 26 H 0.095 0.905 27 C -0.135 4.135 28 C 0.042 3.958 29 O -0.579 6.579 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.034 0.966 33 H -0.013 1.013 34 H -0.025 1.025 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.014 0.986 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.132 0.868 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.035 0.965 53 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 7.542 23.158 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.081 4.081 3 H 0.061 0.939 4 C -0.017 4.017 5 C -0.641 4.641 6 H 0.068 0.932 7 C -0.238 4.238 8 N -0.580 5.580 9 Si 0.935 3.065 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.193 1.193 13 C -0.050 4.050 14 N -0.238 5.238 15 C -0.066 4.066 16 C -0.052 4.052 17 H 0.101 0.899 18 C -0.186 4.186 19 C -0.079 4.079 20 C -0.150 4.150 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.034 4.034 26 H 0.113 0.887 27 C -0.193 4.193 28 C -0.037 4.037 29 O -0.387 6.387 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.005 0.995 34 H -0.006 1.006 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.149 0.851 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.054 0.946 53 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.525 8.119 21.494 22.983 hybrid contribution 1.568 -1.073 1.141 2.216 sum 1.043 7.046 22.635 23.729 Atomic orbital electron populations 1.21432 0.94426 1.00086 1.00557 1.20855 0.96776 0.97859 0.92600 0.93870 1.19164 0.93255 0.94856 0.94471 1.22418 1.37922 1.10295 0.93461 0.93236 1.27366 0.94059 0.97267 1.05092 1.70916 1.38298 1.16018 1.32730 0.82983 0.77019 0.74520 0.71968 1.19619 1.20910 1.19349 1.21957 0.96446 0.96757 0.89836 1.62154 1.54111 1.06079 1.01463 1.22244 0.95942 0.90689 0.97698 1.20039 0.94013 0.92535 0.98633 0.89928 1.21682 0.95553 1.01042 1.00303 1.19979 0.97752 0.96195 0.94010 1.21145 0.99459 0.95705 0.98738 1.21387 0.97338 0.97705 0.98394 1.21429 1.00313 1.00384 0.92992 1.21436 0.98181 0.94637 0.99902 1.21265 0.97682 0.98504 0.96809 1.21988 0.92669 0.95016 0.93765 0.88707 1.21724 0.97436 0.98044 1.02100 1.23067 0.87962 0.92498 1.00163 1.86506 1.17943 1.37155 1.97065 0.90997 0.94974 0.94661 0.99511 1.00628 0.93742 0.91265 0.96820 0.92749 0.93509 0.91464 0.92614 0.94084 0.87261 0.85160 0.84104 0.83885 0.85053 0.93542 0.90163 0.91208 0.91574 0.94647 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 8.87 71.98 0.64 -3.60 16 2 C -0.06 -2.64 2.37 -10.79 -0.03 -2.67 16 3 H 0.04 1.95 6.47 -2.39 -0.02 1.93 16 4 C 0.02 1.08 3.76 29.85 0.11 1.19 16 5 C -0.60 -35.31 8.47 25.60 0.22 -35.10 16 6 H 0.05 2.84 7.06 -2.91 -0.02 2.82 16 7 C -0.04 -2.45 5.46 84.65 0.46 -1.99 16 8 N -0.94 -60.02 13.65 21.45 0.29 -59.73 16 9 Si 1.11 51.77 29.90 68.60 2.05 53.83 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.08 2.73 2.84 86.30 0.25 2.98 16 14 N -0.52 -14.56 3.23 -870.99 -2.81 -17.38 16 15 C 0.06 1.81 3.78 86.31 0.33 2.14 16 16 C -0.03 -0.81 2.51 -11.54 -0.03 -0.84 16 17 H 0.08 1.84 5.82 -2.39 -0.01 1.83 16 18 C -0.13 -3.07 8.90 71.98 0.64 -2.43 16 19 C -0.08 -1.93 4.78 -19.86 -0.09 -2.02 16 20 C -0.13 -3.42 8.76 22.27 0.20 -3.22 16 21 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 22 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 23 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 24 C -0.12 -2.63 9.67 22.27 0.22 -2.42 16 25 C 0.07 1.67 2.59 44.91 0.12 1.79 16 26 H 0.10 2.01 5.84 -2.39 -0.01 2.00 16 27 C -0.14 -2.64 9.19 71.98 0.66 -1.98 16 28 C 0.04 0.92 5.91 71.98 0.43 1.34 16 29 O -0.58 -13.33 10.83 -148.98 -1.61 -14.94 16 30 H 0.07 2.44 7.66 -2.39 -0.02 2.42 16 31 H 0.03 1.35 7.10 -2.39 -0.02 1.34 16 32 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 33 H -0.01 -0.76 8.00 -2.39 -0.02 -0.78 16 34 H -0.02 -1.43 8.01 -2.39 -0.02 -1.45 16 35 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 36 H 0.07 2.37 6.28 -2.38 -0.01 2.36 16 37 H 0.01 0.52 7.12 -2.38 -0.02 0.50 16 38 H 0.05 1.74 5.29 -2.38 -0.01 1.72 16 39 H 0.05 1.62 5.79 -2.39 -0.01 1.60 16 40 H 0.07 1.65 7.75 -2.38 -0.02 1.63 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.04 1.07 7.41 -2.39 -0.02 1.05 16 43 H 0.11 3.01 7.16 -2.91 -0.02 2.99 16 44 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 46 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.13 2.31 7.95 -2.91 -0.02 2.29 16 48 H 0.05 1.01 6.82 -2.39 -0.02 1.00 16 49 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.04 0.89 6.17 -2.39 -0.01 0.88 16 53 H 0.39 6.09 9.12 -74.05 -0.68 5.42 16 Total: -1.00 -69.82 401.85 2.99 -66.83 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.30 Total: 25.34 kcal Atomic # 6 Polarization: -58.72 SS G_CDS: 4.78 Total: -53.95 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -2.52 Total: -77.11 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.61 Total: -14.94 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.83 kcal Total: -69.82 2.99 -66.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667808.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.417 kcal (2) G-P(sol) polarization free energy of solvation -69.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds