Wall clock time and date at job start Tue Mar 31 2020 12:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46929 * 2 1 4 4 C 1.53001 * 109.47085 * 119.99573 * 2 1 3 5 5 C 1.53002 * 109.46942 * 65.00279 * 4 2 1 6 6 H 1.09005 * 109.47328 * 305.00039 * 5 4 2 7 7 C 1.53001 * 109.47158 * 65.00015 * 5 4 2 8 8 C 1.53001 * 109.47202 * 185.00184 * 5 4 2 9 9 C 1.53000 * 109.47185 * 174.99854 * 8 5 4 10 10 H 1.09007 * 109.46791 * 54.99967 * 9 8 5 11 11 C 1.53005 * 109.47014 * 174.99552 * 9 8 5 12 12 N 1.46894 * 109.47253 * 295.00187 * 9 8 5 13 13 C 1.46898 * 111.00061 * 155.00076 * 12 9 8 14 14 C 1.50699 * 109.47073 * 179.97438 * 13 12 9 15 15 C 1.38303 * 119.93178 * 269.72378 * 14 13 12 16 16 C 1.38102 * 120.07016 * 179.72113 * 15 14 13 17 17 C 1.38879 * 119.93059 * 0.57851 * 16 15 14 18 18 O 1.35744 * 120.07041 * 179.67768 * 17 16 15 19 19 C 1.34829 * 117.00210 * 174.48132 * 18 17 16 20 20 H 1.08001 * 120.00035 * 5.06208 * 19 18 17 21 21 C 1.38651 * 120.00042 * 185.05551 * 19 18 17 22 22 N 1.31556 * 120.00335 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46792 * 90.00420 * 23 21 19 25 25 H 1.48494 * 109.46986 * 210.00385 * 23 21 19 26 26 H 1.48501 * 109.47069 * 330.00565 * 23 21 19 27 27 C 1.38881 * 119.85801 * 359.69538 * 17 16 15 28 28 C 1.38099 * 119.93237 * 0.02562 * 27 17 16 29 29 H 1.09003 * 109.46801 * 60.00718 * 1 2 3 30 30 H 1.09006 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47423 * 300.00179 * 1 2 3 32 32 H 1.08997 * 109.47423 * 239.99821 * 2 1 3 33 33 H 1.09006 * 109.47043 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47250 * 299.99560 * 3 2 1 35 35 H 1.09005 * 109.47536 * 59.99668 * 3 2 1 36 36 H 1.09000 * 109.47196 * 305.00628 * 4 2 1 37 37 H 1.09001 * 109.47475 * 184.99859 * 4 2 1 38 38 H 1.09001 * 109.47165 * 299.99711 * 7 5 4 39 39 H 1.08995 * 109.46911 * 59.99817 * 7 5 4 40 40 H 1.09002 * 109.47210 * 180.02562 * 7 5 4 41 41 H 1.08994 * 109.47282 * 54.99953 * 8 5 4 42 42 H 1.09000 * 109.47013 * 294.99765 * 8 5 4 43 43 H 1.09002 * 109.46575 * 60.00405 * 11 9 8 44 44 H 1.08996 * 109.46469 * 179.97438 * 11 9 8 45 45 H 1.09000 * 109.47302 * 300.00391 * 11 9 8 46 46 H 1.00906 * 110.99471 * 278.95124 * 12 9 8 47 47 H 1.08994 * 109.46980 * 299.99646 * 13 12 9 48 48 H 1.08997 * 109.47138 * 59.99947 * 13 12 9 49 49 H 1.08001 * 119.96427 * 359.97438 * 15 14 13 50 50 H 1.07999 * 120.03168 * 180.27326 * 16 15 14 51 51 H 0.96995 * 120.00392 * 180.02562 * 22 21 19 52 52 H 1.08000 * 120.02763 * 179.97438 * 27 17 16 53 53 H 1.07998 * 119.96282 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2707 1.0528 7 6 2.3449 -2.8707 0.0128 8 6 2.0353 -2.8887 2.4920 9 6 1.5207 -4.3295 2.4822 10 1 1.8841 -4.8391 1.5897 11 6 2.0261 -5.0601 3.7280 12 7 0.0517 -4.3248 2.4794 13 6 -0.4775 -5.5625 1.8912 14 6 -1.9839 -5.5216 1.9061 15 6 -2.6771 -6.0214 2.9935 16 6 -4.0574 -5.9801 3.0127 17 6 -4.7497 -5.4469 1.9333 18 8 -6.1066 -5.4109 1.9463 19 6 -6.7121 -4.7783 0.9211 20 1 -6.1248 -4.4007 0.0971 21 6 -8.0887 -4.6126 0.9246 22 7 -8.8040 -5.0721 1.9284 23 14 -8.9275 -3.7366 -0.4963 24 1 -9.2987 -4.7272 -1.5384 25 1 -10.1510 -3.0541 -0.0039 26 1 -7.9997 -2.7324 -1.0758 27 6 -4.0509 -4.9511 0.8404 28 6 -2.6705 -4.9900 0.8298 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2953 38 1 2.0599 -2.3768 -0.9162 39 1 3.4238 -2.7954 0.1481 40 1 2.0562 -3.9209 -0.0311 41 1 1.6008 -2.3535 3.3362 42 1 3.1214 -2.8915 2.5836 43 1 1.6626 -4.5505 4.6204 44 1 1.6590 -6.0863 3.7212 45 1 3.1161 -5.0635 3.7300 46 1 -0.3111 -4.1828 3.4101 47 1 -0.1264 -5.6555 0.8636 48 1 -0.1319 -6.4176 2.4721 49 1 -2.1383 -6.4406 3.8304 50 1 -4.5979 -6.3665 3.8641 51 1 -9.7671 -4.9566 1.9306 52 1 -4.5865 -4.5362 -0.0007 53 1 -2.1265 -4.6049 -0.0201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780728703.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:37 Heat of formation + Delta-G solvation = -57.304511 kcal Electronic energy + Delta-G solvation = -26890.776531 eV Core-core repulsion = 23339.893516 eV Total energy + Delta-G solvation = -3550.883014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78633 -39.48553 -38.48275 -37.23476 -34.54525 -34.08936 -32.24477 -31.74692 -29.66423 -27.98911 -27.63261 -27.46188 -27.20587 -25.21452 -23.59743 -22.44224 -21.97961 -20.89855 -20.12837 -19.81941 -18.81354 -16.89812 -16.48491 -16.41650 -16.26672 -16.13517 -15.55966 -15.46789 -15.42919 -14.98700 -14.79230 -14.60224 -14.43421 -14.27433 -13.97127 -13.79711 -13.57137 -13.42986 -13.17987 -13.02099 -12.93136 -12.82104 -12.70914 -12.44545 -12.36710 -12.27539 -12.24427 -12.13126 -12.10405 -11.92798 -11.73786 -11.47295 -11.15917 -11.13575 -10.99189 -10.83917 -10.78008 -9.74919 -9.17926 -8.85597 -8.46763 -6.14680 0.62918 0.71233 1.34700 1.43931 1.52284 2.18063 2.80898 3.13436 3.53997 3.56718 3.77996 4.03131 4.07170 4.09310 4.12803 4.19353 4.23404 4.32776 4.39473 4.48925 4.55607 4.58565 4.63423 4.67566 4.76237 4.81671 4.84070 4.85175 4.85906 4.93124 5.01518 5.05009 5.10297 5.11447 5.12704 5.17131 5.19753 5.21242 5.26585 5.28519 5.33532 5.36807 5.44185 5.51094 5.55070 5.59626 5.71490 5.74205 5.85218 5.86440 6.04144 6.22308 6.33033 6.60291 6.98289 7.79820 8.76702 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.002876 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.112449 B = 9733.618128 C =11734.218649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.086 4.086 6 H 0.070 0.930 7 C -0.143 4.143 8 C -0.095 4.095 9 C 0.083 3.917 10 H 0.080 0.920 11 C -0.179 4.179 12 N -0.683 5.683 13 C 0.125 3.875 14 C -0.154 4.154 15 C -0.060 4.060 16 C -0.205 4.205 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.412 4.412 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 1.017 2.983 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.254 1.254 27 C -0.243 4.243 28 C -0.049 4.049 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.339 0.661 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.145 0.855 50 H 0.111 0.889 51 H 0.272 0.728 52 H 0.115 0.885 53 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.532 6.369 -2.049 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.105 4.105 6 H 0.088 0.912 7 C -0.200 4.200 8 C -0.133 4.133 9 C -0.027 4.027 10 H 0.098 0.902 11 C -0.238 4.238 12 N -0.314 5.314 13 C -0.004 4.004 14 C -0.155 4.155 15 C -0.079 4.079 16 C -0.225 4.225 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.836 3.164 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.263 4.263 28 C -0.068 4.068 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.158 0.842 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.162 0.838 50 H 0.129 0.871 51 H 0.081 0.919 52 H 0.133 0.867 53 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 26.135 6.628 -2.414 27.070 hybrid contribution -1.007 -0.388 0.356 1.137 sum 25.128 6.239 -2.058 25.973 Atomic orbital electron populations 1.21879 0.96088 1.01516 1.01129 1.21142 0.95140 0.96315 0.98853 1.21839 1.01103 0.95815 1.01576 1.21652 1.00488 0.94957 0.97116 1.21058 1.00916 0.93762 0.94739 0.91175 1.21864 1.00117 1.00152 0.97873 1.21560 1.00000 0.94393 0.97388 1.21671 0.86812 0.96350 0.97856 0.90205 1.22469 1.02346 1.00398 0.98586 1.60610 1.07035 1.36099 1.27616 1.20592 0.88503 0.91094 1.00196 1.19640 0.95963 1.04699 0.95166 1.20873 0.91511 0.97330 0.98149 1.20433 0.95095 1.08930 0.97999 1.19943 0.84034 0.94795 0.95000 1.83935 1.15230 1.68358 1.46534 1.21802 0.91370 1.36224 0.99456 0.88266 1.26571 0.95800 0.98067 1.01582 1.70181 1.07210 1.45830 1.32827 0.84612 0.77754 0.78157 0.75857 1.18722 1.19523 1.17732 1.21240 0.95835 1.09504 0.99685 1.20866 0.91822 0.95714 0.98380 0.93081 0.93072 0.93458 0.91063 0.92137 0.92811 0.93066 0.92938 0.91705 0.93174 0.92498 0.93103 0.92792 0.91128 0.92604 0.92983 0.91263 0.84225 0.90410 0.93843 0.83754 0.87107 0.91859 0.86740 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.95 71.98 0.64 -2.24 16 2 C -0.10 -1.55 2.78 -10.79 -0.03 -1.58 16 3 C -0.15 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.10 -1.64 4.15 30.60 0.13 -1.51 16 5 C -0.09 -1.44 2.20 -10.79 -0.02 -1.46 16 6 H 0.07 1.53 5.82 -2.38 -0.01 1.51 16 7 C -0.14 -2.17 8.72 71.98 0.63 -1.54 16 8 C -0.10 -1.45 4.36 30.59 0.13 -1.31 16 9 C 0.08 1.30 2.45 44.92 0.11 1.41 16 10 H 0.08 1.26 6.00 -2.38 -0.01 1.24 16 11 C -0.18 -2.45 9.16 71.98 0.66 -1.79 16 12 N -0.68 -13.83 5.61 -495.59 -2.78 -16.60 16 13 C 0.12 2.75 5.61 85.56 0.48 3.23 16 14 C -0.15 -4.69 5.40 -19.84 -0.11 -4.80 16 15 C -0.06 -1.98 9.69 22.25 0.22 -1.77 16 16 C -0.21 -8.81 9.99 22.39 0.22 -8.58 16 17 C 0.11 5.70 6.65 22.58 0.15 5.85 16 18 O -0.23 -14.34 9.76 -22.66 -0.22 -14.57 16 19 C -0.41 -24.48 9.49 67.92 0.64 -23.84 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 21 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 22 N -0.92 -57.42 13.67 21.61 0.30 -57.13 16 23 Si 1.02 43.56 29.55 68.60 2.03 45.59 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 27 C -0.24 -10.83 9.17 22.39 0.21 -10.63 16 28 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.11 6.46 -2.38 -0.02 1.10 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.14 6.34 -2.39 -0.02 1.12 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.79 6.46 -2.39 -0.02 0.77 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 0.80 6.46 -2.39 -0.02 0.79 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 44 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.34 7.15 8.46 -89.69 -0.76 6.39 16 47 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 48 H 0.04 0.86 7.37 -2.39 -0.02 0.84 16 49 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 50 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 51 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 52 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 53 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -68.09 412.92 4.84 -63.25 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.11 Total: 33.80 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 5.40 Total: -54.34 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -2.48 Total: -73.73 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.57 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -68.09 4.84 -63.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780728703.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.948 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds