Wall clock time and date at job start Tue Mar 31 2020 13:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47056 * 240.00346 * 3 2 1 5 5 H 1.48499 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47079 * 120.00545 * 3 2 1 7 7 C 1.38832 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00441 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.34781 * 116.99602 * 180.02562 * 9 7 2 11 11 O 1.21566 * 120.00507 * 0.02562 * 10 9 7 12 12 C 1.47250 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.39007 * 120.69896 * 98.38790 * 12 10 9 14 14 C 1.38776 * 120.56197 * 179.74529 * 13 12 10 15 15 C 1.36164 * 121.83968 * 0.27866 * 14 13 12 16 16 C 1.40484 * 120.68089 * 359.95393 * 15 14 13 17 17 C 1.40569 * 121.32884 * 180.02562 * 16 15 14 18 18 C 1.36165 * 119.64938 * 179.97438 * 17 16 15 19 19 C 1.39268 * 121.01401 * 359.97438 * 18 17 16 20 20 C 1.36412 * 120.89991 * 359.97438 * 19 18 17 21 21 Br 1.89101 * 120.20280 * 180.02562 * 20 19 18 22 22 C 1.40072 * 119.60093 * 0.04147 * 20 19 18 23 23 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.72200 * 0.02777 * 13 12 10 25 25 H 1.07995 * 119.08105 * 180.25696 * 14 13 12 26 26 H 1.07999 * 119.65552 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.17506 * 359.97438 * 17 16 15 28 28 H 1.08001 * 119.49234 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.54648 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0083 -1.2023 -0.0005 8 1 3.0883 -1.2023 -0.0010 9 8 1.3341 -2.3700 -0.0005 10 6 2.0682 -3.5003 -0.0005 11 8 3.2822 -3.4367 -0.0001 12 6 1.3998 -4.8123 -0.0011 13 6 1.2334 -5.5235 -1.1838 14 6 0.6077 -6.7622 -1.1803 15 6 0.1316 -7.3232 -0.0346 16 6 0.2608 -6.6587 1.1964 17 6 -0.2252 -7.2255 2.3874 18 6 -0.0812 -6.5516 3.5618 19 6 0.5418 -5.3067 3.6031 20 6 1.0260 -4.7277 2.4669 21 35 1.8692 -3.0369 2.5458 22 6 0.8946 -5.3929 1.2412 23 1 -0.4850 0.8401 0.0004 24 1 1.5983 -5.1107 -2.1127 25 1 0.4948 -7.2959 -2.1123 26 1 -0.3500 -8.2891 -0.0726 27 1 -0.7103 -8.1903 2.3711 28 1 -0.4559 -6.9892 4.4754 29 1 0.6437 -4.7932 4.5478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803947789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:31 Heat of formation + Delta-G solvation = -8.731590 kcal Electronic energy + Delta-G solvation = -18457.234020 eV Core-core repulsion = 15357.854630 eV Total energy + Delta-G solvation = -3099.379390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 319.983 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18272 -38.64810 -36.29095 -34.95942 -32.96443 -32.05486 -30.38026 -30.20198 -28.42344 -25.59304 -23.78697 -22.90838 -22.25603 -19.89308 -17.69346 -17.48961 -17.05555 -16.36327 -15.80949 -14.90476 -14.66495 -14.38021 -13.97965 -13.59839 -13.56498 -13.36547 -12.75809 -12.49480 -11.93616 -11.57651 -11.50654 -11.21479 -10.97653 -10.92220 -10.68513 -10.46016 -10.14097 -9.78423 -9.14209 -8.99350 -8.90359 -8.56417 -8.45549 -7.62488 -6.36903 -4.00386 0.47870 1.10848 1.96901 2.13248 3.01782 3.13235 3.19749 3.23022 3.51785 3.94107 4.13741 4.51552 4.74912 4.84639 4.95357 5.15177 5.19602 5.21321 5.41464 5.48857 5.55684 5.92373 6.02294 6.13918 6.24121 6.36448 6.50042 6.62020 6.73735 6.88077 7.03217 7.42585 7.99890 8.75061 9.11154 9.93167 10.80296 Molecular weight = 319.98amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.006632 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.178764 B = 4220.887950 C = 4991.156502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.046 3.954 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.370 4.370 8 H 0.093 0.907 9 O -0.198 6.198 10 C 0.444 3.556 11 O -0.542 6.542 12 C -0.052 4.052 13 C -0.083 4.083 14 C -0.108 4.108 15 C -0.106 4.106 16 C -0.046 4.046 17 C -0.099 4.099 18 C -0.115 4.115 19 C -0.093 4.093 20 C -0.084 4.084 21 Br 0.016 6.984 22 C -0.014 4.014 23 H 0.269 0.731 24 H 0.133 0.867 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -12.753 4.961 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.159 4.159 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.446 4.446 8 H 0.111 0.889 9 O -0.105 6.105 10 C 0.290 3.710 11 O -0.439 6.439 12 C -0.053 4.053 13 C -0.101 4.101 14 C -0.126 4.126 15 C -0.124 4.124 16 C -0.047 4.047 17 C -0.117 4.117 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.164 4.164 21 Br 0.104 6.896 22 C -0.016 4.016 23 H 0.079 0.921 24 H 0.151 0.849 25 H 0.146 0.854 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.635 -11.897 5.013 13.013 hybrid contribution 0.177 0.436 0.000 0.471 sum -1.458 -11.461 5.013 12.594 Atomic orbital electron populations 1.69976 1.05888 1.27587 1.45636 1.25257 0.95674 0.98485 0.96480 0.85900 0.78842 0.80074 0.79393 1.19395 1.20320 1.19618 1.21049 0.92269 0.79957 1.51365 0.88945 1.84094 1.38584 1.12519 1.75289 1.20071 0.86296 0.85401 0.79254 1.90682 1.14371 1.87492 1.51390 1.20604 0.97898 0.93883 0.92936 1.21188 0.97506 0.94441 0.96988 1.20658 0.98167 0.95211 0.98527 1.20922 1.00316 0.99757 0.91452 1.17900 0.98992 0.93311 0.94513 1.21048 0.99267 0.99799 0.91604 1.20796 0.99552 0.94691 0.98357 1.20893 0.97563 0.95609 0.97297 1.22173 1.02956 0.96021 0.95224 1.97056 1.77488 1.17422 1.97635 1.18609 0.97759 0.93845 0.91392 0.92095 0.84944 0.85402 0.85323 0.85088 0.85323 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.80 13.67 55.49 0.76 -24.04 15 2 C 0.05 1.28 5.50 -17.51 -0.10 1.19 15 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.37 -10.70 8.53 30.95 0.26 -10.43 15 8 H 0.09 2.73 6.86 -52.49 -0.36 2.37 15 9 O -0.20 -5.66 8.34 -21.71 -0.18 -5.84 15 10 C 0.44 11.45 4.15 34.39 0.14 11.60 15 11 O -0.54 -14.96 15.78 -19.32 -0.30 -15.26 15 12 C -0.05 -1.12 5.93 -102.78 -0.61 -1.73 15 13 C -0.08 -1.46 9.77 -39.10 -0.38 -1.85 15 14 C -0.11 -1.47 9.88 -40.13 -0.40 -1.87 15 15 C -0.11 -1.39 9.71 -39.48 -0.38 -1.77 15 16 C -0.05 -0.72 5.74 -106.88 -0.61 -1.33 15 17 C -0.10 -1.23 9.78 -39.45 -0.39 -1.61 15 18 C -0.12 -1.43 9.94 -39.94 -0.40 -1.83 15 19 C -0.09 -1.43 9.69 -39.86 -0.39 -1.81 15 20 C -0.08 -1.63 6.22 -39.55 -0.25 -1.88 15 21 Br 0.02 0.35 26.72 -68.01 -1.82 -1.47 15 22 C -0.01 -0.28 5.90 -104.74 -0.62 -0.90 15 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 24 H 0.13 2.18 8.06 -52.48 -0.42 1.76 15 25 H 0.13 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.13 1.18 8.06 -52.49 -0.42 0.76 15 27 H 0.13 1.15 8.06 -52.49 -0.42 0.72 15 28 H 0.13 1.14 8.06 -52.49 -0.42 0.71 15 29 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 LS Contribution 279.63 15.07 4.21 4.21 Total: -1.00 -33.46 279.63 -8.49 -41.95 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -2.03 Total: -1.63 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -4.11 Total: -14.22 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.49 Total: -21.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -1.82 Total: -1.47 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.46 -8.49 -41.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803947789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.216 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds