Wall clock time and date at job start Tue Mar 31 2020 12:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46798 * 2 1 4 4 N 1.46909 * 109.46909 * 174.81097 * 3 2 1 5 5 C 1.46897 * 110.99985 * 195.93727 * 4 3 2 6 6 C 1.50697 * 109.47066 * 76.12457 * 5 4 3 7 7 C 1.38268 * 119.94560 * 270.30078 * 6 5 4 8 8 C 1.38150 * 120.05411 * 180.29969 * 7 6 5 9 9 C 1.38731 * 119.94034 * 359.42229 * 8 7 6 10 10 O 1.35901 * 120.05339 * 180.29776 * 9 8 7 11 11 C 1.42896 * 117.00422 * 179.97438 * 10 9 8 12 12 C 1.38730 * 119.89267 * 0.27370 * 9 8 7 13 13 C 1.38139 * 119.94619 * 0.02562 * 12 9 8 14 14 C 1.46903 * 110.99822 * 71.98227 * 4 3 2 15 15 C 1.52992 * 109.47060 * 209.41335 * 14 4 3 16 16 C 1.53003 * 109.47390 * 299.56518 * 15 14 4 17 17 C 1.52994 * 109.47212 * 59.56684 * 15 14 4 18 18 C 1.53001 * 109.47359 * 179.57036 * 15 14 4 19 19 C 1.50698 * 109.47435 * 180.02562 * 18 15 14 20 20 H 1.08000 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.37878 * 120.00211 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00351 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99780 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47158 * 90.00198 * 23 21 19 25 25 H 1.48502 * 109.47166 * 210.00434 * 23 21 19 26 26 H 1.48507 * 109.47035 * 330.00110 * 23 21 19 27 27 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47055 * 300.00081 * 1 2 3 29 29 H 1.09002 * 109.46987 * 60.00450 * 1 2 3 30 30 H 1.08997 * 109.47055 * 239.99919 * 2 1 3 31 31 H 1.09002 * 109.46987 * 119.99550 * 2 1 3 32 32 H 1.08999 * 109.47629 * 54.81108 * 3 2 1 33 33 H 1.09000 * 109.47295 * 294.80665 * 3 2 1 34 34 H 1.08998 * 109.47312 * 316.12626 * 5 4 3 35 35 H 1.08999 * 109.46818 * 196.12524 * 5 4 3 36 36 H 1.07998 * 119.97078 * 0.02562 * 7 6 5 37 37 H 1.07993 * 120.02656 * 179.69120 * 8 7 6 38 38 H 1.08999 * 109.47510 * 300.00615 * 11 10 9 39 39 H 1.09004 * 109.46699 * 60.00125 * 11 10 9 40 40 H 1.09000 * 109.47885 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.02566 * 180.02562 * 12 9 8 42 42 H 1.08002 * 119.97891 * 179.97438 * 13 12 9 43 43 H 1.09001 * 109.47524 * 329.41621 * 14 4 3 44 44 H 1.09007 * 109.46583 * 89.41410 * 14 4 3 45 45 H 1.09004 * 109.46750 * 70.55975 * 16 15 14 46 46 H 1.08994 * 109.47634 * 190.56596 * 16 15 14 47 47 H 1.08996 * 109.47009 * 310.56746 * 16 15 14 48 48 H 1.09001 * 109.47181 * 65.20997 * 17 15 14 49 49 H 1.09006 * 109.47016 * 185.20611 * 17 15 14 50 50 H 1.08992 * 109.47282 * 305.20732 * 17 15 14 51 51 H 1.09008 * 109.46517 * 299.99841 * 18 15 14 52 52 H 1.09002 * 109.47437 * 59.99643 * 18 15 14 53 53 H 0.96998 * 120.00402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1253 5 6 3.9978 2.7745 0.5054 6 6 3.7335 3.0087 1.9705 7 6 2.5423 3.5835 2.3737 8 6 2.3003 3.8049 3.7157 9 6 3.2486 3.4390 4.6598 10 8 3.0104 3.6502 5.9810 11 6 4.0310 3.2481 6.8968 12 6 4.4403 2.8567 4.2532 13 6 4.6802 2.6431 2.9096 14 6 4.1389 0.9818 -1.1159 15 6 5.4723 0.3081 -0.7860 16 6 6.3952 1.3144 -0.0958 17 6 5.2265 -0.8806 0.1453 18 6 6.1288 -0.1833 -2.0777 19 6 7.4419 -0.8475 -1.7527 20 1 7.7751 -0.9122 -0.7274 21 6 8.2180 -1.3725 -2.7642 22 7 9.3641 -1.9516 -2.4807 23 14 7.6413 -1.2611 -4.5375 24 1 8.1435 -0.0017 -5.1432 25 1 8.1650 -2.4214 -5.3022 26 1 6.1568 -1.2717 -4.5769 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6027 1.9825 0.8398 33 1 1.7546 1.9288 -0.9328 34 1 3.4837 3.5348 -0.0825 35 1 5.0696 2.8318 0.3159 36 1 1.8024 3.8636 1.6386 37 1 1.3719 4.2584 4.0297 38 1 4.2060 2.1768 6.7983 39 1 4.9514 3.7884 6.6751 40 1 3.7145 3.4728 7.9153 41 1 5.1799 2.5707 4.9864 42 1 5.6080 2.1902 2.5924 43 1 3.4842 0.2670 -1.6146 44 1 4.3148 1.8334 -1.7733 45 1 6.0211 1.5223 0.9067 46 1 7.4008 0.8993 -0.0297 47 1 6.4210 2.2388 -0.6728 48 1 4.6458 -1.6393 -0.3794 49 1 6.1823 -1.3038 0.4543 50 1 4.6763 -0.5455 1.0245 51 1 5.4713 -0.9003 -2.5694 52 1 6.3040 0.6635 -2.7413 53 1 9.9099 -2.3213 -3.1923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611255663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:35 Heat of formation + Delta-G solvation = -20.750568 kcal Electronic energy + Delta-G solvation = -28077.776329 eV Core-core repulsion = 24528.478413 eV Total energy + Delta-G solvation = -3549.297916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.28522 -38.94293 -37.31100 -35.49356 -33.21598 -32.14390 -31.19741 -30.56400 -27.98491 -27.75731 -26.66207 -26.17633 -25.65722 -23.36426 -22.65612 -22.09868 -20.99721 -20.30920 -18.24796 -17.92441 -16.76179 -16.34285 -15.89313 -15.85345 -15.28925 -15.01880 -14.74077 -14.31054 -14.19020 -13.85721 -13.70585 -13.41067 -13.34249 -13.14929 -12.75130 -12.61281 -12.32600 -12.21180 -12.13765 -11.95662 -11.88425 -11.53953 -11.29469 -11.12855 -11.07282 -10.93073 -10.86041 -10.78673 -10.49792 -10.43675 -10.39652 -10.16860 -9.75539 -9.60147 -9.13812 -9.00836 -8.89158 -8.47575 -8.17016 -7.93773 -5.97987 -3.93611 1.31643 1.40325 3.13439 3.33008 3.40946 3.44435 3.65980 4.30028 4.49996 4.70904 4.80398 4.90988 4.93052 4.94491 5.03070 5.14489 5.23601 5.25211 5.33648 5.35548 5.42174 5.45841 5.52080 5.56012 5.67484 5.73229 5.78779 5.82688 5.92627 5.96122 6.02415 6.05131 6.17211 6.23677 6.25964 6.32707 6.33896 6.39784 6.53992 6.66935 6.68322 6.71391 6.75565 6.86217 7.14323 7.20973 7.23517 7.28906 7.32744 7.41793 7.45610 7.55269 7.88620 8.62671 9.08515 9.65528 11.15188 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003323 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.504037 B = 8423.984272 C = 9668.200970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.052 3.948 4 N -0.524 5.524 5 C 0.075 3.925 6 C -0.099 4.099 7 C -0.078 4.078 8 C -0.154 4.154 9 C 0.118 3.882 10 O -0.322 6.322 11 C 0.028 3.972 12 C -0.206 4.206 13 C -0.059 4.059 14 C 0.060 3.940 15 C -0.040 4.040 16 C -0.137 4.137 17 C -0.115 4.115 18 C -0.006 4.006 19 C -0.504 4.504 20 H 0.078 0.922 21 C 0.064 3.936 22 N -0.906 5.906 23 Si 0.875 3.125 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.267 1.267 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.035 0.965 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.013 0.987 52 H 0.006 0.994 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.641 11.283 12.973 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.076 4.076 4 N -0.247 5.247 5 C -0.052 4.052 6 C -0.099 4.099 7 C -0.097 4.097 8 C -0.173 4.173 9 C 0.073 3.927 10 O -0.236 6.236 11 C -0.067 4.067 12 C -0.225 4.225 13 C -0.077 4.077 14 C -0.067 4.067 15 C -0.041 4.041 16 C -0.194 4.194 17 C -0.173 4.173 18 C -0.043 4.043 19 C -0.542 4.542 20 H 0.096 0.904 21 C -0.136 4.136 22 N -0.546 5.546 23 Si 0.702 3.298 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.192 1.192 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.031 0.969 52 H 0.025 0.975 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.531 10.947 13.343 23.218 hybrid contribution -0.155 0.400 -1.681 1.735 sum -15.686 11.348 11.662 22.601 Atomic orbital electron populations 1.21734 0.96222 1.01465 1.01284 1.21519 0.94602 0.96674 1.02973 1.22223 0.88478 0.97164 0.99729 1.61946 1.04527 1.24167 1.34059 1.21488 1.03008 0.89730 0.90977 1.19728 0.94415 1.00080 0.95710 1.20847 0.96443 0.97830 0.94575 1.20316 0.99531 1.05837 0.91623 1.19008 0.94215 0.96382 0.83055 1.86034 1.44131 1.79431 1.13999 1.23028 0.91124 1.00114 0.92457 1.21240 0.97623 1.06190 0.97460 1.20959 0.99275 0.95934 0.91535 1.22404 0.97011 0.98252 0.89000 1.20322 0.91645 0.94920 0.97198 1.22064 1.01184 0.97688 0.98444 1.21584 1.00868 0.96565 0.98243 1.19650 0.96523 0.95535 0.92639 1.21134 1.01910 1.35595 0.95558 0.90416 1.25014 0.94802 0.95091 0.98694 1.69905 1.12496 1.39548 1.32669 0.86865 0.79558 0.77498 0.85831 1.20551 1.21620 1.19156 0.92773 0.92979 0.93186 0.91908 0.91056 0.91024 0.95523 0.94650 0.87680 0.85936 0.85691 0.92577 0.92684 0.88478 0.85650 0.85185 0.91443 0.95029 0.93395 0.91159 0.94481 0.94515 0.92621 0.93281 0.96882 0.97523 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.43 5.93 -26.73 -0.16 -1.59 16 3 C 0.05 0.63 4.73 -3.82 -0.02 0.61 16 4 N -0.52 -7.21 3.29 -236.07 -0.78 -7.99 16 5 C 0.07 0.96 4.20 -4.98 -0.02 0.94 16 6 C -0.10 -1.21 5.18 -104.60 -0.54 -1.75 16 7 C -0.08 -0.87 8.28 -39.60 -0.33 -1.20 16 8 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 9 C 0.12 1.40 6.69 -39.22 -0.26 1.14 16 10 O -0.32 -3.55 10.50 -19.43 -0.20 -3.76 16 11 C 0.03 0.21 9.81 101.05 0.99 1.20 16 12 C -0.21 -2.39 9.04 -39.44 -0.36 -2.74 16 13 C -0.06 -0.73 9.59 -39.60 -0.38 -1.11 16 14 C 0.06 0.97 3.99 -3.83 -0.02 0.95 16 15 C -0.04 -0.76 0.60 -154.51 -0.09 -0.85 16 16 C -0.14 -2.46 6.72 37.16 0.25 -2.21 16 17 C -0.12 -2.19 8.01 37.15 0.30 -1.89 16 18 C -0.01 -0.13 3.11 -27.88 -0.09 -0.22 16 19 C -0.50 -13.78 8.12 -34.44 -0.28 -14.06 16 20 H 0.08 2.27 5.99 -52.49 -0.31 1.96 16 21 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 22 N -0.91 -27.72 13.96 55.43 0.77 -26.94 16 23 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.82 6.72 -51.93 -0.35 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.81 5.55 -51.93 -0.29 0.53 16 33 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 34 H 0.04 0.43 7.94 -51.93 -0.41 0.01 16 35 H 0.11 1.44 3.97 -51.93 -0.21 1.23 16 36 H 0.12 1.16 7.44 -52.49 -0.39 0.77 16 37 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 38 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 42 H 0.13 1.63 6.15 -52.49 -0.32 1.30 16 43 H 0.07 1.09 6.26 -51.93 -0.33 0.76 16 44 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 45 H 0.05 0.75 4.42 -51.93 -0.23 0.52 16 46 H 0.07 1.46 6.34 -51.93 -0.33 1.13 16 47 H 0.04 0.63 7.20 -51.93 -0.37 0.25 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 1.17 6.80 -51.93 -0.35 0.82 16 50 H 0.05 0.85 7.43 -51.93 -0.39 0.47 16 51 H 0.01 0.31 7.20 -51.92 -0.37 -0.06 16 52 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 53 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -30.28 395.07 -9.17 -39.46 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -9.13 Total: 0.49 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.12 Total: -24.28 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.00 Total: -34.94 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.20 Total: -3.76 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.28 -9.17 -39.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611255663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds