Wall clock time and date at job start Tue Mar 31 2020 12:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 C 1.52991 * 109.47372 * 120.00162 * 2 1 3 5 5 C 1.53000 * 109.47454 * 175.00255 * 4 2 1 6 6 H 1.09000 * 109.47343 * 54.99661 * 5 4 2 7 7 C 1.53003 * 109.47069 * 295.00036 * 5 4 2 8 8 C 1.53004 * 109.47511 * 175.00176 * 5 4 2 9 9 C 1.53000 * 109.46866 * 293.93412 * 8 5 4 10 10 H 1.09001 * 109.47019 * 57.10018 * 9 8 5 11 11 C 1.52993 * 109.46966 * 177.09882 * 9 8 5 12 12 N 1.46900 * 109.47479 * 297.10363 * 9 8 5 13 13 C 1.46890 * 111.00267 * 154.99829 * 12 9 8 14 14 C 1.50703 * 109.47169 * 179.97438 * 13 12 9 15 15 C 1.38307 * 119.92581 * 90.00295 * 14 13 12 16 16 C 1.38098 * 120.06363 * 180.30179 * 15 14 13 17 17 C 1.38878 * 119.93274 * 359.46800 * 16 15 14 18 18 O 1.35760 * 120.07042 * 180.25733 * 17 16 15 19 19 C 1.34824 * 116.99992 * 174.71856 * 18 17 16 20 20 H 1.08002 * 119.99743 * 5.08485 * 19 18 17 21 21 C 1.38653 * 119.99809 * 185.07760 * 19 18 17 22 22 N 1.31561 * 120.00043 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00112 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47186 * 89.99935 * 23 21 19 25 25 H 1.48502 * 109.47345 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.47137 * 329.99850 * 23 21 19 27 27 C 1.38875 * 119.86212 * 0.52935 * 17 16 15 28 28 C 1.38101 * 119.93229 * 359.72484 * 27 17 16 29 29 H 1.08997 * 109.47173 * 299.99583 * 1 2 3 30 30 H 1.08999 * 109.46812 * 59.99666 * 1 2 3 31 31 H 1.09000 * 109.46640 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47173 * 240.00417 * 2 1 3 33 33 H 1.08999 * 109.47677 * 299.99804 * 3 2 1 34 34 H 1.09002 * 109.46987 * 60.00720 * 3 2 1 35 35 H 1.08999 * 109.46960 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47270 * 54.99942 * 4 2 1 37 37 H 1.09005 * 109.47616 * 295.00176 * 4 2 1 38 38 H 1.09001 * 109.46708 * 305.39634 * 7 5 4 39 39 H 1.08997 * 109.46952 * 65.38688 * 7 5 4 40 40 H 1.08995 * 109.47589 * 185.39247 * 7 5 4 41 41 H 1.08993 * 109.47213 * 173.93719 * 8 5 4 42 42 H 1.09001 * 109.47124 * 53.93332 * 8 5 4 43 43 H 1.08997 * 109.47588 * 300.00124 * 11 9 8 44 44 H 1.09001 * 109.47140 * 60.00211 * 11 9 8 45 45 H 1.09005 * 109.47127 * 180.02562 * 11 9 8 46 46 H 1.00899 * 110.99700 * 278.95539 * 12 9 8 47 47 H 1.09003 * 109.47440 * 60.00005 * 13 12 9 48 48 H 1.08997 * 109.47433 * 300.00095 * 13 12 9 49 49 H 1.07997 * 119.96508 * 0.02562 * 15 14 13 50 50 H 1.08000 * 120.03360 * 179.72533 * 16 15 14 51 51 H 0.96995 * 119.99924 * 179.97438 * 22 21 19 52 52 H 1.07997 * 120.03674 * 179.70603 * 27 17 16 53 53 H 1.07995 * 119.96821 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1879 6 1 3.9955 0.1612 1.0526 7 6 3.9651 -1.7251 0.0125 8 6 4.0853 -1.4394 2.4917 9 6 3.8182 -0.4732 3.6476 10 1 2.7516 -0.2550 3.6997 11 6 4.2729 -1.1118 4.9615 12 7 4.5627 0.7736 3.4257 13 6 3.9239 1.8990 4.1206 14 6 4.7143 3.1576 3.8708 15 6 4.4124 3.9577 2.7838 16 6 5.1389 5.1083 2.5487 17 6 6.1664 5.4675 3.4113 18 8 6.8790 6.6008 3.1857 19 6 7.7876 6.9485 4.1192 20 1 7.9803 6.2931 4.9556 21 6 8.4746 8.1474 4.0051 22 7 9.3616 8.4865 4.9157 23 14 8.1409 9.2812 2.5586 24 1 7.0506 10.2258 2.9113 25 1 9.3721 10.0454 2.2342 26 1 7.7345 8.4739 1.3803 27 6 6.4670 4.6620 4.5019 28 6 5.7403 3.5098 4.7287 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1370 38 1 3.4577 -2.6860 0.0979 39 1 3.6787 -1.2449 -0.9231 40 1 5.0437 -1.8812 0.0255 41 1 5.1573 -1.6173 2.4072 42 1 3.5742 -2.3833 2.6817 43 1 3.7205 -2.0369 5.1262 44 1 5.3396 -1.3300 4.9094 45 1 4.0822 -0.4236 5.7850 46 1 5.5264 0.6743 3.7078 47 1 3.8942 1.6955 5.1911 48 1 2.9080 2.0274 3.7470 49 1 3.6106 3.6799 2.1158 50 1 4.9056 5.7304 1.6972 51 1 9.8425 9.3251 4.8356 52 1 7.2685 4.9362 5.1718 53 1 5.9734 2.8833 5.5769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780728707.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:42 Heat of formation + Delta-G solvation = -40.873895 kcal Electronic energy + Delta-G solvation = -27168.761097 eV Core-core repulsion = 23618.590568 eV Total energy + Delta-G solvation = -3550.170529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.29177 -38.68447 -37.16733 -36.10853 -33.53501 -32.40658 -31.33110 -30.22384 -28.55851 -27.25929 -27.00650 -26.46518 -25.52385 -23.82989 -22.05242 -21.38909 -20.74990 -20.26365 -19.31232 -17.86997 -17.28192 -15.95400 -15.62804 -15.28834 -14.99996 -14.59245 -14.49742 -14.11900 -13.98335 -13.79913 -13.74332 -13.52084 -13.27190 -13.12052 -12.68660 -12.64166 -12.62642 -12.43722 -12.31069 -12.19034 -12.04550 -11.77766 -11.74968 -11.49291 -11.28213 -11.23337 -11.14136 -10.97112 -10.72379 -10.70753 -10.56452 -10.29913 -10.23185 -10.19680 -10.13138 -9.37836 -8.86558 -8.30188 -8.21125 -7.29958 -6.41425 -4.07980 2.15496 2.21036 3.22336 3.26023 3.40967 4.21356 4.24213 4.57720 4.61047 4.68728 4.74781 4.86594 4.88324 5.00855 5.10982 5.11852 5.21844 5.28519 5.30561 5.33656 5.42526 5.49257 5.51912 5.54308 5.59215 5.66691 5.71178 5.74851 5.77950 5.79935 5.81400 5.84739 5.88615 5.90255 5.95313 6.00435 6.03093 6.14542 6.17804 6.21857 6.26899 6.36786 6.40450 6.60102 6.61023 6.81102 7.02341 7.17741 7.27803 7.31298 7.51526 7.63428 7.80767 8.04660 8.94084 9.57068 10.66326 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002659 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.310546 B =10525.898980 C =11537.418037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.090 4.090 6 H 0.094 0.906 7 C -0.148 4.148 8 C -0.100 4.100 9 C 0.079 3.921 10 H 0.077 0.923 11 C -0.184 4.184 12 N -0.675 5.675 13 C 0.117 3.883 14 C -0.174 4.174 15 C -0.053 4.053 16 C -0.194 4.194 17 C 0.161 3.839 18 O -0.218 6.218 19 C -0.389 4.389 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.222 4.222 28 C -0.068 4.068 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.341 0.659 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.279 0.721 52 H 0.131 0.869 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.504 -20.107 -5.884 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.108 4.108 6 H 0.112 0.888 7 C -0.205 4.205 8 C -0.138 4.138 9 C -0.031 4.031 10 H 0.095 0.905 11 C -0.243 4.243 12 N -0.306 5.306 13 C -0.011 4.011 14 C -0.175 4.175 15 C -0.072 4.072 16 C -0.213 4.213 17 C 0.109 3.891 18 O -0.123 6.123 19 C -0.465 4.465 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.241 4.241 28 C -0.087 4.087 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.159 0.841 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.131 0.869 50 H 0.133 0.867 51 H 0.089 0.911 52 H 0.149 0.851 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.649 -19.636 -6.595 25.371 hybrid contribution 0.345 0.328 0.648 0.804 sum -14.304 -19.308 -5.947 24.754 Atomic orbital electron populations 1.21852 0.95888 1.01173 1.01559 1.21146 0.95013 0.96791 0.98643 1.21870 1.01839 0.95465 1.01280 1.21706 0.95534 0.99547 0.97602 1.21142 0.95029 1.00962 0.93694 0.88756 1.21889 1.00862 0.99301 0.98460 1.21597 1.00923 0.96985 0.94284 1.21648 0.98487 0.90050 0.92881 0.90514 1.22524 1.01732 1.01212 0.98812 1.60664 1.05918 1.02632 1.61341 1.20636 0.96960 0.88281 0.95194 1.19200 1.01255 0.98014 0.99014 1.20451 0.97958 0.93042 0.95776 1.20218 0.98731 1.00197 1.02191 1.19142 0.90181 0.86823 0.92960 1.83575 1.46930 1.36348 1.45477 1.20762 1.15564 1.05936 1.04195 0.87681 1.24467 0.95037 0.96514 0.98004 1.69647 1.24327 1.24040 1.33855 0.86181 0.77828 0.80262 0.82639 1.19899 1.20805 1.18331 1.21228 1.04417 0.97247 1.01183 1.20638 0.94561 0.95752 0.97719 0.92855 0.93024 0.93157 0.91420 0.93408 0.92750 0.91809 0.92922 0.91974 0.93465 0.92832 0.93045 0.92126 0.92509 0.92452 0.92494 0.92788 0.84071 0.95546 0.91301 0.86942 0.86670 0.91073 0.85123 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.10 -0.82 2.78 -90.62 -0.25 -1.07 16 3 C -0.15 -1.39 8.96 37.16 0.33 -1.05 16 4 C -0.11 -0.89 4.03 -26.74 -0.11 -1.00 16 5 C -0.09 -0.80 2.19 -90.62 -0.20 -1.00 16 6 H 0.09 1.03 5.72 -51.93 -0.30 0.73 16 7 C -0.15 -1.23 8.82 37.16 0.33 -0.90 16 8 C -0.10 -0.86 4.36 -26.73 -0.12 -0.98 16 9 C 0.08 0.72 2.45 -67.72 -0.17 0.56 16 10 H 0.08 0.72 6.03 -51.93 -0.31 0.41 16 11 C -0.18 -1.56 9.16 37.15 0.34 -1.22 16 12 N -0.67 -7.48 5.50 -108.00 -0.59 -8.07 16 13 C 0.12 1.46 5.61 -4.98 -0.03 1.43 16 14 C -0.17 -2.75 5.40 -104.57 -0.56 -3.32 16 15 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 16 C -0.19 -3.83 9.99 -39.40 -0.39 -4.22 16 17 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 18 O -0.22 -5.78 8.59 0.04 0.00 -5.78 16 19 C -0.39 -10.98 9.95 30.89 0.31 -10.67 16 20 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 21 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.50 13.96 55.48 0.77 -24.73 16 23 Si 0.91 21.75 28.62 -169.99 -4.86 16.88 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 28 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.57 6.46 -51.93 -0.34 0.23 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.66 6.46 -51.93 -0.34 0.32 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.56 6.33 -51.93 -0.33 0.23 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.44 6.72 -51.93 -0.35 0.09 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 45 H 0.05 0.49 7.45 -51.93 -0.39 0.10 16 46 H 0.34 3.97 8.46 -39.29 -0.33 3.64 16 47 H 0.03 0.32 7.38 -51.93 -0.38 -0.06 16 48 H 0.07 0.82 8.00 -51.93 -0.42 0.41 16 49 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 50 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 51 H 0.28 7.46 8.31 -40.82 -0.34 7.13 16 52 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 53 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -28.02 411.84 -9.67 -37.69 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -9.53 Total: 4.86 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -1.66 Total: -27.07 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.18 Total: -32.80 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: 0.00 Total: -5.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -28.02 -9.67 -37.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780728707.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.182 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds