Wall clock time and date at job start Tue Mar 31 2020 12:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46798 * 2 1 4 4 N 1.46909 * 109.46909 * 174.81097 * 3 2 1 5 5 C 1.46897 * 110.99985 * 195.93727 * 4 3 2 6 6 C 1.50697 * 109.47066 * 76.12457 * 5 4 3 7 7 C 1.38268 * 119.94560 * 270.30078 * 6 5 4 8 8 C 1.38150 * 120.05411 * 180.29969 * 7 6 5 9 9 C 1.38731 * 119.94034 * 359.42229 * 8 7 6 10 10 O 1.35901 * 120.05339 * 180.29776 * 9 8 7 11 11 C 1.42896 * 117.00422 * 179.97438 * 10 9 8 12 12 C 1.38730 * 119.89267 * 0.27370 * 9 8 7 13 13 C 1.38139 * 119.94619 * 0.02562 * 12 9 8 14 14 C 1.46903 * 110.99822 * 71.98227 * 4 3 2 15 15 C 1.52992 * 109.47060 * 209.41335 * 14 4 3 16 16 C 1.53003 * 109.47390 * 299.56518 * 15 14 4 17 17 C 1.52994 * 109.47212 * 59.56684 * 15 14 4 18 18 C 1.53001 * 109.47359 * 179.57036 * 15 14 4 19 19 C 1.50698 * 109.47435 * 180.02562 * 18 15 14 20 20 H 1.08000 * 119.99703 * 359.97438 * 19 18 15 21 21 C 1.37878 * 120.00211 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00351 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99780 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47158 * 90.00198 * 23 21 19 25 25 H 1.48502 * 109.47166 * 210.00434 * 23 21 19 26 26 H 1.48507 * 109.47035 * 330.00110 * 23 21 19 27 27 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47055 * 300.00081 * 1 2 3 29 29 H 1.09002 * 109.46987 * 60.00450 * 1 2 3 30 30 H 1.08997 * 109.47055 * 239.99919 * 2 1 3 31 31 H 1.09002 * 109.46987 * 119.99550 * 2 1 3 32 32 H 1.08999 * 109.47629 * 54.81108 * 3 2 1 33 33 H 1.09000 * 109.47295 * 294.80665 * 3 2 1 34 34 H 1.08998 * 109.47312 * 316.12626 * 5 4 3 35 35 H 1.08999 * 109.46818 * 196.12524 * 5 4 3 36 36 H 1.07998 * 119.97078 * 0.02562 * 7 6 5 37 37 H 1.07993 * 120.02656 * 179.69120 * 8 7 6 38 38 H 1.08999 * 109.47510 * 300.00615 * 11 10 9 39 39 H 1.09004 * 109.46699 * 60.00125 * 11 10 9 40 40 H 1.09000 * 109.47885 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.02566 * 180.02562 * 12 9 8 42 42 H 1.08002 * 119.97891 * 179.97438 * 13 12 9 43 43 H 1.09001 * 109.47524 * 329.41621 * 14 4 3 44 44 H 1.09007 * 109.46583 * 89.41410 * 14 4 3 45 45 H 1.09004 * 109.46750 * 70.55975 * 16 15 14 46 46 H 1.08994 * 109.47634 * 190.56596 * 16 15 14 47 47 H 1.08996 * 109.47009 * 310.56746 * 16 15 14 48 48 H 1.09001 * 109.47181 * 65.20997 * 17 15 14 49 49 H 1.09006 * 109.47016 * 185.20611 * 17 15 14 50 50 H 1.08992 * 109.47282 * 305.20732 * 17 15 14 51 51 H 1.09008 * 109.46517 * 299.99841 * 18 15 14 52 52 H 1.09002 * 109.47437 * 59.99643 * 18 15 14 53 53 H 0.96998 * 120.00402 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5037 1.4444 0.1253 5 6 3.9978 2.7745 0.5054 6 6 3.7335 3.0087 1.9705 7 6 2.5423 3.5835 2.3737 8 6 2.3003 3.8049 3.7157 9 6 3.2486 3.4390 4.6598 10 8 3.0104 3.6502 5.9810 11 6 4.0310 3.2481 6.8968 12 6 4.4403 2.8567 4.2532 13 6 4.6802 2.6431 2.9096 14 6 4.1389 0.9818 -1.1159 15 6 5.4723 0.3081 -0.7860 16 6 6.3952 1.3144 -0.0958 17 6 5.2265 -0.8806 0.1453 18 6 6.1288 -0.1833 -2.0777 19 6 7.4419 -0.8475 -1.7527 20 1 7.7751 -0.9122 -0.7274 21 6 8.2180 -1.3725 -2.7642 22 7 9.3641 -1.9516 -2.4807 23 14 7.6413 -1.2611 -4.5375 24 1 8.1435 -0.0017 -5.1432 25 1 8.1650 -2.4214 -5.3022 26 1 6.1568 -1.2717 -4.5769 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6027 1.9825 0.8398 33 1 1.7546 1.9288 -0.9328 34 1 3.4837 3.5348 -0.0825 35 1 5.0696 2.8318 0.3159 36 1 1.8024 3.8636 1.6386 37 1 1.3719 4.2584 4.0297 38 1 4.2060 2.1768 6.7983 39 1 4.9514 3.7884 6.6751 40 1 3.7145 3.4728 7.9153 41 1 5.1799 2.5707 4.9864 42 1 5.6080 2.1902 2.5924 43 1 3.4842 0.2670 -1.6146 44 1 4.3148 1.8334 -1.7733 45 1 6.0211 1.5223 0.9067 46 1 7.4008 0.8993 -0.0297 47 1 6.4210 2.2388 -0.6728 48 1 4.6458 -1.6393 -0.3794 49 1 6.1823 -1.3038 0.4543 50 1 4.6763 -0.5455 1.0245 51 1 5.4713 -0.9003 -2.5694 52 1 6.3040 0.6635 -2.7413 53 1 9.9099 -2.3213 -3.1923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611255663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:34 Heat of formation + Delta-G solvation = -36.267777 kcal Electronic energy + Delta-G solvation = -28078.449206 eV Core-core repulsion = 24528.478413 eV Total energy + Delta-G solvation = -3549.970793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15075 -40.05972 -38.31579 -36.82259 -34.53675 -33.87522 -32.05800 -31.54865 -29.69415 -28.75092 -27.94237 -27.38807 -26.73565 -24.83121 -23.51223 -23.49695 -21.89452 -21.38095 -19.49970 -19.04659 -18.83094 -17.20968 -16.86234 -16.61981 -16.39146 -16.33002 -15.97104 -15.71098 -15.23606 -15.01202 -14.89462 -14.68291 -14.43719 -14.35744 -14.15332 -13.91637 -13.55300 -13.45095 -13.29092 -12.90225 -12.83530 -12.78275 -12.61113 -12.49039 -12.25115 -12.20394 -12.13469 -12.01707 -11.85792 -11.74069 -11.64866 -11.60395 -11.32930 -11.20810 -10.85106 -10.68676 -10.66602 -9.87426 -9.12736 -8.94520 -8.19779 -6.19405 0.45390 0.50592 1.36069 1.38163 1.49046 2.40794 2.42613 2.73742 3.15399 3.26958 3.87993 3.96313 4.00312 4.04326 4.18367 4.18699 4.27805 4.36207 4.37183 4.40056 4.49789 4.50540 4.55835 4.62268 4.67146 4.73659 4.76128 4.81172 4.84534 4.91834 4.93625 4.95925 5.03549 5.05644 5.12192 5.15806 5.25813 5.27983 5.36422 5.37340 5.44833 5.46445 5.49121 5.51346 5.60225 5.67396 5.76701 5.81313 5.85737 5.89840 6.25078 6.35345 6.46549 6.49410 6.88000 7.42785 8.96537 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.003323 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.504037 B = 8423.984272 C = 9668.200970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.530 5.530 5 C 0.077 3.923 6 C -0.107 4.107 7 C -0.075 4.075 8 C -0.160 4.160 9 C 0.110 3.890 10 O -0.335 6.335 11 C 0.020 3.980 12 C -0.212 4.212 13 C -0.073 4.073 14 C 0.072 3.928 15 C -0.039 4.039 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.003 4.003 19 C -0.499 4.499 20 H 0.043 0.957 21 C 0.000 4.000 22 N -0.956 5.956 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.290 1.290 26 H -0.249 1.249 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.032 0.968 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.011 0.989 52 H 0.011 0.989 53 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.427 12.893 12.830 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.254 5.254 5 C -0.049 4.049 6 C -0.108 4.108 7 C -0.093 4.093 8 C -0.179 4.179 9 C 0.065 3.935 10 O -0.250 6.250 11 C -0.075 4.075 12 C -0.231 4.231 13 C -0.092 4.092 14 C -0.056 4.056 15 C -0.040 4.040 16 C -0.184 4.184 17 C -0.160 4.160 18 C -0.041 4.041 19 C -0.537 4.537 20 H 0.062 0.938 21 C -0.195 4.195 22 N -0.598 5.598 23 Si 0.764 3.236 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.173 1.173 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.029 0.971 52 H 0.029 0.971 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.337 12.572 13.216 25.865 hybrid contribution 0.731 -0.093 -1.459 1.635 sum -17.606 12.479 11.757 24.575 Atomic orbital electron populations 1.21687 0.94454 1.01967 1.02070 1.21493 0.96152 0.96368 1.01621 1.22258 0.87045 0.97359 1.00615 1.61858 1.05710 1.25082 1.32713 1.21434 1.02403 0.89475 0.91609 1.19718 0.95023 1.00876 0.95213 1.21023 0.96264 0.97041 0.94999 1.20585 1.00037 1.05580 0.91692 1.19209 0.94325 0.96271 0.83711 1.86019 1.45475 1.79545 1.13915 1.23286 0.90911 1.00426 0.92845 1.21383 0.98120 1.06168 0.97429 1.20999 0.99309 0.96690 0.92200 1.22127 0.95168 0.98214 0.90058 1.20254 0.93449 0.95207 0.95088 1.21970 0.98890 0.97581 0.99967 1.21453 0.99169 0.96515 0.98902 1.19611 0.94490 0.95155 0.94871 1.21418 1.03468 1.34797 0.94046 0.93832 1.25910 0.94940 0.95116 1.03530 1.70064 1.14162 1.41449 1.34098 0.85820 0.79989 0.77655 0.80124 1.19603 1.21612 1.17278 0.92497 0.92157 0.92386 0.93174 0.92480 0.89868 0.94679 0.93281 0.88851 0.83970 0.84219 0.92288 0.92035 0.86228 0.84443 0.85988 0.91325 0.94526 0.91225 0.94888 0.93378 0.94858 0.95791 0.91605 0.97051 0.97117 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.58 5.93 30.59 0.18 -2.40 16 3 C 0.05 1.17 4.73 86.30 0.41 1.57 16 4 N -0.53 -13.48 3.29 -900.79 -2.96 -16.44 16 5 C 0.08 1.82 4.20 85.56 0.36 2.18 16 6 C -0.11 -2.44 5.18 -19.85 -0.10 -2.54 16 7 C -0.07 -1.47 8.28 22.26 0.18 -1.29 16 8 C -0.16 -3.25 9.99 22.37 0.22 -3.03 16 9 C 0.11 2.42 6.69 22.51 0.15 2.57 16 10 O -0.34 -6.84 10.50 -92.43 -0.97 -7.81 16 11 C 0.02 0.26 9.81 113.37 1.11 1.37 16 12 C -0.21 -4.68 9.04 22.36 0.20 -4.47 16 13 C -0.07 -1.76 9.59 22.26 0.21 -1.55 16 14 C 0.07 2.17 3.99 86.30 0.34 2.52 16 15 C -0.04 -1.47 0.60 -52.18 -0.03 -1.50 16 16 C -0.13 -4.60 6.72 71.98 0.48 -4.12 16 17 C -0.10 -3.95 8.01 71.98 0.58 -3.37 16 18 C 0.00 -0.16 3.11 29.85 0.09 -0.06 16 19 C -0.50 -28.09 8.12 25.60 0.21 -27.88 16 20 H 0.04 2.70 5.99 -2.91 -0.02 2.68 16 21 C 0.00 0.03 5.47 84.66 0.46 0.49 16 22 N -0.96 -60.37 13.96 21.45 0.30 -60.07 16 23 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.21 6.72 -2.39 -0.02 1.20 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.61 5.55 -2.39 -0.01 1.59 16 33 H 0.03 0.71 8.05 -2.39 -0.02 0.69 16 34 H 0.05 1.03 7.94 -2.39 -0.02 1.01 16 35 H 0.09 2.40 3.97 -2.39 -0.01 2.39 16 36 H 0.14 2.17 7.44 -2.91 -0.02 2.15 16 37 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 39 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.14 2.54 6.30 -2.91 -0.02 2.52 16 42 H 0.12 3.03 6.15 -2.91 -0.02 3.01 16 43 H 0.07 2.07 6.26 -2.39 -0.01 2.05 16 44 H 0.04 1.08 7.85 -2.38 -0.02 1.06 16 45 H 0.07 2.19 4.42 -2.38 -0.01 2.18 16 46 H 0.03 1.41 6.34 -2.39 -0.02 1.40 16 47 H 0.05 1.60 7.20 -2.39 -0.02 1.59 16 48 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.02 1.03 6.80 -2.38 -0.02 1.02 16 50 H 0.07 2.27 7.43 -2.39 -0.02 2.25 16 51 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 52 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 53 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -66.38 395.07 4.85 -61.53 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.82 Total: 19.31 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 5.78 Total: -43.26 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.66 Total: -76.51 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.97 Total: -7.81 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -66.38 4.85 -61.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611255663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.260 kcal (2) G-P(sol) polarization free energy of solvation -66.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds