Wall clock time and date at job start Tue Mar 31 2020 12:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47295 * 2 1 4 4 C 1.53003 * 109.46880 * 119.99723 * 2 1 3 5 5 N 1.46908 * 109.46895 * 294.42174 * 4 2 1 6 6 C 1.46901 * 110.99811 * 208.26453 * 5 4 2 7 7 C 1.53002 * 109.47011 * 65.53839 * 6 5 4 8 8 H 1.09001 * 109.47105 * 299.10667 * 7 6 5 9 9 C 1.53005 * 109.46984 * 59.09923 * 7 6 5 10 10 C 1.52996 * 109.47116 * 179.09924 * 7 6 5 11 11 C 1.50712 * 109.46913 * 174.99894 * 10 7 6 12 12 H 1.07992 * 119.99749 * 0.02562 * 11 10 7 13 13 C 1.37872 * 119.99595 * 180.02562 * 11 10 7 14 14 N 1.31519 * 120.00656 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47267 * 59.99409 * 15 13 11 17 17 H 1.48501 * 109.47301 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46842 * 299.99723 * 15 13 11 19 19 C 1.46901 * 110.99693 * 84.31634 * 5 4 2 20 20 H 1.09002 * 109.47084 * 297.05487 * 19 5 4 21 21 C 1.53001 * 109.47132 * 57.05298 * 19 5 4 22 22 C 1.52996 * 109.46927 * 177.05580 * 19 5 4 23 23 O 1.42902 * 109.47605 * 57.30813 * 22 19 5 24 24 C 1.50697 * 109.47569 * 239.99888 * 2 1 3 25 25 C 1.38233 * 120.00490 * 120.00261 * 24 2 1 26 26 C 1.38226 * 120.00376 * 180.02562 * 25 24 2 27 27 C 1.38236 * 119.99921 * 359.97279 * 26 25 24 28 28 C 1.38239 * 120.00010 * 0.02567 * 27 26 25 29 29 C 1.38230 * 119.99704 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46986 * 78.25236 * 1 2 3 31 31 H 1.08994 * 109.47445 * 198.24873 * 1 2 3 32 32 H 1.09004 * 109.47543 * 318.25473 * 1 2 3 33 33 H 1.09001 * 109.47309 * 54.41875 * 4 2 1 34 34 H 1.09001 * 109.47258 * 174.42584 * 4 2 1 35 35 H 1.09001 * 109.47197 * 185.53528 * 6 5 4 36 36 H 1.08994 * 109.47142 * 305.54069 * 6 5 4 37 37 H 1.08991 * 109.47136 * 305.05030 * 9 7 6 38 38 H 1.09002 * 109.46485 * 65.05497 * 9 7 6 39 39 H 1.09000 * 109.47064 * 185.04916 * 9 7 6 40 40 H 1.08992 * 109.47146 * 294.99960 * 10 7 6 41 41 H 1.09002 * 109.46773 * 55.00677 * 10 7 6 42 42 H 0.96996 * 120.00444 * 180.02562 * 14 13 11 43 43 H 1.08995 * 109.47219 * 39.25109 * 21 19 5 44 44 H 1.09005 * 109.46837 * 159.24744 * 21 19 5 45 45 H 1.08997 * 109.47013 * 279.24443 * 21 19 5 46 46 H 1.08997 * 109.47409 * 177.31158 * 22 19 5 47 47 H 1.09007 * 109.47121 * 297.30920 * 22 19 5 48 48 H 0.96695 * 114.00483 * 180.02562 * 23 22 19 49 49 H 1.08002 * 119.99701 * 359.97207 * 25 24 2 50 50 H 1.07993 * 120.00367 * 179.69868 * 26 25 24 51 51 H 1.08007 * 120.00436 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.00090 * 180.02562 * 28 27 26 53 53 H 1.08008 * 119.99744 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6632 0.0448 2.4449 6 6 2.6222 -0.1762 3.5355 7 6 3.9856 0.3940 3.1391 8 1 4.3470 -0.1161 2.2462 9 6 3.8483 1.8904 2.8512 10 6 4.9786 0.1838 4.2839 11 6 6.3496 0.6334 3.8484 12 1 6.4976 1.0298 2.8548 13 6 7.4148 0.5387 4.7186 14 7 7.2345 0.0565 5.9288 15 14 9.1140 1.0966 4.1792 16 1 9.0712 2.5368 3.8198 17 1 10.0779 0.8925 5.2902 18 1 9.5435 0.3044 2.9987 19 6 0.2963 -0.2835 2.8714 20 1 -0.4070 0.0035 2.0896 21 6 0.1892 -1.7884 3.1263 22 6 -0.0330 0.4764 4.1578 23 8 0.1279 1.8791 3.9369 24 6 2.0324 -0.7104 -1.2304 25 6 2.8272 -0.0387 -2.1403 26 6 3.2876 -0.6902 -3.2691 27 6 2.9537 -2.0136 -3.4879 28 6 2.1588 -2.6854 -2.5779 29 6 1.6985 -2.0339 -1.4491 30 1 -0.3633 0.2092 -1.0062 31 1 -0.3634 -0.9759 0.3218 32 1 -0.3634 0.7668 0.6842 33 1 1.5972 -1.7160 1.3008 34 1 3.1253 -0.8085 1.2009 35 1 2.2681 0.3228 4.4375 36 1 2.7168 -1.2454 3.7251 37 1 3.0757 2.0462 2.0984 38 1 3.5735 2.4129 3.7676 39 1 4.7981 2.2782 2.4828 40 1 4.6634 0.7659 5.1498 41 1 5.0099 -0.8732 4.5482 42 1 7.9839 -0.0098 6.5411 43 1 1.1006 -2.1409 3.6090 44 1 -0.6651 -1.9873 3.7735 45 1 0.0555 -2.3089 2.1780 46 1 -1.0631 0.2701 4.4481 47 1 0.6399 0.1542 4.9525 48 1 -0.0643 2.4239 4.7123 49 1 3.0877 0.9954 -1.9696 50 1 3.9045 -0.1640 -3.9824 51 1 3.3130 -2.5227 -4.3701 52 1 1.8983 -3.7196 -2.7486 53 1 1.0778 -2.5589 -0.7379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667809.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:03 Heat of formation + Delta-G solvation = -50.539364 kcal Electronic energy + Delta-G solvation = -28369.542334 eV Core-core repulsion = 24818.952678 eV Total energy + Delta-G solvation = -3550.589655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.90468 -39.77185 -37.33715 -36.63043 -35.05066 -34.15421 -31.73462 -31.51075 -30.30844 -28.77366 -27.79881 -26.96448 -26.11434 -24.77375 -23.80647 -23.19369 -21.22443 -20.97187 -19.81639 -18.47485 -18.08248 -17.73350 -17.21641 -16.64838 -16.37875 -16.12075 -15.99014 -15.64740 -15.03830 -14.92639 -14.54879 -14.41334 -14.33110 -14.08810 -14.00503 -13.74600 -13.70350 -13.36714 -13.18713 -13.06689 -13.00023 -12.83406 -12.75960 -12.59356 -12.34488 -12.16755 -12.06631 -12.00174 -11.84149 -11.80508 -11.52883 -11.23494 -11.12816 -10.95987 -10.84637 -10.59634 -10.51936 -9.76214 -9.54048 -8.97687 -8.17067 -6.25851 0.52134 0.56098 1.38633 1.41505 1.49146 2.41711 2.88202 3.03947 3.16020 3.47829 3.88542 3.93677 4.05175 4.06569 4.19768 4.21503 4.27260 4.31068 4.33745 4.43479 4.50494 4.56073 4.59815 4.62031 4.64738 4.67639 4.71563 4.77212 4.83898 4.92218 4.97641 4.99244 5.02402 5.08095 5.13904 5.20705 5.21814 5.28779 5.34280 5.36989 5.48163 5.51403 5.53978 5.60393 5.65847 5.67805 5.82433 5.84978 5.90360 6.19190 6.22970 6.33671 6.39679 6.89160 7.04782 7.42034 8.94785 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.004242 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.584241 B = 6598.607583 C = 8846.804277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 H 0.069 0.931 4 C 0.058 3.942 5 N -0.513 5.513 6 C 0.073 3.927 7 C -0.069 4.069 8 H 0.045 0.955 9 C -0.101 4.101 10 C 0.037 3.963 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.958 3.042 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.062 3.938 20 H 0.112 0.888 21 C -0.183 4.183 22 C 0.079 3.921 23 O -0.574 6.574 24 C -0.081 4.081 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.127 4.127 29 C -0.125 4.125 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.029 0.971 40 H -0.011 1.011 41 H -0.017 1.017 42 H 0.262 0.738 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.386 0.614 49 H 0.121 0.879 50 H 0.135 0.865 51 H 0.140 0.860 52 H 0.140 0.860 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 -3.418 -13.904 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.055 4.055 3 H 0.088 0.912 4 C -0.069 4.069 5 N -0.236 5.236 6 C -0.054 4.054 7 C -0.088 4.088 8 H 0.064 0.936 9 C -0.159 4.159 10 C 0.000 4.000 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.046 4.046 20 H 0.130 0.870 21 C -0.242 4.242 22 C 0.001 3.999 23 O -0.380 6.380 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.145 4.145 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.007 0.993 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.234 0.766 49 H 0.139 0.861 50 H 0.153 0.847 51 H 0.157 0.843 52 H 0.157 0.843 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.165 -3.156 -14.452 23.427 hybrid contribution 1.225 -0.496 1.158 1.757 sum -16.940 -3.652 -13.294 21.842 Atomic orbital electron populations 1.21944 0.93364 1.02153 1.01589 1.19986 0.96699 0.98675 0.90162 0.91214 1.22262 0.99706 0.95181 0.89781 1.62073 1.01191 1.56047 1.04294 1.22017 0.92133 0.96913 0.94383 1.21014 0.93401 0.96854 0.97547 0.93649 1.21348 0.99493 0.94797 1.00227 1.18973 0.93603 0.94026 0.93440 1.21572 0.94525 1.41107 0.99389 0.92579 1.25901 1.03249 0.95529 0.94980 1.70087 1.32676 1.47432 1.07307 0.85615 0.79072 0.79171 0.77902 1.19289 1.20768 1.19415 1.22284 0.91360 0.93058 0.97928 0.87003 1.22393 1.02498 0.96481 1.02819 1.22368 0.99450 0.81856 0.96274 1.86570 1.92889 1.17200 1.41329 1.20010 0.97432 0.94732 0.95977 1.21303 0.98328 1.00506 0.95098 1.21400 1.00000 0.95533 0.97638 1.21438 0.98741 0.94842 1.00293 1.21435 0.97909 1.00733 0.94379 1.21170 1.00784 0.94171 0.98156 0.92679 0.91893 0.91530 0.92994 0.93083 0.91351 0.96470 0.91622 0.94999 0.95222 0.99255 0.99903 0.92940 0.93754 0.90277 0.91007 0.91371 0.94816 0.76591 0.86116 0.84715 0.84251 0.84266 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.32 71.98 0.53 -2.09 16 2 C -0.04 -0.87 2.77 -11.54 -0.03 -0.90 16 3 H 0.07 1.91 7.88 -2.39 -0.02 1.90 16 4 C 0.06 1.60 4.06 86.30 0.35 1.96 16 5 N -0.51 -14.79 3.34 -870.95 -2.91 -17.71 16 6 C 0.07 2.62 3.64 86.30 0.31 2.94 16 7 C -0.07 -3.01 2.22 -10.79 -0.02 -3.03 16 8 H 0.05 2.03 6.25 -2.39 -0.01 2.02 16 9 C -0.10 -4.19 8.83 71.98 0.64 -3.56 16 10 C 0.04 2.02 4.45 29.85 0.13 2.16 16 11 C -0.53 -30.85 8.47 25.60 0.22 -30.63 16 12 H 0.06 3.19 7.06 -2.91 -0.02 3.17 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 15 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 C 0.06 1.41 2.29 44.91 0.10 1.51 16 20 H 0.11 2.34 4.22 -2.39 -0.01 2.33 16 21 C -0.18 -3.64 8.32 71.98 0.60 -3.04 16 22 C 0.08 1.74 5.75 71.98 0.41 2.15 16 23 O -0.57 -14.18 13.47 -148.98 -2.01 -16.19 16 24 C -0.08 -1.93 4.69 -19.87 -0.09 -2.02 16 25 C -0.13 -3.21 9.67 22.27 0.22 -2.99 16 26 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 27 C -0.14 -2.58 10.05 22.27 0.22 -2.36 16 28 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 29 C -0.12 -2.66 8.88 22.27 0.20 -2.46 16 30 H 0.05 1.02 8.00 -2.39 -0.02 1.01 16 31 H 0.06 1.07 7.19 -2.39 -0.02 1.06 16 32 H 0.07 1.38 6.36 -2.38 -0.02 1.36 16 33 H 0.05 1.29 5.10 -2.39 -0.01 1.27 16 34 H 0.05 1.71 5.79 -2.39 -0.01 1.69 16 35 H 0.07 2.52 5.72 -2.39 -0.01 2.50 16 36 H 0.02 0.64 6.57 -2.39 -0.02 0.62 16 37 H 0.06 2.46 7.42 -2.39 -0.02 2.45 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.03 1.28 7.10 -2.39 -0.02 1.27 16 40 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.04 1.07 6.13 -2.39 -0.01 1.06 16 44 H 0.08 1.25 7.97 -2.38 -0.02 1.23 16 45 H 0.07 1.26 6.77 -2.39 -0.02 1.24 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.03 0.84 6.28 -2.38 -0.01 0.82 16 48 H 0.39 6.45 9.12 -74.06 -0.68 5.77 16 49 H 0.12 2.78 7.95 -2.91 -0.02 2.76 16 50 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 51 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 52 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 53 H 0.13 2.35 7.61 -2.91 -0.02 2.33 16 Total: -1.00 -69.22 399.46 2.29 -66.93 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.21 Total: 23.67 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 4.69 Total: -46.56 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.63 Total: -75.44 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -2.01 Total: -16.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.22 2.29 -66.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667809.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.387 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds