Wall clock time and date at job start Tue Mar 31 2020 12:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 O 1.42895 * 109.47537 * 120.00105 * 2 1 3 5 5 C 1.42895 * 114.00318 * 89.99526 * 4 2 1 6 6 C 1.50698 * 109.47522 * 180.02562 * 5 4 2 7 7 C 1.38260 * 119.99559 * 359.97438 * 6 5 4 8 8 C 1.38212 * 119.99650 * 179.71963 * 7 6 5 9 9 C 1.38255 * 120.00300 * 0.28729 * 8 7 6 10 10 C 1.38216 * 119.99744 * 359.97134 * 9 8 7 11 11 C 1.38208 * 120.00333 * 180.19775 * 6 5 4 12 12 C 1.50698 * 120.00186 * 0.03695 * 11 6 5 13 13 N 1.46897 * 109.46930 * 80.17218 * 12 11 6 14 14 C 1.46908 * 111.00271 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47551 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47183 * 300.00165 * 15 14 13 17 17 C 1.53010 * 109.46995 * 59.99720 * 15 14 13 18 18 C 1.52995 * 109.47405 * 179.97438 * 15 14 13 19 19 C 1.50695 * 109.47085 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00597 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99794 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00239 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99963 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47703 * 89.99865 * 23 21 19 25 25 H 1.48505 * 109.46952 * 209.99521 * 23 21 19 26 26 H 1.48507 * 109.47236 * 329.99435 * 23 21 19 27 27 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46980 * 300.00310 * 1 2 3 29 29 H 1.09009 * 109.46943 * 60.00202 * 1 2 3 30 30 H 1.09003 * 109.47107 * 240.00551 * 2 1 3 31 31 H 1.09000 * 109.46852 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47420 * 299.99826 * 3 2 1 33 33 H 1.08991 * 109.47162 * 60.00304 * 3 2 1 34 34 H 1.09004 * 109.46897 * 60.00586 * 5 4 2 35 35 H 1.08997 * 109.47431 * 300.00843 * 5 4 2 36 36 H 1.08002 * 120.00476 * 0.02562 * 7 6 5 37 37 H 1.07999 * 119.99941 * 180.25946 * 8 7 6 38 38 H 1.08005 * 120.00230 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99715 * 179.97438 * 10 9 8 40 40 H 1.09001 * 109.47640 * 200.17138 * 12 11 6 41 41 H 1.09000 * 109.47091 * 320.17597 * 12 11 6 42 42 H 1.00897 * 111.00432 * 303.95277 * 13 12 11 43 43 H 1.08997 * 109.46519 * 300.00264 * 14 13 12 44 44 H 1.09003 * 109.47086 * 59.99731 * 14 13 12 45 45 H 1.09002 * 109.47482 * 59.99432 * 16 15 14 46 46 H 1.09002 * 109.47322 * 180.02562 * 16 15 14 47 47 H 1.09007 * 109.47095 * 300.00068 * 16 15 14 48 48 H 1.08996 * 109.46799 * 60.00233 * 17 15 14 49 49 H 1.09002 * 109.46854 * 180.02562 * 17 15 14 50 50 H 1.09002 * 109.46905 * 300.00100 * 17 15 14 51 51 H 1.08996 * 109.47275 * 300.00310 * 18 15 14 52 52 H 1.09003 * 109.46987 * 59.99758 * 18 15 14 53 53 H 0.96991 * 120.00412 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0781 0.9886 6 6 2.7004 -2.6834 2.2748 7 6 2.8988 -1.8826 3.3843 8 6 3.3520 -2.4387 4.5657 9 6 3.6128 -3.7946 4.6363 10 6 3.4196 -4.5941 3.5255 11 6 2.9653 -4.0381 2.3441 12 6 2.7547 -4.9099 1.1330 13 7 3.9017 -4.7729 0.2256 14 6 3.7307 -5.6101 -0.9694 15 6 4.9425 -5.4416 -1.8880 16 6 5.0655 -3.9750 -2.3061 17 6 6.2097 -5.8676 -1.1438 18 6 4.7646 -6.3140 -3.1322 19 6 5.9580 -6.1474 -4.0372 20 1 6.7630 -5.4859 -3.7532 21 6 6.0226 -6.8405 -5.2274 22 7 7.0643 -6.6956 -6.0171 23 14 4.6306 -7.9853 -5.7183 24 1 3.6199 -7.2289 -6.5004 25 1 5.1698 -9.0933 -6.5471 26 1 3.9953 -8.5440 -4.4978 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.9320 -2.2467 0.1986 35 1 1.2539 -2.5433 0.7124 36 1 2.6948 -0.8235 3.3294 37 1 3.5030 -1.8139 5.4336 38 1 3.9674 -4.2290 5.5593 39 1 3.6236 -5.6533 3.5805 40 1 2.6610 -5.9499 1.4458 41 1 1.8449 -4.6022 0.6176 42 1 4.0490 -3.8074 -0.0278 43 1 3.6435 -6.6549 -0.6714 44 1 2.8277 -5.3068 -1.4992 45 1 5.1924 -3.3537 -1.4195 46 1 5.9286 -3.8549 -2.9609 47 1 4.1627 -3.6713 -2.8362 48 1 6.1221 -6.9124 -0.8459 49 1 7.0731 -5.7471 -1.7981 50 1 6.3366 -5.2464 -0.2572 51 1 4.6773 -7.3587 -2.8339 52 1 3.8618 -6.0108 -3.6624 53 1 7.1099 -7.1834 -6.8541 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270667.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:06 Heat of formation + Delta-G solvation = -61.414889 kcal Electronic energy + Delta-G solvation = -27471.084857 eV Core-core repulsion = 23920.023604 eV Total energy + Delta-G solvation = -3551.061253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79907 -39.21863 -38.95438 -36.03376 -34.39639 -34.12488 -32.17084 -31.82785 -29.62918 -28.19588 -27.94871 -27.58062 -26.89636 -25.44462 -23.54237 -22.99916 -22.13568 -21.52800 -19.50248 -18.86803 -17.97802 -17.51466 -16.88423 -16.58376 -16.34268 -16.03942 -15.86772 -15.59139 -15.50424 -15.05892 -14.95311 -14.55217 -14.43030 -14.10483 -13.99858 -13.79429 -13.66459 -13.49002 -13.21630 -13.13358 -13.01316 -12.84052 -12.76164 -12.74380 -12.44895 -12.39602 -12.21646 -12.07066 -11.90281 -11.80421 -11.69878 -11.55686 -11.37593 -11.00617 -10.82769 -10.72451 -10.69415 -9.71630 -9.52153 -9.25520 -8.21139 -6.21568 0.40108 0.53515 1.35831 1.38259 1.49117 2.39973 2.59472 2.79106 3.13911 3.43289 3.78627 3.86994 3.99456 4.05289 4.09824 4.11793 4.18566 4.19571 4.27322 4.29850 4.34915 4.36576 4.44666 4.63682 4.66670 4.73006 4.75215 4.76466 4.81105 4.87803 4.91055 4.93657 4.94371 5.01859 5.08077 5.11858 5.17426 5.21108 5.26110 5.31274 5.35998 5.44178 5.51434 5.58052 5.61461 5.66452 5.71534 5.74620 5.81317 6.05940 6.15565 6.26555 6.41343 6.45562 6.85961 7.40875 8.95187 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.003113 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.147257 B = 8991.171737 C =10411.052190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.389 6.389 5 C 0.106 3.894 6 C -0.096 4.096 7 C -0.110 4.110 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.110 4.110 11 C -0.082 4.082 12 C 0.096 3.904 13 N -0.681 5.681 14 C 0.078 3.922 15 C -0.049 4.049 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.002 4.002 19 C -0.504 4.504 20 H 0.043 0.957 21 C 0.000 4.000 22 N -0.955 5.955 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.248 1.248 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.339 0.661 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.046 0.954 48 H 0.039 0.961 49 H 0.027 0.973 50 H 0.062 0.938 51 H 0.014 0.986 52 H 0.013 0.987 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 11.670 20.489 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.309 6.309 5 C 0.030 3.970 6 C -0.097 4.097 7 C -0.127 4.127 8 C -0.145 4.145 9 C -0.142 4.142 10 C -0.129 4.129 11 C -0.083 4.083 12 C -0.032 4.032 13 N -0.313 5.313 14 C -0.051 4.051 15 C -0.049 4.049 16 C -0.181 4.181 17 C -0.165 4.165 18 C -0.040 4.040 19 C -0.542 4.542 20 H 0.061 0.939 21 C -0.195 4.195 22 N -0.597 5.597 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.216 1.216 26 H -0.172 1.172 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.159 0.841 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.081 0.919 51 H 0.033 0.967 52 H 0.031 0.969 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.565 11.240 20.829 27.791 hybrid contribution -0.719 -0.250 -1.633 1.802 sum -15.284 10.991 19.195 26.886 Atomic orbital electron populations 1.22270 0.95109 1.02275 1.03207 1.22289 0.94382 0.94341 0.87577 1.21860 1.01535 0.93748 1.03273 1.87858 1.86887 1.19537 1.36619 1.21209 0.99269 0.81830 0.94674 1.19655 1.01277 0.93268 0.95486 1.21067 0.98853 1.00330 0.92496 1.21441 0.99221 0.95671 0.98173 1.21451 0.99697 0.93977 0.99121 1.21207 0.98531 1.00782 0.92336 1.19571 1.00246 0.92733 0.95719 1.20906 0.91778 0.99662 0.90880 1.60576 1.40826 1.13508 1.16433 1.21923 0.95779 0.97872 0.89479 1.20355 0.95070 0.95520 0.93954 1.21693 1.01052 0.95442 0.99949 1.21502 0.96431 0.99993 0.98621 1.19582 0.95246 0.95436 0.93691 1.21430 1.04802 1.24841 1.03095 0.93883 1.25933 0.98185 0.98681 0.96724 1.70065 1.31931 1.44855 1.12884 0.85793 0.79757 0.78884 0.78992 1.19549 1.21575 1.17156 0.92971 0.91872 0.90226 0.92133 0.92559 0.89659 0.91752 0.92572 0.91779 0.85321 0.84150 0.83943 0.84852 0.89507 0.94033 0.84114 0.91087 0.95108 0.92213 0.94444 0.93472 0.94149 0.95419 0.91902 0.96721 0.96896 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 9.53 71.98 0.69 -1.77 16 2 C 0.07 1.21 3.34 30.60 0.10 1.31 16 3 C -0.15 -2.12 9.56 71.98 0.69 -1.43 16 4 O -0.39 -8.12 8.47 -148.98 -1.26 -9.39 16 5 C 0.11 2.20 4.92 71.24 0.35 2.55 16 6 C -0.10 -2.12 5.88 -19.87 -0.12 -2.24 16 7 C -0.11 -2.30 9.38 22.27 0.21 -2.09 16 8 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 9 C -0.12 -2.20 10.05 22.27 0.22 -1.97 16 10 C -0.11 -2.19 9.67 22.27 0.22 -1.98 16 11 C -0.08 -1.78 5.39 -19.87 -0.11 -1.89 16 12 C 0.10 2.07 5.27 85.56 0.45 2.52 16 13 N -0.68 -17.49 5.70 -517.93 -2.95 -20.44 16 14 C 0.08 2.32 4.65 86.30 0.40 2.72 16 15 C -0.05 -1.81 0.60 -52.18 -0.03 -1.84 16 16 C -0.12 -4.46 7.89 71.98 0.57 -3.89 16 17 C -0.11 -4.13 8.06 71.99 0.58 -3.55 16 18 C 0.00 -0.08 3.11 29.84 0.09 0.02 16 19 C -0.50 -28.24 8.20 25.60 0.21 -28.03 16 20 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 21 C 0.00 0.02 5.47 84.66 0.46 0.48 16 22 N -0.96 -60.17 13.96 21.45 0.30 -59.87 16 23 Si 0.94 44.45 27.47 68.60 1.88 46.34 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 27 H 0.05 0.78 7.87 -2.39 -0.02 0.76 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 1.04 7.79 -2.39 -0.02 1.02 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.20 6.39 -2.38 -0.02 1.19 16 35 H 0.06 1.24 7.29 -2.39 -0.02 1.22 16 36 H 0.13 2.66 7.01 -2.91 -0.02 2.64 16 37 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.13 2.32 8.04 -2.91 -0.02 2.29 16 40 H 0.09 1.77 8.00 -2.39 -0.02 1.75 16 41 H 0.04 0.84 7.06 -2.39 -0.02 0.83 16 42 H 0.34 8.70 4.98 -89.70 -0.45 8.25 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.06 1.82 6.57 -2.39 -0.02 1.81 16 46 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 47 H 0.05 1.59 8.14 -2.38 -0.02 1.58 16 48 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.03 1.21 6.62 -2.39 -0.02 1.19 16 50 H 0.06 2.15 7.60 -2.39 -0.02 2.14 16 51 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 52 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 53 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -65.47 407.59 3.54 -61.93 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.36 Total: 24.58 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 5.21 Total: -43.14 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.65 Total: -80.32 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -1.26 Total: -9.39 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.34 kcal Total: -65.47 3.54 -61.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270667.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.515 kcal (2) G-P(sol) polarization free energy of solvation -65.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds