Wall clock time and date at job start Tue Mar 31 2020 12:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 C 1.52997 * 109.47175 * 240.00121 * 2 1 3 5 5 O 1.42900 * 109.47109 * 119.99815 * 2 1 3 6 6 C 1.35907 * 117.00055 * 62.90205 * 5 2 1 7 7 C 1.38727 * 120.05563 * 175.72241 * 6 5 2 8 8 C 1.38150 * 119.94244 * 180.02562 * 7 6 5 9 9 C 1.38271 * 120.05336 * 0.02625 * 8 7 6 10 10 C 1.50693 * 119.93992 * 179.97438 * 9 8 7 11 11 N 1.46895 * 109.47719 * 89.99746 * 10 9 8 12 12 C 1.46897 * 111.00645 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47655 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47034 * 300.00068 * 13 12 11 15 15 C 1.53006 * 109.47166 * 59.99829 * 13 12 11 16 16 C 1.53001 * 109.47395 * 180.02562 * 13 12 11 17 17 C 1.50701 * 109.46848 * 180.02562 * 16 13 12 18 18 H 1.07995 * 120.00450 * 359.97438 * 17 16 13 19 19 C 1.37877 * 119.99591 * 180.02562 * 17 16 13 20 20 N 1.31518 * 119.99968 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00093 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47263 * 89.99723 * 21 19 17 23 23 H 1.48493 * 109.47167 * 209.99654 * 21 19 17 24 24 H 1.48504 * 109.46698 * 329.99711 * 21 19 17 25 25 C 1.38259 * 120.11253 * 0.24965 * 9 8 7 26 26 C 1.38149 * 120.05519 * 359.45167 * 25 9 8 27 27 H 1.09005 * 109.46879 * 317.84416 * 1 2 3 28 28 H 1.08994 * 109.46974 * 77.84376 * 1 2 3 29 29 H 1.08999 * 109.46722 * 197.84400 * 1 2 3 30 30 H 1.08998 * 109.46811 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47173 * 299.99995 * 3 2 1 32 32 H 1.09004 * 109.47148 * 60.00162 * 3 2 1 33 33 H 1.09005 * 109.46987 * 288.10496 * 4 2 1 34 34 H 1.09001 * 109.47315 * 48.10503 * 4 2 1 35 35 H 1.09000 * 109.47222 * 168.10974 * 4 2 1 36 36 H 1.07996 * 120.02853 * 0.02562 * 7 6 5 37 37 H 1.07992 * 119.97031 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47494 * 329.99470 * 10 9 8 39 39 H 1.09005 * 109.47061 * 210.00217 * 10 9 8 40 40 H 1.00906 * 110.99658 * 56.04312 * 11 10 9 41 41 H 1.09004 * 109.47206 * 300.00441 * 12 11 10 42 42 H 1.09001 * 109.46815 * 59.99849 * 12 11 10 43 43 H 1.09005 * 109.47480 * 59.99973 * 14 13 12 44 44 H 1.09001 * 109.47727 * 179.97438 * 14 13 12 45 45 H 1.09001 * 109.47592 * 299.99809 * 14 13 12 46 46 H 1.09001 * 109.46744 * 59.99763 * 15 13 12 47 47 H 1.08999 * 109.47059 * 180.02562 * 15 13 12 48 48 H 1.09004 * 109.47102 * 300.00420 * 15 13 12 49 49 H 1.08997 * 109.46684 * 299.99667 * 16 13 12 50 50 H 1.08992 * 109.47089 * 59.99837 * 16 13 12 51 51 H 0.97007 * 119.99317 * 180.02562 * 20 19 17 52 52 H 1.08001 * 119.97222 * 179.70646 * 25 9 8 53 53 H 1.08001 * 120.02393 * 180.25144 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.6920 -1.9900 1.2909 7 6 2.1955 -2.7275 2.3525 8 6 1.8749 -4.0656 2.4760 9 6 1.0533 -4.6699 1.5424 10 6 0.7056 -6.1297 1.6793 11 7 -0.5162 -6.2690 2.4827 12 6 -0.8867 -7.6821 2.6371 13 6 -2.1612 -7.7864 3.4770 14 6 -1.9154 -7.1701 4.8556 15 6 -3.2959 -7.0352 2.7776 16 6 -2.5467 -9.2582 3.6383 17 6 -3.8025 -9.3609 4.4651 18 1 -4.2778 -8.4659 4.8386 19 6 -4.3439 -10.5974 4.7457 20 7 -3.7648 -11.6873 4.2914 21 14 -5.9001 -10.7248 5.7712 22 1 -7.0860 -10.6841 4.8784 23 1 -5.8924 -12.0037 6.5257 24 1 -5.9590 -9.5878 6.7246 25 6 0.5548 -3.9383 0.4803 26 6 0.8675 -2.5985 0.3557 27 1 -0.3633 0.7619 0.6898 28 1 -0.3633 0.2164 -1.0046 29 1 -0.3633 -0.9782 0.3149 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.8601 -1.7917 -1.1497 34 1 1.5142 -0.3444 -2.1265 35 1 3.1093 -0.5415 -1.3615 36 1 2.8376 -2.2561 3.0817 37 1 2.2663 -4.6401 3.3025 38 1 1.5253 -6.6539 2.1707 39 1 0.5413 -6.5584 0.6906 40 1 -1.2750 -5.7383 2.0817 41 1 -1.0623 -8.1211 1.6549 42 1 -0.0782 -8.2173 3.1350 43 1 -1.6405 -6.1215 4.7411 44 1 -2.8235 -7.2440 5.4539 45 1 -1.1070 -7.7052 5.3540 46 1 -3.4710 -7.4742 1.7954 47 1 -4.2038 -7.1091 3.3762 48 1 -3.0210 -5.9866 2.6630 49 1 -2.7218 -9.6976 2.6563 50 1 -1.7383 -9.7930 4.1368 51 1 -4.1460 -12.5573 4.4885 52 1 -0.0829 -4.4138 -0.2503 53 1 0.4745 -2.0265 -0.4719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270715.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:08 Heat of formation + Delta-G solvation = -34.568809 kcal Electronic energy + Delta-G solvation = -26870.830183 eV Core-core repulsion = 23320.933063 eV Total energy + Delta-G solvation = -3549.897120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75699 -39.54601 -38.69762 -35.86765 -35.01021 -34.15858 -32.00370 -31.29188 -29.00232 -28.35941 -28.32677 -27.88221 -27.09536 -25.60768 -23.88129 -23.72089 -22.37027 -21.17786 -19.55745 -18.32453 -18.27365 -17.56325 -16.71645 -16.52384 -16.33458 -16.26231 -15.72475 -15.59090 -15.23230 -14.86413 -14.80041 -14.69191 -14.37228 -14.20213 -13.97127 -13.87954 -13.56886 -13.31821 -13.12648 -12.93083 -12.88998 -12.83068 -12.76881 -12.68822 -12.53903 -12.40455 -12.32641 -12.21106 -12.12755 -11.87622 -11.65026 -11.53236 -11.36312 -11.28005 -10.84741 -10.72304 -10.49431 -9.82938 -9.30107 -8.92880 -8.13067 -6.19817 0.44244 0.47320 1.41201 1.41896 1.52614 2.27513 2.44363 2.76697 3.20617 3.50819 3.73206 3.83097 3.92241 3.95216 3.98161 4.01418 4.18733 4.23206 4.35779 4.40393 4.48680 4.52646 4.58856 4.64032 4.72481 4.74403 4.77073 4.82295 4.84365 4.87100 4.90705 4.98124 4.99381 5.09327 5.14555 5.15427 5.22407 5.23247 5.25819 5.29456 5.38464 5.46610 5.53103 5.55294 5.59708 5.66852 5.75933 5.88733 5.89420 5.94163 6.11394 6.38531 6.54785 6.56345 6.95241 7.47202 8.99073 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.028630 B = 0.002040 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.756800 B =13721.327773 C =14003.040136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.099 3.901 3 C -0.136 4.136 4 C -0.200 4.200 5 O -0.325 6.325 6 C 0.122 3.878 7 C -0.168 4.168 8 C -0.066 4.066 9 C -0.122 4.122 10 C 0.103 3.897 11 N -0.678 5.678 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.107 4.107 15 C -0.122 4.122 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.065 0.935 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.084 4.084 26 C -0.218 4.218 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.343 0.657 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.030 0.970 46 H 0.038 0.962 47 H 0.046 0.954 48 H 0.065 0.935 49 H -0.015 1.015 50 H -0.015 1.015 51 H 0.259 0.741 52 H 0.135 0.865 53 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 25.941 -12.255 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.062 3.938 3 C -0.193 4.193 4 C -0.257 4.257 5 O -0.240 6.240 6 C 0.077 3.923 7 C -0.187 4.187 8 C -0.084 4.084 9 C -0.123 4.123 10 C -0.026 4.026 11 N -0.310 5.310 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.164 4.164 15 C -0.180 4.180 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.083 0.917 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.782 3.218 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.102 4.102 26 C -0.236 4.236 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.162 0.838 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.003 0.997 50 H 0.003 0.997 51 H 0.068 0.932 52 H 0.152 0.848 53 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.788 25.928 -11.535 31.126 hybrid contribution -1.131 -1.140 -0.349 1.644 sum 11.657 24.787 -11.884 29.858 Atomic orbital electron populations 1.22881 0.94315 1.03924 1.04414 1.22068 0.94451 0.93644 0.83656 1.21844 1.02019 0.91618 1.03836 1.22915 1.02666 1.02541 0.97560 1.86127 1.73400 1.19874 1.44560 1.19054 0.94642 0.83530 0.95088 1.20588 1.04765 0.94103 0.99249 1.20959 0.96074 0.93558 0.97856 1.19723 1.00322 0.95783 0.96462 1.20805 0.93464 0.92345 0.95941 1.60561 1.06809 1.09844 1.53828 1.21833 0.96803 0.88739 0.97351 1.20487 0.93723 0.95732 0.95561 1.21501 0.99651 0.99795 0.95474 1.21685 0.98217 0.98882 0.99169 1.19006 0.94803 0.91505 0.94449 1.21619 1.09820 0.92233 1.31456 0.91680 1.25934 1.00776 0.95872 0.97700 1.70114 1.41810 0.98148 1.47776 0.85567 0.79784 0.77508 0.78928 1.20047 1.21290 1.18805 1.21094 0.98189 0.93564 0.97361 1.21969 1.03011 0.96424 1.02165 0.91669 0.88978 0.90908 0.91773 0.88358 0.91861 0.90508 0.88959 0.91795 0.84925 0.84854 0.90530 0.94228 0.83775 0.96213 0.92357 0.91611 0.94383 0.95039 0.94302 0.93488 0.91628 0.99676 0.99707 0.93203 0.84759 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 8.11 71.98 0.58 -1.80 16 2 C 0.10 1.34 1.11 -10.79 -0.01 1.33 16 3 C -0.14 -1.36 8.74 71.98 0.63 -0.73 16 4 C -0.20 -2.27 8.08 71.98 0.58 -1.69 16 5 O -0.32 -6.54 9.79 -92.51 -0.91 -7.44 16 6 C 0.12 2.58 6.06 22.50 0.14 2.71 16 7 C -0.17 -3.66 9.99 22.37 0.22 -3.44 16 8 C -0.07 -1.45 9.69 22.26 0.22 -1.23 16 9 C -0.12 -2.69 5.39 -19.85 -0.11 -2.80 16 10 C 0.10 2.43 5.81 85.56 0.50 2.92 16 11 N -0.68 -18.80 5.70 -517.95 -2.95 -21.75 16 12 C 0.08 2.79 4.65 86.30 0.40 3.19 16 13 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 14 C -0.11 -4.14 8.06 71.98 0.58 -3.56 16 15 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -28.60 7.65 25.60 0.20 -28.40 16 18 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 19 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 20 N -0.94 -57.57 13.29 21.45 0.28 -57.29 16 21 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 C -0.08 -1.63 9.69 22.25 0.22 -1.42 16 26 C -0.22 -4.02 5.73 22.37 0.13 -3.89 16 27 H 0.06 0.80 8.01 -2.38 -0.02 0.78 16 28 H 0.09 0.70 7.84 -2.39 -0.02 0.68 16 29 H 0.07 1.07 4.74 -2.39 -0.01 1.06 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.04 4.48 -2.38 -0.01 1.03 16 34 H 0.09 0.65 7.89 -2.39 -0.02 0.63 16 35 H 0.06 0.75 8.09 -2.39 -0.02 0.73 16 36 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.08 1.81 8.08 -2.38 -0.02 1.79 16 39 H 0.04 0.89 8.08 -2.38 -0.02 0.87 16 40 H 0.34 9.05 6.76 -89.69 -0.61 8.44 16 41 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.24 7.60 -2.38 -0.02 2.22 16 44 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 48 H 0.06 1.95 6.57 -2.39 -0.02 1.94 16 49 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 50 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 51 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 52 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 53 H 0.16 2.35 3.60 -2.91 -0.01 2.34 16 Total: -1.00 -65.32 402.83 4.11 -61.21 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.27 Total: 21.04 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 5.39 Total: -42.59 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.67 Total: -79.04 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.91 Total: -7.44 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -65.32 4.11 -61.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270715.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.640 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds