Wall clock time and date at job start Tue Mar 31 2020 12:22:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47102 * 2 1
4 4 C 1.53001 * 109.46956 * 120.00528 * 2 1 3
5 5 N 1.46899 * 109.47306 * 66.52584 * 4 2 1
6 6 C 1.46899 * 110.99730 * 196.69283 * 5 4 2
7 7 C 1.50696 * 109.47129 * 76.57983 * 6 5 4
8 8 C 1.38303 * 119.93124 * 89.99717 * 7 6 5
9 9 C 1.38103 * 120.06860 * 179.97438 * 8 7 6
10 10 C 1.38879 * 119.92783 * 0.02562 * 9 8 7
11 11 O 1.35755 * 120.06923 * 180.02562 * 10 9 8
12 12 C 1.34831 * 116.99800 * 5.34274 * 11 10 9
13 13 H 1.08004 * 120.00016 * 354.89944 * 12 11 10
14 14 C 1.38659 * 120.00200 * 174.90115 * 12 11 10
15 15 N 1.31555 * 119.99937 * 359.97438 * 14 12 11
16 16 Si 1.86799 * 120.00152 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.47202 * 359.97438 * 16 14 12
18 18 H 1.48501 * 109.47004 * 119.99686 * 16 14 12
19 19 H 1.48499 * 109.47192 * 239.99759 * 16 14 12
20 20 C 1.38877 * 119.86527 * 0.27587 * 10 9 8
21 21 C 1.38097 * 119.93021 * 359.44314 * 20 10 9
22 22 C 1.46901 * 110.99580 * 72.74634 * 5 4 2
23 23 C 1.53007 * 109.46844 * 210.63673 * 22 5 4
24 24 C 1.53006 * 109.46841 * 60.72002 * 23 22 5
25 25 C 1.52997 * 109.47077 * 180.71978 * 23 22 5
26 26 C 1.52999 * 109.47020 * 300.72207 * 23 22 5
27 27 H 1.08999 * 109.46954 * 65.76646 * 1 2 3
28 28 H 1.09001 * 109.47273 * 185.76393 * 1 2 3
29 29 H 1.08997 * 109.47135 * 305.76563 * 1 2 3
30 30 H 1.09002 * 109.46922 * 239.99780 * 2 1 3
31 31 H 1.08998 * 109.46831 * 179.97438 * 3 2 1
32 32 H 1.08997 * 109.47202 * 299.99931 * 3 2 1
33 33 H 1.09008 * 109.46819 * 60.00376 * 3 2 1
34 34 H 1.09003 * 109.47112 * 306.52768 * 4 2 1
35 35 H 1.08996 * 109.47295 * 186.53494 * 4 2 1
36 36 H 1.09002 * 109.47321 * 316.57604 * 6 5 4
37 37 H 1.09003 * 109.46773 * 196.57559 * 6 5 4
38 38 H 1.07995 * 119.96834 * 359.97438 * 8 7 6
39 39 H 1.07992 * 120.03886 * 179.97438 * 9 8 7
40 40 H 0.96992 * 120.00424 * 180.02562 * 15 14 12
41 41 H 1.08006 * 120.03369 * 179.72738 * 20 10 9
42 42 H 1.07996 * 119.96871 * 180.27292 * 21 20 10
43 43 H 1.08995 * 109.47362 * 330.63213 * 22 5 4
44 44 H 1.08997 * 109.47891 * 90.63819 * 22 5 4
45 45 H 1.08995 * 109.47102 * 62.23490 * 24 23 22
46 46 H 1.09003 * 109.46736 * 182.23221 * 24 23 22
47 47 H 1.08997 * 109.47266 * 302.23414 * 24 23 22
48 48 H 1.08997 * 109.47586 * 59.99823 * 25 23 22
49 49 H 1.09004 * 109.47177 * 180.02562 * 25 23 22
50 50 H 1.09000 * 109.47246 * 299.99843 * 25 23 22
51 51 H 1.08993 * 109.47448 * 69.57133 * 26 23 22
52 52 H 1.09003 * 109.46662 * 189.57184 * 26 23 22
53 53 H 1.09002 * 109.47052 * 309.56568 * 26 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7214 1.2492
5 7 1.6831 -2.1443 1.1730
6 6 1.7918 -2.7855 2.4902
7 6 0.6049 -2.4011 3.3355
8 6 -0.5406 -3.1756 3.3095
9 6 -1.6298 -2.8262 4.0834
10 6 -1.5740 -1.6955 4.8879
11 8 -2.6427 -1.3497 5.6503
12 6 -3.6853 -2.2046 5.6663
13 1 -3.6803 -3.0745 5.0263
14 6 -4.7640 -1.9668 6.5045
15 7 -4.7700 -0.9073 7.2844
16 14 -6.2087 -3.1507 6.5262
17 1 -5.9594 -4.2537 5.5637
18 1 -6.3686 -3.7115 7.8919
19 1 -7.4470 -2.4277 6.1399
20 6 -0.4245 -0.9164 4.9071
21 6 0.6634 -1.2743 4.1353
22 6 2.5091 -2.8416 0.1783
23 6 1.7079 -3.9928 -0.4331
24 6 0.4627 -3.4359 -1.1262
25 6 2.5742 -4.7302 -1.4562
26 6 1.2856 -4.9634 0.6716
27 1 -0.3633 0.4218 -0.9371
28 1 -0.3634 -1.0225 0.1032
29 1 -0.3633 0.6006 0.8338
30 1 1.8933 -0.5139 -0.8900
31 1 3.1300 1.4424 0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6767 1.9563 0.8901
34 1 1.5844 -0.2795 2.1354
35 1 3.1236 -0.6212 1.3097
36 1 2.7084 -2.4567 2.9798
37 1 1.8142 -3.8683 2.3664
38 1 -0.5836 -4.0544 2.6833
39 1 -2.5242 -3.4310 4.0624
40 1 -5.5243 -0.7411 7.8710
41 1 -0.3797 -0.0341 5.5284
42 1 1.5592 -0.6713 4.1531
43 1 2.7990 -2.1435 -0.6070
44 1 3.4028 -3.2371 0.6609
45 1 0.7642 -2.7752 -1.9389
46 1 -0.1285 -4.2591 -1.5275
47 1 -0.1346 -2.8769 -0.4060
48 1 3.4613 -5.1269 -0.9625
49 1 2.0033 -5.5501 -1.8921
50 1 2.8751 -4.0387 -2.2432
51 1 0.5357 -4.4893 1.3047
52 1 0.8658 -5.8639 0.2231
53 1 2.1545 -5.2287 1.2739
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000761974697.mol2 53
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:22:15
Heat of formation + Delta-G solvation = -32.217780 kcal
Electronic energy + Delta-G solvation = -28315.943116 eV
Core-core repulsion = 24766.147944 eV
Total energy + Delta-G solvation = -3549.795172 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 319.225 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.94849 -40.02636 -38.12227 -37.00797 -34.88590 -34.19134 -31.83432 -31.31948
-28.48889 -28.18284 -27.66706 -27.52149 -27.29569 -26.45247 -23.64248 -23.43340
-21.70448 -20.75434 -19.80220 -19.56728 -18.81461 -16.96103 -16.62811 -16.25821
-16.18870 -15.99232 -15.63061 -15.47902 -15.33146 -15.04249 -14.93745 -14.49670
-14.38735 -14.28426 -14.09398 -13.68490 -13.47481 -13.31484 -13.11562 -12.98394
-12.92591 -12.76960 -12.66818 -12.42375 -12.40671 -12.33287 -12.13324 -12.09811
-12.00250 -11.72572 -11.68419 -11.45976 -11.39038 -11.17044 -11.12509 -10.90350
-10.76904 -9.71326 -9.04596 -8.81936 -8.45721 -6.13288 0.64871 0.74860
1.34960 1.43256 1.53244 2.18494 2.78545 3.07417 3.36923 3.55597
3.92120 4.00564 4.04876 4.08258 4.09266 4.18411 4.25041 4.27475
4.38141 4.50203 4.58820 4.63812 4.67685 4.75376 4.77967 4.82194
4.85315 4.87183 4.89147 4.96325 4.98692 5.03017 5.07152 5.13174
5.14598 5.17807 5.18686 5.22575 5.26170 5.33018 5.34660 5.36494
5.47029 5.52846 5.57835 5.60681 5.66038 5.77997 5.82874 5.87942
6.05774 6.25401 6.33749 6.41006 6.99533 7.82046 8.78076
Molecular weight = 319.23amu
Principal moments of inertia in cm(-1)
A = 0.014565 B = 0.003312 C = 0.003013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1921.913276 B = 8453.148879 C = 9289.701026
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.080 4.080
3 C -0.145 4.145
4 C 0.056 3.944
5 N -0.529 5.529
6 C 0.098 3.902
7 C -0.138 4.138
8 C -0.051 4.051
9 C -0.241 4.241
10 C 0.113 3.887
11 O -0.236 6.236
12 C -0.410 4.410
13 H 0.100 0.900
14 C -0.024 4.024
15 N -0.922 5.922
16 Si 1.017 2.983
17 H -0.252 1.252
18 H -0.268 1.268
19 H -0.269 1.269
20 C -0.204 4.204
21 C -0.061 4.061
22 C 0.065 3.935
23 C -0.057 4.057
24 C -0.130 4.130
25 C -0.137 4.137
26 C -0.149 4.149
27 H 0.049 0.951
28 H 0.058 0.942
29 H 0.029 0.971
30 H 0.075 0.925
31 H 0.062 0.938
32 H 0.059 0.941
33 H 0.045 0.955
34 H 0.063 0.937
35 H 0.040 0.960
36 H 0.043 0.957
37 H 0.102 0.898
38 H 0.134 0.866
39 H 0.114 0.886
40 H 0.272 0.728
41 H 0.107 0.893
42 H 0.138 0.862
43 H 0.076 0.924
44 H 0.043 0.957
45 H 0.050 0.950
46 H 0.043 0.957
47 H 0.055 0.945
48 H 0.057 0.943
49 H 0.056 0.944
50 H 0.058 0.942
51 H 0.058 0.942
52 H 0.051 0.949
53 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.996 -5.294 -18.291 25.524
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.099 4.099
3 C -0.203 4.203
4 C -0.072 4.072
5 N -0.253 5.253
6 C -0.028 4.028
7 C -0.140 4.140
8 C -0.069 4.069
9 C -0.261 4.261
10 C 0.063 3.937
11 O -0.143 6.143
12 C -0.486 4.486
13 H 0.117 0.883
14 C -0.221 4.221
15 N -0.561 5.561
16 Si 0.837 3.163
17 H -0.175 1.175
18 H -0.193 1.193
19 H -0.194 1.194
20 C -0.223 4.223
21 C -0.079 4.079
22 C -0.063 4.063
23 C -0.058 4.058
24 C -0.187 4.187
25 C -0.195 4.195
26 C -0.206 4.206
27 H 0.068 0.932
28 H 0.077 0.923
29 H 0.048 0.952
30 H 0.094 0.906
31 H 0.081 0.919
32 H 0.078 0.922
33 H 0.064 0.936
34 H 0.081 0.919
35 H 0.058 0.942
36 H 0.061 0.939
37 H 0.120 0.880
38 H 0.152 0.848
39 H 0.132 0.868
40 H 0.081 0.919
41 H 0.125 0.875
42 H 0.155 0.845
43 H 0.095 0.905
44 H 0.061 0.939
45 H 0.069 0.931
46 H 0.062 0.938
47 H 0.074 0.926
48 H 0.076 0.924
49 H 0.075 0.925
50 H 0.077 0.923
51 H 0.077 0.923
52 H 0.070 0.930
53 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 16.362 -5.035 -18.162 24.959
hybrid contribution -0.364 0.034 0.864 0.938
sum 15.998 -5.001 -17.299 24.087
Atomic orbital electron populations
1.21724 0.95900 1.01833 0.99939 1.21022 0.95471 0.95658 0.97751
1.21811 1.01143 0.95624 1.01720 1.22258 0.97791 0.88324 0.98809
1.61802 1.55406 1.01839 1.06230 1.21225 0.93041 1.00744 0.87832
1.19559 0.96768 0.96888 1.00747 1.20865 0.91431 0.98899 0.95749
1.21220 1.01332 1.00104 1.03405 1.19887 0.88210 0.94195 0.91373
1.83938 1.23441 1.46127 1.60763 1.21836 0.95608 1.06258 1.24942
0.88264 1.26567 1.01520 0.99458 0.94558 1.70189 1.32607 1.28392
1.24920 0.84550 0.75678 0.77064 0.79052 1.17495 1.19297 1.19360
1.20381 0.92974 1.02388 1.06581 1.20813 0.96511 0.96167 0.94437
1.22246 0.93493 0.95842 0.94691 1.20466 0.95658 0.94491 0.95178
1.21760 0.97204 0.99991 0.99768 1.21827 0.99352 1.00031 0.98297
1.22159 1.01240 0.98635 0.98570 0.93167 0.92283 0.95224 0.90645
0.91904 0.92163 0.93573 0.91861 0.94174 0.93892 0.88036 0.84828
0.86829 0.91925 0.87456 0.84464 0.90542 0.93911 0.93136 0.93809
0.92631 0.92403 0.92537 0.92341 0.92275 0.92979 0.92450
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.25 9.15 71.98 0.66 -2.59 16
2 C -0.08 -1.53 2.92 -10.79 -0.03 -1.56 16
3 C -0.15 -2.46 9.19 71.98 0.66 -1.80 16
4 C 0.06 1.14 4.09 86.30 0.35 1.49 16
5 N -0.53 -10.78 2.76 -900.80 -2.49 -13.27 16
6 C 0.10 2.21 4.15 85.56 0.36 2.57 16
7 C -0.14 -4.26 5.19 -19.83 -0.10 -4.36 16
8 C -0.05 -1.78 9.56 22.25 0.21 -1.57 16
9 C -0.24 -10.72 9.17 22.39 0.21 -10.52 16
10 C 0.11 5.76 6.65 22.58 0.15 5.91 16
11 O -0.24 -14.52 9.76 -22.80 -0.22 -14.74 16
12 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16
13 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16
14 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16
15 N -0.92 -57.60 13.67 21.61 0.30 -57.30 16
16 Si 1.02 43.69 29.55 68.60 2.03 45.72 16
17 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16
18 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16
19 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
20 C -0.20 -8.87 9.99 22.39 0.22 -8.64 16
21 C -0.06 -2.05 8.31 22.25 0.18 -1.87 16
22 C 0.06 1.05 3.97 86.31 0.34 1.40 16
23 C -0.06 -0.92 0.85 -52.18 -0.04 -0.97 16
24 C -0.13 -2.41 8.34 71.98 0.60 -1.81 16
25 C -0.14 -1.77 8.46 71.98 0.61 -1.16 16
26 C -0.15 -2.62 6.82 71.98 0.49 -2.13 16
27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
28 H 0.06 1.57 5.91 -2.39 -0.01 1.56 16
29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.08 1.31 6.54 -2.39 -0.02 1.29 16
31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
33 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16
34 H 0.06 1.54 5.58 -2.39 -0.01 1.53 16
35 H 0.04 0.72 8.04 -2.39 -0.02 0.70 16
36 H 0.04 0.90 7.93 -2.39 -0.02 0.88 16
37 H 0.10 2.09 4.14 -2.39 -0.01 2.08 16
38 H 0.13 3.92 6.06 -2.91 -0.02 3.91 16
39 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16
40 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
41 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16
42 H 0.14 3.76 7.43 -2.91 -0.02 3.74 16
43 H 0.08 1.16 6.23 -2.39 -0.01 1.14 16
44 H 0.04 0.65 7.83 -2.39 -0.02 0.63 16
45 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
46 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
47 H 0.05 1.28 5.81 -2.39 -0.01 1.27 16
48 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16
50 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
51 H 0.06 1.25 4.35 -2.39 -0.01 1.24 16
52 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16
53 H 0.06 0.92 7.16 -2.39 -0.02 0.90 16
Total: -1.00 -68.42 398.60 6.47 -61.96
By element:
Atomic # 1 Polarization: 29.04 SS G_CDS: 0.88 Total: 29.91 kcal
Atomic # 6 Polarization: -58.26 SS G_CDS: 5.98 Total: -52.28 kcal
Atomic # 7 Polarization: -68.38 SS G_CDS: -2.19 Total: -70.57 kcal
Atomic # 8 Polarization: -14.52 SS G_CDS: -0.22 Total: -14.74 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -68.42 6.47 -61.96 kcal
The number of atoms in the molecule is 53
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000761974697.mol2 53
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.739 kcal
(2) G-P(sol) polarization free energy of solvation -68.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.686 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds