Wall clock time and date at job start Tue Mar 31 2020 13:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47056 * 240.00346 * 3 2 1 5 5 H 1.48499 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47079 * 120.00545 * 3 2 1 7 7 C 1.38832 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00441 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99548 * 359.97438 * 7 2 1 10 10 C 1.34781 * 116.99602 * 180.02562 * 9 7 2 11 11 O 1.21566 * 120.00507 * 0.02562 * 10 9 7 12 12 C 1.47250 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.39007 * 120.69896 * 98.38790 * 12 10 9 14 14 C 1.38776 * 120.56197 * 179.74529 * 13 12 10 15 15 C 1.36164 * 121.83968 * 0.27866 * 14 13 12 16 16 C 1.40484 * 120.68089 * 359.95393 * 15 14 13 17 17 C 1.40569 * 121.32884 * 180.02562 * 16 15 14 18 18 C 1.36165 * 119.64938 * 179.97438 * 17 16 15 19 19 C 1.39268 * 121.01401 * 359.97438 * 18 17 16 20 20 C 1.36412 * 120.89991 * 359.97438 * 19 18 17 21 21 Br 1.89101 * 120.20280 * 180.02562 * 20 19 18 22 22 C 1.40072 * 119.60093 * 0.04147 * 20 19 18 23 23 H 0.97003 * 120.00016 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.72200 * 0.02777 * 13 12 10 25 25 H 1.07995 * 119.08105 * 180.25696 * 14 13 12 26 26 H 1.07999 * 119.65552 * 179.97438 * 15 14 13 27 27 H 1.08002 * 120.17506 * 359.97438 * 17 16 15 28 28 H 1.08001 * 119.49234 * 179.97438 * 18 17 16 29 29 H 1.08000 * 119.54648 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0083 -1.2023 -0.0005 8 1 3.0883 -1.2023 -0.0010 9 8 1.3341 -2.3700 -0.0005 10 6 2.0682 -3.5003 -0.0005 11 8 3.2822 -3.4367 -0.0001 12 6 1.3998 -4.8123 -0.0011 13 6 1.2334 -5.5235 -1.1838 14 6 0.6077 -6.7622 -1.1803 15 6 0.1316 -7.3232 -0.0346 16 6 0.2608 -6.6587 1.1964 17 6 -0.2252 -7.2255 2.3874 18 6 -0.0812 -6.5516 3.5618 19 6 0.5418 -5.3067 3.6031 20 6 1.0260 -4.7277 2.4669 21 35 1.8692 -3.0369 2.5458 22 6 0.8946 -5.3929 1.2412 23 1 -0.4850 0.8401 0.0004 24 1 1.5983 -5.1107 -2.1127 25 1 0.4948 -7.2959 -2.1123 26 1 -0.3500 -8.2891 -0.0726 27 1 -0.7103 -8.1903 2.3711 28 1 -0.4559 -6.9892 4.4754 29 1 0.6437 -4.7932 4.5478 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803947789.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:31 Heat of formation + Delta-G solvation = -28.993434 kcal Electronic energy + Delta-G solvation = -18458.112639 eV Core-core repulsion = 15357.854630 eV Total energy + Delta-G solvation = -3100.258010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 319.983 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.55074 -40.46897 -37.54960 -36.94677 -34.38760 -34.07109 -31.71135 -31.43337 -29.72981 -27.60565 -25.27581 -24.08813 -23.61431 -21.49898 -19.80083 -18.87604 -18.50274 -17.69094 -17.38360 -16.52466 -16.32085 -16.25144 -15.37558 -14.93404 -14.81256 -14.58862 -14.36279 -13.81485 -13.60170 -13.15641 -13.06218 -12.75888 -12.41184 -12.22756 -12.18966 -12.09788 -11.97139 -11.62428 -11.02012 -10.75678 -10.56309 -10.36287 -9.74379 -8.88676 -8.47543 -6.21536 -0.73203 -0.06598 0.71120 0.73039 1.29602 1.30014 1.44168 1.63738 1.89581 2.12417 2.76997 2.96845 3.03981 3.60273 3.70648 3.85919 4.11282 4.21191 4.24395 4.40485 4.46069 4.68260 4.81713 4.94944 5.03454 5.14477 5.21161 5.27635 5.39427 5.45853 5.70650 5.89228 5.92332 6.69459 6.97152 7.86398 8.72340 Molecular weight = 319.98amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.006632 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.178764 B = 4220.887950 C = 4991.156502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.003 3.997 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.073 0.927 9 O -0.225 6.225 10 C 0.456 3.544 11 O -0.576 6.576 12 C -0.125 4.125 13 C -0.074 4.074 14 C -0.119 4.119 15 C -0.071 4.071 16 C -0.067 4.067 17 C -0.070 4.070 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.133 4.133 21 Br -0.040 7.040 22 C -0.034 4.034 23 H 0.276 0.724 24 H 0.128 0.872 25 H 0.173 0.827 26 H 0.187 0.813 27 H 0.188 0.812 28 H 0.177 0.823 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -16.527 5.520 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.198 4.198 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.090 0.910 9 O -0.132 6.132 10 C 0.304 3.696 11 O -0.475 6.475 12 C -0.126 4.126 13 C -0.092 4.092 14 C -0.136 4.136 15 C -0.089 4.089 16 C -0.068 4.068 17 C -0.087 4.087 18 C -0.136 4.136 19 C -0.098 4.098 20 C -0.212 4.212 21 Br 0.048 6.952 22 C -0.036 4.036 23 H 0.085 0.915 24 H 0.146 0.854 25 H 0.190 0.810 26 H 0.205 0.795 27 H 0.205 0.795 28 H 0.194 0.806 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.623 -15.692 5.570 17.040 hybrid contribution 0.705 1.254 -0.103 1.442 sum -2.918 -14.437 5.468 15.711 Atomic orbital electron populations 1.70068 1.07390 1.28890 1.46870 1.26274 0.96637 1.01555 0.95358 0.84955 0.77916 0.75646 0.79626 1.18529 1.18262 1.19236 1.21050 0.91572 0.81120 1.53182 0.90952 1.84119 1.39388 1.13267 1.76468 1.20918 0.86093 0.86342 0.76251 1.90609 1.16097 1.88323 1.52500 1.20535 1.03342 0.92796 0.95949 1.21484 0.96497 0.95786 0.95481 1.21070 0.97734 0.93621 1.01171 1.21610 0.96871 1.00765 0.89619 1.18410 0.99130 0.91967 0.97292 1.21702 0.96237 1.01025 0.89778 1.21310 0.98545 0.93028 1.00685 1.21291 0.95483 0.96663 0.96365 1.22158 1.06946 0.94808 0.97288 1.96959 1.78928 1.21819 1.97526 1.18855 0.98749 0.95810 0.90201 0.91513 0.85362 0.80956 0.79536 0.79506 0.80562 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.25 13.67 21.64 0.30 -53.95 15 2 C 0.00 0.15 5.50 84.90 0.47 0.61 15 3 Si 1.00 45.27 29.55 68.60 2.03 47.30 15 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 15 5 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.39 -24.38 8.53 67.96 0.58 -23.80 15 8 H 0.07 4.64 6.86 -2.91 -0.02 4.62 15 9 O -0.22 -13.86 8.34 11.05 0.09 -13.77 15 10 C 0.46 25.42 4.15 70.19 0.29 25.71 15 11 O -0.58 -34.58 15.78 19.62 0.31 -34.27 15 12 C -0.12 -5.64 5.93 -18.67 -0.11 -5.75 15 13 C -0.07 -2.63 9.77 22.58 0.22 -2.41 15 14 C -0.12 -2.81 9.88 21.92 0.22 -2.59 15 15 C -0.07 -1.45 9.71 22.33 0.22 -1.23 15 16 C -0.07 -1.82 5.74 -21.32 -0.12 -1.94 15 17 C -0.07 -1.29 9.78 22.36 0.22 -1.07 15 18 C -0.12 -2.31 9.94 22.03 0.22 -2.09 15 19 C -0.08 -2.27 9.69 22.09 0.21 -2.05 15 20 C -0.13 -5.27 6.22 22.29 0.14 -5.13 15 21 Br -0.04 -1.94 26.72 -20.37 -0.54 -2.49 15 22 C -0.03 -1.35 5.90 -19.94 -0.12 -1.46 15 23 H 0.28 15.28 8.31 -92.71 -0.77 14.51 15 24 H 0.13 4.42 8.06 -2.91 -0.02 4.39 15 25 H 0.17 2.53 8.06 -2.91 -0.02 2.50 15 26 H 0.19 1.70 8.06 -2.91 -0.02 1.68 15 27 H 0.19 1.46 8.06 -2.91 -0.02 1.43 15 28 H 0.18 1.86 8.06 -2.91 -0.02 1.84 15 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -83.49 279.63 5.80 -77.69 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 1.19 Total: 2.70 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 2.43 Total: -23.21 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.30 Total: -53.95 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: 0.40 Total: -48.04 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 35 Polarization: -1.94 SS G_CDS: -0.54 Total: -2.49 kcal Total: -83.49 5.80 -77.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803947789.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.697 kcal (2) G-P(sol) polarization free energy of solvation -83.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds