Wall clock time and date at job start Tue Mar 31 2020 12:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47175 * 2 1 4 4 C 1.53000 * 109.47375 * 119.99906 * 2 1 3 5 5 N 1.46899 * 109.47072 * 64.32495 * 4 2 1 6 6 C 1.46901 * 111.00054 * 214.77898 * 5 4 2 7 7 C 1.50706 * 109.47141 * 71.40500 * 6 5 4 8 8 H 1.07994 * 119.99640 * 3.67141 * 7 6 5 9 9 C 1.37874 * 120.00181 * 183.67414 * 7 6 5 10 10 N 1.31506 * 120.00278 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99668 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47215 * 90.00167 * 11 9 7 13 13 H 1.48500 * 109.46746 * 210.00212 * 11 9 7 14 14 H 1.48502 * 109.47309 * 329.99961 * 11 9 7 15 15 C 1.46903 * 110.99813 * 90.82536 * 5 4 2 16 16 C 1.52995 * 109.46927 * 287.74948 * 15 5 4 17 17 H 1.09004 * 109.47016 * 61.62093 * 16 15 5 18 18 C 1.52992 * 109.47581 * 301.61785 * 16 15 5 19 19 C 1.53011 * 109.46843 * 181.61495 * 16 15 5 20 20 O 1.42899 * 109.46659 * 185.00424 * 19 16 15 21 21 C 1.42904 * 113.99537 * 180.02562 * 20 19 16 22 22 C 1.50699 * 109.47116 * 179.97438 * 21 20 19 23 23 C 1.38229 * 120.00056 * 269.72739 * 22 21 20 24 24 C 1.38236 * 120.00049 * 179.76644 * 23 22 21 25 25 C 1.38235 * 119.99823 * 0.48183 * 24 23 22 26 26 C 1.38238 * 119.99919 * 359.79283 * 25 24 23 27 27 C 1.38229 * 120.00132 * 359.95209 * 26 25 24 28 28 H 1.08999 * 109.47193 * 65.03863 * 1 2 3 29 29 H 1.09000 * 109.47216 * 185.04390 * 1 2 3 30 30 H 1.09006 * 109.46798 * 305.04034 * 1 2 3 31 31 H 1.09002 * 109.47527 * 240.00235 * 2 1 3 32 32 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46853 * 300.00337 * 3 2 1 34 34 H 1.08994 * 109.47041 * 60.00244 * 3 2 1 35 35 H 1.08999 * 109.47016 * 304.32637 * 4 2 1 36 36 H 1.08996 * 109.47411 * 184.32751 * 4 2 1 37 37 H 1.09007 * 109.47039 * 191.40274 * 6 5 4 38 38 H 1.08998 * 109.47288 * 311.40337 * 6 5 4 39 39 H 0.96997 * 120.00170 * 180.02562 * 10 9 7 40 40 H 1.09003 * 109.46902 * 167.75254 * 15 5 4 41 41 H 1.08998 * 109.47039 * 47.75431 * 15 5 4 42 42 H 1.09002 * 109.47417 * 54.83981 * 18 16 15 43 43 H 1.09005 * 109.47553 * 174.84346 * 18 16 15 44 44 H 1.09004 * 109.47212 * 294.83759 * 18 16 15 45 45 H 1.08997 * 109.46909 * 305.00186 * 19 16 15 46 46 H 1.08996 * 109.46737 * 65.00484 * 19 16 15 47 47 H 1.09000 * 109.46832 * 299.99708 * 21 20 19 48 48 H 1.08998 * 109.47198 * 59.99745 * 21 20 19 49 49 H 1.08003 * 119.99974 * 359.97438 * 23 22 21 50 50 H 1.08003 * 120.00243 * 180.24763 * 24 23 22 51 51 H 1.08002 * 120.00439 * 179.76882 * 25 24 23 52 52 H 1.08008 * 119.99683 * 179.97438 * 26 25 24 53 53 H 1.08003 * 119.99775 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6375 -2.1331 1.1982 6 6 1.3360 -2.6435 2.5423 7 6 0.0442 -2.0401 3.0306 8 1 -0.5286 -1.3934 2.3826 9 6 -0.4061 -2.3136 4.3047 10 7 -1.5336 -1.7875 4.7307 11 14 0.5846 -3.4328 5.4253 12 1 1.5496 -2.6203 6.2088 13 1 -0.3328 -4.1422 6.3529 14 1 1.3243 -4.4254 4.6052 15 6 2.6674 -2.9507 0.5433 16 6 2.6704 -2.6602 -0.9588 17 1 2.9134 -1.6107 -1.1254 18 6 1.2874 -2.9618 -1.5393 19 6 3.7154 -3.5411 -1.6465 20 8 3.8005 -3.1883 -3.0287 21 6 4.7529 -3.9564 -3.7670 22 6 4.7583 -3.5029 -5.2041 23 6 3.9166 -4.1035 -6.1215 24 6 3.9181 -3.6843 -7.4388 25 6 4.7684 -2.6712 -7.8407 26 6 5.6141 -2.0745 -6.9244 27 6 5.6089 -2.4901 -5.6061 28 1 -0.3633 0.4337 -0.9317 29 1 -0.3634 -1.0237 0.0904 30 1 -0.3633 0.5901 0.8415 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6148 -0.2541 2.1375 36 1 3.1272 -0.6546 1.2889 37 1 1.2391 -3.7286 2.5056 38 1 2.1433 -2.3736 3.2230 39 1 -1.8502 -1.9796 5.6272 40 1 2.4527 -4.0065 0.7088 41 1 3.6442 -2.7086 0.9622 42 1 0.5318 -2.4023 -0.9877 43 1 1.2621 -2.6689 -2.5890 44 1 1.0828 -4.0291 -1.4550 45 1 4.6856 -3.3910 -1.1729 46 1 3.4248 -4.5877 -1.5558 47 1 5.7447 -3.8153 -3.3374 48 1 4.4835 -5.0115 -3.7203 49 1 3.2554 -4.8980 -5.8084 50 1 3.2576 -4.1508 -8.1547 51 1 4.7722 -2.3461 -8.8706 52 1 6.2788 -1.2832 -7.2386 53 1 6.2700 -2.0241 -4.8904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719590860.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:54 Heat of formation + Delta-G solvation = -45.679648 kcal Electronic energy + Delta-G solvation = -27290.028757 eV Core-core repulsion = 23739.649834 eV Total energy + Delta-G solvation = -3550.378922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.33989 -39.82113 -38.47211 -35.58719 -35.26954 -33.96389 -32.57594 -31.77704 -29.73191 -28.05843 -27.53293 -27.37533 -26.38404 -25.03902 -23.46458 -22.42722 -22.22814 -20.92175 -20.71136 -18.83994 -17.81882 -17.56728 -17.11105 -16.75757 -16.43732 -16.26421 -15.87627 -15.64892 -15.23993 -15.07923 -14.90302 -14.67774 -14.34576 -14.25428 -13.91765 -13.79906 -13.76994 -13.53143 -13.23557 -13.02865 -12.85553 -12.80622 -12.73683 -12.53648 -12.37981 -12.02829 -11.96982 -11.88659 -11.86649 -11.78676 -11.54087 -11.47795 -11.35706 -11.26501 -10.81427 -10.73582 -10.50944 -9.81057 -9.74179 -8.89673 -8.22126 -6.23169 0.35683 0.51212 1.34606 1.36401 1.46601 2.37215 2.56315 3.05346 3.11167 3.39618 3.88527 3.92237 3.94246 4.08060 4.15971 4.21598 4.25764 4.27204 4.32752 4.36166 4.41406 4.46556 4.52118 4.60583 4.62627 4.67720 4.75386 4.78173 4.79433 4.86075 4.91527 4.95553 5.05759 5.08489 5.09387 5.11524 5.16833 5.17003 5.21580 5.28914 5.37651 5.41202 5.55607 5.56515 5.62231 5.62425 5.68718 5.69325 5.85153 6.10620 6.11455 6.28897 6.49006 6.75906 6.86982 7.39907 8.94236 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.019345 B = 0.002533 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.082427 B =11051.025076 C =11720.832180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.142 4.142 4 C 0.069 3.931 5 N -0.529 5.529 6 C 0.173 3.827 7 C -0.503 4.503 8 H 0.049 0.951 9 C 0.006 3.994 10 N -0.949 5.949 11 Si 0.941 3.059 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.250 1.250 15 C 0.060 3.940 16 C -0.080 4.080 17 H 0.081 0.919 18 C -0.129 4.129 19 C 0.072 3.928 20 O -0.395 6.395 21 C 0.100 3.900 22 C -0.106 4.106 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.113 4.113 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.026 0.974 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.141 0.859 51 H 0.144 0.856 52 H 0.142 0.858 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.248 -3.097 -22.849 28.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.059 4.059 5 N -0.252 5.252 6 C 0.046 3.954 7 C -0.542 4.542 8 H 0.067 0.933 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.765 3.235 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.174 1.174 15 C -0.068 4.068 16 C -0.098 4.098 17 H 0.099 0.901 18 C -0.187 4.187 19 C -0.005 4.005 20 O -0.315 6.315 21 C 0.024 3.976 22 C -0.106 4.106 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.132 4.132 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.001 0.999 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.145 0.855 50 H 0.158 0.842 51 H 0.162 0.838 52 H 0.160 0.840 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.596 -2.999 -23.049 28.560 hybrid contribution 0.564 -0.503 1.760 1.915 sum 17.160 -3.502 -21.289 27.567 Atomic orbital electron populations 1.21628 0.96048 1.01277 0.99455 1.21322 0.95623 0.95828 0.98032 1.21796 1.01039 0.95466 1.01662 1.22111 0.96766 0.88722 0.98349 1.61685 1.41330 1.02164 1.20000 1.19965 0.94073 0.95233 0.86159 1.21342 1.05949 1.28448 0.98453 0.93297 1.25787 0.96041 0.97610 0.99648 1.70048 1.23192 1.46925 1.18938 0.85810 0.78797 0.79846 0.79009 1.19738 1.21149 1.17352 1.22144 0.92875 0.97864 0.93904 1.21161 0.95434 1.00361 0.92868 0.90126 1.21628 0.96611 1.00852 0.99583 1.22509 0.98520 0.98300 0.81161 1.87938 1.61103 1.61301 1.21124 1.21396 0.92894 0.94995 0.88326 1.19807 0.98136 0.98180 0.94525 1.21299 0.97919 1.00277 0.93775 1.21460 0.99629 0.97854 0.96065 1.21544 0.95602 0.96103 1.00764 1.21467 0.99809 1.00532 0.93130 1.21303 0.98925 0.95988 0.96936 0.92720 0.93205 0.95652 0.89522 0.91965 0.91611 0.93833 0.93641 0.94334 0.95632 0.99903 0.92760 0.91377 0.94608 0.92228 0.93247 0.93783 0.92328 0.92623 0.91485 0.91743 0.85456 0.84151 0.83842 0.84011 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.38 71.98 0.60 -4.03 16 2 C -0.09 -2.87 2.46 -10.79 -0.03 -2.90 16 3 C -0.14 -3.83 9.19 71.98 0.66 -3.17 16 4 C 0.07 2.54 4.11 86.30 0.35 2.90 16 5 N -0.53 -20.77 2.74 -900.78 -2.47 -23.23 16 6 C 0.17 8.10 3.71 85.56 0.32 8.42 16 7 C -0.50 -28.62 8.87 25.60 0.23 -28.39 16 8 H 0.05 3.09 7.45 -2.91 -0.02 3.06 16 9 C 0.01 0.33 5.47 84.66 0.46 0.80 16 10 N -0.95 -59.57 13.96 21.44 0.30 -59.27 16 11 Si 0.94 44.22 27.40 68.60 1.88 46.10 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.25 -10.88 6.65 99.48 0.66 -10.22 16 15 C 0.06 1.88 4.38 86.30 0.38 2.26 16 16 C -0.08 -2.16 2.11 -10.79 -0.02 -2.18 16 17 H 0.08 2.26 5.28 -2.38 -0.01 2.25 16 18 C -0.13 -3.84 8.39 71.98 0.60 -3.23 16 19 C 0.07 1.60 5.32 71.99 0.38 1.99 16 20 O -0.39 -9.41 9.95 -148.98 -1.48 -10.90 16 21 C 0.10 1.85 6.06 71.24 0.43 2.28 16 22 C -0.11 -2.05 5.51 -19.87 -0.11 -2.16 16 23 C -0.11 -2.07 9.70 22.27 0.22 -1.86 16 24 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 27 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 2.08 5.95 -2.39 -0.01 2.06 16 30 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 2.62 4.21 -2.39 -0.01 2.61 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 2.01 7.02 -2.39 -0.02 1.99 16 36 H 0.04 1.28 7.51 -2.39 -0.02 1.26 16 37 H 0.03 1.20 7.05 -2.38 -0.02 1.18 16 38 H -0.02 -0.78 7.29 -2.39 -0.02 -0.80 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.07 2.10 7.73 -2.39 -0.02 2.09 16 41 H 0.04 1.04 7.72 -2.39 -0.02 1.02 16 42 H 0.06 2.05 5.08 -2.39 -0.01 2.04 16 43 H 0.05 1.41 7.96 -2.38 -0.02 1.39 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 48 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 49 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 50 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 51 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 52 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 53 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -66.75 408.58 4.39 -62.36 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.80 Total: 21.05 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 5.37 Total: -36.11 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -2.17 Total: -82.51 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -1.48 Total: -10.90 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Total: -66.75 4.39 -62.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719590860.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.680 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds