Wall clock time and date at job start Tue Mar 31 2020 12:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 C 1.52991 * 109.47372 * 120.00162 * 2 1 3 5 5 C 1.53000 * 109.47454 * 175.00255 * 4 2 1 6 6 H 1.09000 * 109.47343 * 54.99661 * 5 4 2 7 7 C 1.53003 * 109.47069 * 295.00036 * 5 4 2 8 8 C 1.53004 * 109.47511 * 175.00176 * 5 4 2 9 9 C 1.53000 * 109.46866 * 293.93412 * 8 5 4 10 10 H 1.09001 * 109.47019 * 57.10018 * 9 8 5 11 11 C 1.52993 * 109.46966 * 177.09882 * 9 8 5 12 12 N 1.46900 * 109.47479 * 297.10363 * 9 8 5 13 13 C 1.46890 * 111.00267 * 154.99829 * 12 9 8 14 14 C 1.50703 * 109.47169 * 179.97438 * 13 12 9 15 15 C 1.38307 * 119.92581 * 90.00295 * 14 13 12 16 16 C 1.38098 * 120.06363 * 180.30179 * 15 14 13 17 17 C 1.38878 * 119.93274 * 359.46800 * 16 15 14 18 18 O 1.35760 * 120.07042 * 180.25733 * 17 16 15 19 19 C 1.34824 * 116.99992 * 174.71856 * 18 17 16 20 20 H 1.08002 * 119.99743 * 5.08485 * 19 18 17 21 21 C 1.38653 * 119.99809 * 185.07760 * 19 18 17 22 22 N 1.31561 * 120.00043 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00112 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47186 * 89.99935 * 23 21 19 25 25 H 1.48502 * 109.47345 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.47137 * 329.99850 * 23 21 19 27 27 C 1.38875 * 119.86212 * 0.52935 * 17 16 15 28 28 C 1.38101 * 119.93229 * 359.72484 * 27 17 16 29 29 H 1.08997 * 109.47173 * 299.99583 * 1 2 3 30 30 H 1.08999 * 109.46812 * 59.99666 * 1 2 3 31 31 H 1.09000 * 109.46640 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47173 * 240.00417 * 2 1 3 33 33 H 1.08999 * 109.47677 * 299.99804 * 3 2 1 34 34 H 1.09002 * 109.46987 * 60.00720 * 3 2 1 35 35 H 1.08999 * 109.46960 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.47270 * 54.99942 * 4 2 1 37 37 H 1.09005 * 109.47616 * 295.00176 * 4 2 1 38 38 H 1.09001 * 109.46708 * 305.39634 * 7 5 4 39 39 H 1.08997 * 109.46952 * 65.38688 * 7 5 4 40 40 H 1.08995 * 109.47589 * 185.39247 * 7 5 4 41 41 H 1.08993 * 109.47213 * 173.93719 * 8 5 4 42 42 H 1.09001 * 109.47124 * 53.93332 * 8 5 4 43 43 H 1.08997 * 109.47588 * 300.00124 * 11 9 8 44 44 H 1.09001 * 109.47140 * 60.00211 * 11 9 8 45 45 H 1.09005 * 109.47127 * 180.02562 * 11 9 8 46 46 H 1.00899 * 110.99700 * 278.95539 * 12 9 8 47 47 H 1.09003 * 109.47440 * 60.00005 * 13 12 9 48 48 H 1.08997 * 109.47433 * 300.00095 * 13 12 9 49 49 H 1.07997 * 119.96508 * 0.02562 * 15 14 13 50 50 H 1.08000 * 120.03360 * 179.72533 * 16 15 14 51 51 H 0.96995 * 119.99924 * 179.97438 * 22 21 19 52 52 H 1.07997 * 120.03674 * 179.70603 * 27 17 16 53 53 H 1.07995 * 119.96821 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1879 6 1 3.9955 0.1612 1.0526 7 6 3.9651 -1.7251 0.0125 8 6 4.0853 -1.4394 2.4917 9 6 3.8182 -0.4732 3.6476 10 1 2.7516 -0.2550 3.6997 11 6 4.2729 -1.1118 4.9615 12 7 4.5627 0.7736 3.4257 13 6 3.9239 1.8990 4.1206 14 6 4.7143 3.1576 3.8708 15 6 4.4124 3.9577 2.7838 16 6 5.1389 5.1083 2.5487 17 6 6.1664 5.4675 3.4113 18 8 6.8790 6.6008 3.1857 19 6 7.7876 6.9485 4.1192 20 1 7.9803 6.2931 4.9556 21 6 8.4746 8.1474 4.0051 22 7 9.3616 8.4865 4.9157 23 14 8.1409 9.2812 2.5586 24 1 7.0506 10.2258 2.9113 25 1 9.3721 10.0454 2.2342 26 1 7.7345 8.4739 1.3803 27 6 6.4670 4.6620 4.5019 28 6 5.7403 3.5098 4.7287 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1370 38 1 3.4577 -2.6860 0.0979 39 1 3.6787 -1.2449 -0.9231 40 1 5.0437 -1.8812 0.0255 41 1 5.1573 -1.6173 2.4072 42 1 3.5742 -2.3833 2.6817 43 1 3.7205 -2.0369 5.1262 44 1 5.3396 -1.3300 4.9094 45 1 4.0822 -0.4236 5.7850 46 1 5.5264 0.6743 3.7078 47 1 3.8942 1.6955 5.1911 48 1 2.9080 2.0274 3.7470 49 1 3.6106 3.6799 2.1158 50 1 4.9056 5.7304 1.6972 51 1 9.8425 9.3251 4.8356 52 1 7.2685 4.9362 5.1718 53 1 5.9734 2.8833 5.5769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000780728707.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:41 Heat of formation + Delta-G solvation = -54.108986 kcal Electronic energy + Delta-G solvation = -27169.335014 eV Core-core repulsion = 23618.590568 eV Total energy + Delta-G solvation = -3550.744446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89807 -39.56439 -38.54137 -37.11363 -34.58523 -34.21945 -32.40379 -31.77842 -29.80875 -27.92876 -27.67633 -27.40339 -27.09520 -25.15499 -23.64865 -22.12124 -21.90784 -21.31389 -20.00150 -19.79167 -19.09248 -16.91729 -16.63660 -16.48816 -16.19311 -15.95008 -15.63440 -15.55212 -15.27475 -15.12142 -14.78864 -14.51874 -14.37408 -14.14401 -14.01470 -13.97393 -13.87577 -13.38985 -13.30939 -13.03611 -12.97465 -12.84304 -12.78466 -12.51281 -12.42289 -12.32501 -12.18951 -12.03389 -11.96394 -11.84326 -11.81656 -11.53599 -11.26126 -11.00547 -10.91273 -10.89666 -10.86468 -9.77469 -9.20620 -8.92271 -8.50037 -6.22311 0.60078 0.65860 1.31158 1.35244 1.51949 2.28148 2.75110 3.04960 3.15843 3.54838 3.89989 3.95833 4.06191 4.07396 4.09536 4.20909 4.21797 4.35381 4.41791 4.50684 4.56762 4.61116 4.62875 4.66594 4.77517 4.81978 4.85309 4.87210 4.88341 4.96095 5.02304 5.04558 5.07892 5.13224 5.15968 5.18826 5.21773 5.28662 5.30282 5.33221 5.36041 5.39475 5.47544 5.54110 5.59442 5.61007 5.73136 5.78676 5.84368 5.88703 5.92689 6.23402 6.32187 6.57865 6.84652 7.60154 8.61742 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.016169 B = 0.002659 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.310546 B =10525.898980 C =11537.418037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.086 4.086 6 H 0.075 0.925 7 C -0.146 4.146 8 C -0.096 4.096 9 C 0.084 3.916 10 H 0.081 0.919 11 C -0.181 4.181 12 N -0.679 5.679 13 C 0.123 3.877 14 C -0.145 4.145 15 C -0.047 4.047 16 C -0.193 4.193 17 C 0.119 3.881 18 O -0.247 6.247 19 C -0.398 4.398 20 H 0.080 0.920 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.267 1.267 26 H -0.263 1.263 27 C -0.237 4.237 28 C -0.067 4.067 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.338 0.662 47 H 0.037 0.963 48 H 0.084 0.916 49 H 0.147 0.853 50 H 0.125 0.875 51 H 0.284 0.716 52 H 0.105 0.895 53 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.181 -22.412 -6.934 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.138 4.138 5 C -0.105 4.105 6 H 0.093 0.907 7 C -0.203 4.203 8 C -0.134 4.134 9 C -0.025 4.025 10 H 0.099 0.901 11 C -0.239 4.239 12 N -0.309 5.309 13 C -0.005 4.005 14 C -0.146 4.146 15 C -0.065 4.065 16 C -0.212 4.212 17 C 0.070 3.930 18 O -0.155 6.155 19 C -0.474 4.474 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.257 4.257 28 C -0.086 4.086 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.156 0.844 47 H 0.056 0.944 48 H 0.102 0.898 49 H 0.165 0.835 50 H 0.143 0.857 51 H 0.094 0.906 52 H 0.123 0.877 53 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.357 -21.987 -7.642 29.036 hybrid contribution 0.972 0.697 0.997 1.558 sum -16.385 -21.290 -6.645 27.674 Atomic orbital electron populations 1.21833 0.95247 1.01668 1.01566 1.21131 0.95514 0.96099 0.98718 1.21848 1.01061 0.96211 1.01161 1.21649 0.94978 0.99858 0.97326 1.21069 0.95375 0.99995 0.94041 0.90687 1.21865 1.00654 0.99601 0.98209 1.21567 1.00655 0.97320 0.93870 1.21651 0.98328 0.89118 0.93440 0.90085 1.22480 1.01768 1.01606 0.98096 1.60626 1.05919 1.03233 1.61143 1.20615 0.96866 0.86847 0.96220 1.19680 0.99332 0.98559 0.97001 1.20862 0.97870 0.91608 0.96205 1.20516 0.97793 1.01216 1.01719 1.19676 0.91708 0.86707 0.94863 1.83516 1.48033 1.38431 1.45474 1.20700 1.16474 1.06036 1.04237 0.90240 1.25281 0.94917 0.97945 1.00763 1.69731 1.25898 1.25062 1.35876 0.85215 0.78315 0.78201 0.78975 1.19041 1.19200 1.18757 1.21234 1.04750 0.98845 1.00836 1.20905 0.94286 0.94544 0.98865 0.92957 0.92937 0.92440 0.91470 0.93347 0.93035 0.92915 0.92176 0.92285 0.92608 0.92990 0.93515 0.92790 0.91282 0.91276 0.92727 0.93186 0.84382 0.94443 0.89816 0.83497 0.85703 0.90600 0.87717 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.10 -1.38 2.78 -10.80 -0.03 -1.41 16 3 C -0.15 -2.42 8.96 71.98 0.64 -1.77 16 4 C -0.10 -1.39 4.03 30.59 0.12 -1.27 16 5 C -0.09 -1.32 2.19 -10.79 -0.02 -1.34 16 6 H 0.07 1.47 5.72 -2.39 -0.01 1.46 16 7 C -0.15 -2.12 8.82 71.98 0.63 -1.49 16 8 C -0.10 -1.38 4.36 30.60 0.13 -1.24 16 9 C 0.08 1.26 2.45 44.91 0.11 1.37 16 10 H 0.08 1.19 6.03 -2.39 -0.01 1.18 16 11 C -0.18 -2.50 9.16 71.98 0.66 -1.84 16 12 N -0.68 -12.91 5.50 -495.61 -2.73 -15.63 16 13 C 0.12 2.57 5.61 85.56 0.48 3.05 16 14 C -0.14 -4.18 5.40 -19.83 -0.11 -4.28 16 15 C -0.05 -1.44 9.69 22.25 0.22 -1.22 16 16 C -0.19 -7.45 9.99 22.39 0.22 -7.23 16 17 C 0.12 5.64 6.65 22.58 0.15 5.79 16 18 O -0.25 -13.62 8.59 -22.79 -0.20 -13.81 16 19 C -0.40 -23.79 9.95 67.92 0.68 -23.11 16 20 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 21 C 0.01 0.53 5.49 84.83 0.47 1.00 16 22 N -0.92 -55.85 13.96 21.61 0.30 -55.55 16 23 Si 0.97 46.02 28.62 68.60 1.96 47.98 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 27 C -0.24 -10.47 9.17 22.39 0.21 -10.27 16 28 C -0.07 -2.29 9.69 22.25 0.22 -2.07 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.98 6.46 -2.39 -0.02 0.96 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 0.99 6.46 -2.39 -0.02 0.97 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 0.86 6.33 -2.38 -0.02 0.85 16 38 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.77 6.72 -2.39 -0.02 0.75 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 45 H 0.05 0.74 7.45 -2.38 -0.02 0.72 16 46 H 0.34 6.95 8.46 -89.69 -0.76 6.19 16 47 H 0.04 0.74 7.38 -2.39 -0.02 0.73 16 48 H 0.08 1.59 8.00 -2.39 -0.02 1.57 16 49 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 50 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 51 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 52 H 0.10 5.12 5.64 -2.91 -0.02 5.11 16 53 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.70 411.84 4.89 -58.81 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.11 Total: 26.77 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 5.44 Total: -48.56 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -2.42 Total: -71.18 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.20 Total: -13.81 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.96 Total: 47.98 kcal Total: -63.70 4.89 -58.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780728707.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.698 kcal (2) G-P(sol) polarization free energy of solvation -63.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds