Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47256 * 2 1 4 4 H 1.08992 * 109.47346 * 303.29383 * 3 2 1 5 5 C 1.50701 * 109.46794 * 183.29107 * 3 2 1 6 6 C 1.38236 * 120.00432 * 299.69841 * 5 3 2 7 7 C 1.38233 * 119.99737 * 179.79115 * 6 5 3 8 8 C 1.38230 * 120.00325 * 0.43869 * 7 6 5 9 9 C 1.38236 * 120.00137 * 359.81569 * 8 7 6 10 10 C 1.38234 * 119.99851 * 359.97277 * 9 8 7 11 11 N 1.46899 * 109.47148 * 63.29545 * 3 2 1 12 12 C 1.46896 * 111.00281 * 33.37764 * 11 3 2 13 13 C 1.53000 * 109.47394 * 197.76458 * 12 11 3 14 14 O 1.42900 * 109.47190 * 64.99626 * 13 12 11 15 15 C 1.42898 * 114.00053 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47144 * 180.02562 * 15 14 13 17 17 H 1.07993 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00169 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46910 * 59.99598 * 20 18 16 22 22 H 1.48494 * 109.47311 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46991 * 299.99910 * 20 18 16 24 24 C 1.46902 * 111.00153 * 157.33507 * 11 3 2 25 25 C 1.52992 * 109.47451 * 86.12056 * 24 11 3 26 26 C 1.52998 * 109.47399 * 171.92678 * 25 24 11 27 27 C 1.52995 * 109.47317 * 291.93258 * 25 24 11 28 28 H 1.09002 * 109.47606 * 185.42737 * 1 2 3 29 29 H 1.09005 * 109.47151 * 305.42377 * 1 2 3 30 30 H 1.09003 * 109.47117 * 65.41949 * 1 2 3 31 31 H 1.08995 * 109.46605 * 239.99755 * 2 1 3 32 32 H 1.09001 * 109.46787 * 120.00243 * 2 1 3 33 33 H 1.07996 * 119.99755 * 359.97438 * 6 5 3 34 34 H 1.08006 * 119.99695 * 180.27265 * 7 6 5 35 35 H 1.08001 * 120.00129 * 179.84236 * 8 7 6 36 36 H 1.07997 * 120.00199 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.00203 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47218 * 77.75977 * 12 11 3 39 39 H 1.09001 * 109.47481 * 317.76690 * 12 11 3 40 40 H 1.08997 * 109.47336 * 185.00072 * 13 12 11 41 41 H 1.09003 * 109.46830 * 304.99965 * 13 12 11 42 42 H 1.09002 * 109.47518 * 300.00544 * 15 14 13 43 43 H 1.09003 * 109.47006 * 60.00200 * 15 14 13 44 44 H 0.97003 * 120.00175 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.47395 * 206.12588 * 24 11 3 46 46 H 1.09005 * 109.46958 * 326.11966 * 24 11 3 47 47 H 1.09005 * 109.46981 * 51.93416 * 25 24 11 48 48 H 1.09000 * 109.47067 * 60.00106 * 26 25 24 49 49 H 1.08996 * 109.47455 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.47118 * 300.00582 * 26 25 24 51 51 H 1.08997 * 109.47784 * 71.38404 * 27 25 24 52 52 H 1.09002 * 109.46969 * 191.38195 * 27 25 24 53 53 H 1.09003 * 109.47140 * 311.37676 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6293 1.9730 -0.8589 5 6 3.5448 1.4431 -0.0816 6 6 4.2910 0.8305 0.9078 7 6 5.6712 0.8275 0.8306 8 6 6.3054 1.4448 -0.2311 9 6 5.5595 2.0619 -1.2178 10 6 4.1792 2.0612 -1.1430 11 7 1.6164 2.1116 1.2372 12 6 1.5784 1.1660 2.3607 13 6 0.7348 1.7537 3.4938 14 8 -0.6211 1.8815 3.0611 15 6 -1.4983 2.4235 4.0504 16 6 -2.8942 2.5126 3.4896 17 1 -3.0916 2.1882 2.4786 18 6 -3.9190 3.0093 4.2668 19 7 -3.6785 3.4049 5.4977 20 14 -5.6495 3.1191 3.5718 21 1 -6.1156 1.7625 3.1876 22 1 -6.5610 3.6825 4.5998 23 1 -5.6476 3.9990 2.3756 24 6 2.4862 3.2557 1.5413 25 6 1.9747 4.4952 0.8047 26 6 2.7533 5.7255 1.2748 27 6 2.1723 4.3114 -0.7012 28 1 -0.3634 -1.0230 0.0972 29 1 -0.3634 0.5957 0.8375 30 1 -0.3633 0.4275 -0.9346 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7955 0.3518 1.7395 34 1 6.2540 0.3450 1.6014 35 1 7.3838 1.4446 -0.2901 36 1 6.0550 2.5439 -2.0476 37 1 3.5963 2.5430 -1.9141 38 1 2.5922 0.9857 2.7184 39 1 1.1376 0.2257 2.0296 40 1 0.7791 1.0935 4.3599 41 1 1.1237 2.7353 3.7648 42 1 -1.5002 1.7769 4.9279 43 1 -1.1559 3.4189 4.3335 44 1 -4.3996 3.7540 6.0446 45 1 2.4790 3.4424 2.6152 46 1 3.5035 3.0348 1.2179 47 1 0.9146 4.6329 1.0179 48 1 3.8133 5.5879 1.0617 49 1 2.3885 6.6087 0.7504 50 1 2.6125 5.8565 2.3478 51 1 1.4671 3.5677 -1.0722 52 1 1.9999 5.2604 -1.2088 53 1 3.1908 3.9751 -0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815070662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = -13.318383 kcal Electronic energy + Delta-G solvation = -28820.619684 eV Core-core repulsion = 25271.644051 eV Total energy + Delta-G solvation = -3548.975633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66462 -37.95152 -36.31451 -35.23817 -32.85240 -32.22627 -31.32161 -30.96327 -28.92319 -27.15188 -26.70427 -26.22914 -24.20278 -23.06526 -22.22726 -22.03343 -21.35985 -19.96708 -19.34453 -16.94152 -16.67339 -16.19256 -15.65649 -15.64494 -15.32878 -14.78405 -14.57161 -14.29979 -14.08091 -14.05474 -13.71413 -13.52436 -13.33416 -12.99010 -12.66792 -12.46736 -12.34663 -12.16053 -11.95942 -11.78600 -11.72114 -11.48572 -11.31925 -11.17027 -11.07525 -10.89797 -10.77877 -10.72869 -10.57596 -10.52648 -10.34629 -10.22959 -9.93927 -9.89206 -9.02175 -9.01433 -8.73150 -8.69651 -8.04857 -7.92626 -6.03922 -4.04514 1.21237 1.25854 3.36523 3.38902 3.43060 3.61706 4.12758 4.40795 4.61861 4.68840 4.83341 4.86895 4.98154 5.03645 5.14704 5.15649 5.20566 5.32600 5.33749 5.35664 5.42197 5.55882 5.63055 5.67841 5.72768 5.75624 5.81689 5.82545 5.89220 5.90044 5.94394 6.01425 6.05676 6.11726 6.11895 6.17750 6.24223 6.29441 6.32709 6.34880 6.37085 6.41880 6.47017 6.61725 6.68375 6.86523 6.89689 7.20428 7.37067 7.41117 7.53051 7.87694 8.25335 8.71318 9.10482 9.60073 11.07748 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.003356 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.645129 B = 8342.350431 C = 8728.228856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C 0.115 3.885 4 H 0.097 0.903 5 C -0.092 4.092 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.114 4.114 11 N -0.501 5.501 12 C 0.036 3.964 13 C 0.070 3.930 14 O -0.377 6.377 15 C 0.196 3.804 16 C -0.508 4.508 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.050 3.950 25 C -0.089 4.089 26 C -0.144 4.144 27 C -0.157 4.157 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.033 0.967 42 H 0.000 1.000 43 H 0.001 0.999 44 H 0.263 0.737 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.083 0.917 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.045 0.955 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -3.227 -12.178 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C 0.007 3.993 4 H 0.115 0.885 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.138 4.138 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.132 4.132 11 N -0.223 5.223 12 C -0.092 4.092 13 C -0.009 4.009 14 O -0.296 6.296 15 C 0.122 3.878 16 C -0.546 4.546 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.541 5.541 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.202 4.202 27 C -0.214 4.214 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.057 0.943 39 H 0.116 0.884 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.064 0.936 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.240 -3.027 -12.255 23.011 hybrid contribution 0.125 -0.004 0.292 0.317 sum 19.364 -3.031 -11.963 22.963 Atomic orbital electron populations 1.21894 0.93901 1.01772 1.04017 1.21847 0.97714 0.94756 1.01675 1.21196 0.87428 0.95436 0.95280 0.88526 1.20655 0.97551 0.96662 0.94539 1.21256 0.93977 0.99789 0.98931 1.21120 0.94607 0.99729 0.98298 1.21096 0.99618 0.98893 0.94974 1.21125 0.94108 0.99776 0.98885 1.21164 0.94490 0.99218 0.98364 1.62252 1.50340 1.07812 1.01919 1.22681 0.97234 0.97511 0.91730 1.22234 0.86114 0.98119 0.94383 1.87906 1.15506 1.84868 1.41363 1.20130 0.88417 0.92226 0.87074 1.21016 0.91739 1.41648 1.00223 0.91602 1.24934 0.99398 0.95393 0.94818 1.69955 1.32955 1.43125 1.08015 0.86437 0.83209 0.78506 0.78553 1.20080 1.21295 1.20039 1.22426 0.94654 0.90827 0.99870 1.21031 1.01330 0.93492 0.94912 1.21798 0.99606 0.97652 1.01149 1.22271 1.01709 1.01271 0.96147 0.93477 0.88795 0.93178 0.92186 0.91477 0.85887 0.86382 0.86497 0.86366 0.85715 0.94308 0.88365 0.94728 0.94866 0.98243 0.98072 0.92751 0.91549 0.93219 0.89859 0.93428 0.92812 0.92823 0.91878 0.93576 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.26 37.16 0.34 -1.85 16 2 C -0.12 -1.46 4.63 -26.73 -0.12 -1.58 16 3 C 0.11 1.39 1.78 -68.87 -0.12 1.27 16 4 H 0.10 1.20 5.19 -51.93 -0.27 0.93 16 5 C -0.09 -1.02 2.62 -104.62 -0.27 -1.29 16 6 C -0.12 -1.31 7.62 -39.58 -0.30 -1.61 16 7 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 8 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.11 -1.15 7.31 -39.58 -0.29 -1.43 16 11 N -0.50 -7.16 3.97 -228.05 -0.90 -8.06 16 12 C 0.04 0.52 3.26 -3.83 -0.01 0.51 16 13 C 0.07 1.29 6.08 37.16 0.23 1.52 16 14 O -0.38 -8.96 9.69 -35.23 -0.34 -9.30 16 15 C 0.20 5.42 5.69 36.00 0.20 5.62 16 16 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 17 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 24 C 0.05 0.68 4.06 -3.83 -0.02 0.66 16 25 C -0.09 -1.19 3.11 -90.63 -0.28 -1.47 16 26 C -0.14 -1.71 9.16 37.16 0.34 -1.37 16 27 C -0.16 -1.82 7.51 37.15 0.28 -1.54 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.63 5.88 -51.93 -0.31 1.32 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.78 5.36 -51.93 -0.28 0.50 16 33 H 0.12 1.32 4.98 -52.49 -0.26 1.06 16 34 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.14 6.66 -52.49 -0.35 0.79 16 38 H 0.04 0.50 5.60 -51.93 -0.29 0.21 16 39 H 0.10 1.44 4.06 -51.93 -0.21 1.23 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 6.63 -51.93 -0.34 0.28 16 42 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.07 0.97 6.30 -51.93 -0.33 0.64 16 46 H 0.05 0.64 4.81 -51.93 -0.25 0.39 16 47 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.77 5.63 -51.93 -0.29 0.47 16 52 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 53 H 0.06 0.61 4.48 -51.93 -0.23 0.38 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -30.88 390.33 -10.16 -41.05 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.87 Total: 0.94 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.64 Total: -21.05 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.17 Total: -34.62 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.34 Total: -9.30 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.88 -10.16 -41.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815070662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.728 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds