Wall clock time and date at job start Tue Mar 31 2020 12:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 H 1.09001 * 109.47385 * 305.88687 * 3 2 1 5 5 N 1.46897 * 109.47179 * 65.89220 * 3 2 1 6 6 C 1.46900 * 110.99865 * 232.32279 * 5 3 2 7 7 C 1.50698 * 109.47115 * 184.97408 * 6 5 3 8 8 C 1.38283 * 119.97487 * 269.72715 * 7 6 5 9 9 C 1.38245 * 120.11278 * 179.72770 * 8 7 6 10 10 C 1.38166 * 120.05769 * 0.54175 * 9 8 7 11 11 C 1.38707 * 119.94143 * 359.73243 * 10 9 8 12 12 O 1.35902 * 120.05814 * 179.97438 * 11 10 9 13 13 C 1.42898 * 116.99621 * 0.02798 * 12 11 10 14 14 C 1.53002 * 109.47287 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47286 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99840 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00139 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99996 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47472 * 89.99571 * 19 17 15 21 21 H 1.48508 * 109.46996 * 209.99747 * 19 17 15 22 22 H 1.48504 * 109.46653 * 329.99480 * 19 17 15 23 23 C 1.38130 * 119.97342 * 89.99752 * 7 6 5 24 24 C 1.53002 * 109.46968 * 185.89204 * 3 2 1 25 25 C 1.53005 * 109.46719 * 305.08336 * 24 3 2 26 26 C 1.52994 * 109.47144 * 65.08098 * 24 3 2 27 27 C 1.52999 * 109.47084 * 185.08500 * 24 3 2 28 28 H 1.09000 * 109.47141 * 174.91629 * 1 2 3 29 29 H 1.09003 * 109.47335 * 294.92017 * 1 2 3 30 30 H 1.09001 * 109.47220 * 54.91729 * 1 2 3 31 31 H 1.08996 * 109.46648 * 240.00115 * 2 1 3 32 32 H 1.09001 * 109.46723 * 119.99741 * 2 1 3 33 33 H 1.00898 * 111.00321 * 356.27074 * 5 3 2 34 34 H 1.08995 * 109.47539 * 64.97599 * 6 5 3 35 35 H 1.09007 * 109.47156 * 304.97341 * 6 5 3 36 36 H 1.08004 * 119.94530 * 359.97205 * 8 7 6 37 37 H 1.08002 * 119.97444 * 180.25099 * 9 8 7 38 38 H 1.07995 * 120.02722 * 179.74756 * 10 9 8 39 39 H 1.09004 * 109.46734 * 299.99271 * 13 12 11 40 40 H 1.08992 * 109.47885 * 59.99299 * 13 12 11 41 41 H 1.08997 * 109.46695 * 299.99758 * 14 13 12 42 42 H 1.09006 * 109.47059 * 59.99013 * 14 13 12 43 43 H 0.97003 * 119.99688 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.02629 * 359.97438 * 23 7 6 45 45 H 1.08995 * 109.47305 * 60.00010 * 25 24 3 46 46 H 1.09006 * 109.46917 * 180.02562 * 25 24 3 47 47 H 1.08994 * 109.47061 * 299.99817 * 25 24 3 48 48 H 1.09000 * 109.47064 * 60.00111 * 26 24 3 49 49 H 1.09006 * 109.46879 * 180.02562 * 26 24 3 50 50 H 1.09001 * 109.47625 * 300.00046 * 26 24 3 51 51 H 1.09000 * 109.46986 * 55.13504 * 27 24 3 52 52 H 1.09005 * 109.47026 * 175.12931 * 27 24 3 53 53 H 1.08994 * 109.47000 * 295.13010 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8326 5 7 1.6698 2.0927 1.2642 6 6 0.9741 3.3630 1.0188 7 6 0.7194 4.0580 2.3314 8 6 -0.4547 3.8209 3.0223 9 6 -0.6888 4.4526 4.2295 10 6 0.2454 5.3314 4.7433 11 6 1.4215 5.5753 4.0495 12 8 2.3418 6.4396 4.5525 13 6 2.0330 7.0616 5.8014 14 6 3.1782 7.9928 6.2043 15 6 2.8523 8.6492 7.5211 16 1 1.9213 8.4250 8.0204 17 6 3.7427 9.5360 8.0883 18 7 4.8767 9.8086 7.4804 19 14 3.3391 10.3492 9.7209 20 1 3.8512 9.5085 10.8327 21 1 3.9780 11.6885 9.7781 22 1 1.8671 10.4970 9.8495 23 6 1.6566 4.9357 2.8408 24 6 3.5628 1.4451 -0.1481 25 6 4.1832 0.5769 0.9484 26 6 3.9428 0.8833 -1.5195 27 6 4.0851 2.8775 -0.0211 28 1 -0.3633 -1.0236 -0.0911 29 1 -0.3634 0.4330 0.9320 30 1 -0.3634 0.5907 -0.8410 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.1100 1.4786 1.8364 34 1 0.0243 3.1670 0.5213 35 1 1.5919 3.9991 0.3847 36 1 -1.1885 3.1380 2.6201 37 1 -1.6048 4.2627 4.7692 38 1 0.0602 5.8277 5.6844 39 1 1.1132 7.6380 5.7025 40 1 1.9016 6.2960 6.5660 41 1 4.0977 7.4160 6.3032 42 1 3.3101 8.7584 5.4397 43 1 5.5033 10.4323 7.8797 44 1 2.5718 5.1236 2.2989 45 1 3.8111 -0.4436 0.8580 46 1 5.2682 0.5790 0.8433 47 1 3.9125 0.9771 1.9254 48 1 3.5008 1.5018 -2.3006 49 1 5.0277 0.8847 -1.6248 50 1 3.5707 -0.1372 -1.6100 51 1 3.7411 3.3077 0.9195 52 1 5.1750 2.8698 -0.0399 53 1 3.7116 3.4754 -0.8523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609239886.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:12 Heat of formation + Delta-G solvation = -47.362220 kcal Electronic energy + Delta-G solvation = -26836.863161 eV Core-core repulsion = 23286.411277 eV Total energy + Delta-G solvation = -3550.451884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.91293 -39.22249 -37.29184 -34.70394 -33.37588 -32.98874 -30.89506 -30.35673 -29.10321 -27.42338 -27.32601 -26.43910 -25.08352 -24.16357 -22.31589 -21.84146 -21.58364 -20.14845 -18.67231 -17.53819 -16.31886 -16.12582 -15.77701 -15.60160 -15.37193 -15.26338 -15.19889 -14.50980 -14.37933 -14.08784 -13.74525 -13.62278 -13.20412 -12.96596 -12.82764 -12.63918 -12.46391 -12.30909 -12.26118 -12.10325 -11.96889 -11.71258 -11.62521 -11.39328 -11.32390 -11.23924 -11.11471 -10.87160 -10.80597 -10.76212 -10.58394 -10.50690 -10.32351 -9.83983 -9.64421 -9.28804 -8.71413 -8.47578 -8.43526 -7.80984 -6.09338 -4.13932 1.48644 1.71061 3.28010 3.33867 3.36699 3.78257 3.88234 4.22770 4.40162 4.41777 4.56436 4.75037 4.84900 4.91911 4.96528 5.01438 5.04981 5.16580 5.26996 5.27339 5.31296 5.31612 5.43737 5.49747 5.50199 5.55147 5.59499 5.63374 5.68070 5.73682 5.79411 5.81649 5.87434 5.91089 5.97358 6.01586 6.05548 6.08974 6.16429 6.22423 6.33706 6.44455 6.57931 6.60305 6.71425 6.76185 6.86586 7.03540 7.25682 7.52538 7.65766 7.83054 8.09268 8.25224 8.91668 9.50266 11.02224 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002247 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.738251 B =12459.962882 C =13524.706035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C 0.098 3.902 4 H 0.057 0.943 5 N -0.674 5.674 6 C 0.103 3.897 7 C -0.048 4.048 8 C -0.167 4.167 9 C -0.081 4.081 10 C -0.212 4.212 11 C 0.145 3.855 12 O -0.316 6.316 13 C 0.066 3.934 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.139 4.139 24 C -0.055 4.055 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.127 0.873 45 H 0.048 0.952 46 H 0.046 0.954 47 H 0.068 0.932 48 H 0.050 0.950 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.074 0.926 52 H 0.047 0.953 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 -20.403 -17.666 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C -0.012 4.012 4 H 0.075 0.925 5 N -0.305 5.305 6 C -0.026 4.026 7 C -0.048 4.048 8 C -0.186 4.186 9 C -0.099 4.099 10 C -0.231 4.231 11 C 0.098 3.902 12 O -0.229 6.229 13 C -0.008 4.008 14 C -0.012 4.012 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.158 4.158 24 C -0.056 4.056 25 C -0.194 4.194 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.145 0.855 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.093 0.907 52 H 0.066 0.934 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.632 -19.921 -17.640 27.681 hybrid contribution -1.219 0.211 0.830 1.490 sum -8.851 -19.710 -16.810 27.375 Atomic orbital electron populations 1.21842 0.96059 1.01821 1.01696 1.22077 0.95555 0.97296 1.03119 1.21608 0.95034 0.93266 0.91273 0.92494 1.60439 1.48015 1.05558 1.16522 1.20942 0.96781 0.91180 0.93678 1.19389 0.93570 0.96010 0.95855 1.20750 0.97909 1.03291 0.96639 1.20830 0.98261 0.95476 0.95318 1.21375 0.95487 1.03818 1.02416 1.19208 0.88522 0.89743 0.92760 1.86176 1.42514 1.54632 1.39544 1.23314 1.01580 0.95282 0.80659 1.19122 0.92267 0.93306 0.96494 1.20969 1.04624 1.25715 1.05119 0.92391 1.24994 0.94910 0.96479 0.97836 1.69981 1.08999 1.34916 1.38844 0.86489 0.78569 0.78769 0.83566 1.20489 1.21048 1.19779 1.20246 1.00669 0.99567 0.95310 1.20504 0.94148 0.96247 0.94690 1.21833 0.99521 0.98601 0.99453 1.21967 1.01324 1.00529 0.96453 1.21835 1.00089 0.95186 1.02539 0.92529 0.92788 0.92880 0.91038 0.90832 0.83825 0.94566 0.90078 0.86944 0.86360 0.85368 0.93208 0.93183 0.95383 0.95416 0.92711 0.85496 0.93310 0.93507 0.91344 0.93040 0.92649 0.92770 0.90703 0.93356 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.72 37.16 0.36 -0.58 16 2 C -0.14 -0.91 4.45 -26.73 -0.12 -1.03 16 3 C 0.10 0.75 1.47 -67.71 -0.10 0.65 16 4 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 5 N -0.67 -6.00 4.79 -107.99 -0.52 -6.52 16 6 C 0.10 0.99 5.07 -4.98 -0.03 0.97 16 7 C -0.05 -0.59 5.43 -104.65 -0.57 -1.16 16 8 C -0.17 -1.99 9.70 -39.56 -0.38 -2.37 16 9 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 10 C -0.21 -3.35 9.04 -39.43 -0.36 -3.71 16 11 C 0.14 2.56 6.69 -39.22 -0.26 2.29 16 12 O -0.32 -6.62 10.14 -19.43 -0.20 -6.82 16 13 C 0.07 1.43 4.68 37.16 0.17 1.60 16 14 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 15 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.14 -2.12 9.64 -39.43 -0.38 -2.50 16 24 C -0.06 -0.45 0.62 -154.51 -0.10 -0.55 16 25 C -0.14 -1.18 7.88 37.16 0.29 -0.89 16 26 C -0.15 -1.03 8.24 37.15 0.31 -0.72 16 27 C -0.14 -1.34 7.75 37.16 0.29 -1.05 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.33 7.05 -51.93 -0.37 -0.03 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.43 6.31 -51.93 -0.33 0.10 16 32 H 0.07 0.50 6.71 -51.93 -0.35 0.15 16 33 H 0.34 2.96 6.97 -39.29 -0.27 2.68 16 34 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 35 H 0.08 0.81 7.39 -51.93 -0.38 0.42 16 36 H 0.11 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 39 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 40 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 45 H 0.05 0.37 6.48 -51.93 -0.34 0.04 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.70 7.75 -51.93 -0.40 0.29 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.34 6.45 -51.93 -0.33 0.01 16 51 H 0.07 0.85 6.88 -51.93 -0.36 0.49 16 52 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 53 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 412.16 15.07 6.21 6.21 Total: -1.00 -29.53 412.16 -10.30 -39.83 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -9.68 Total: 0.28 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -1.83 Total: -23.45 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.22 Total: -32.41 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.20 Total: -6.82 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.53 -10.30 -39.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609239886.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.536 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds