Wall clock time and date at job start Tue Mar 31 2020 12:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47256 * 2 1 4 4 H 1.08992 * 109.47346 * 303.29383 * 3 2 1 5 5 C 1.50701 * 109.46794 * 183.29107 * 3 2 1 6 6 C 1.38236 * 120.00432 * 299.69841 * 5 3 2 7 7 C 1.38233 * 119.99737 * 179.79115 * 6 5 3 8 8 C 1.38230 * 120.00325 * 0.43869 * 7 6 5 9 9 C 1.38236 * 120.00137 * 359.81569 * 8 7 6 10 10 C 1.38234 * 119.99851 * 359.97277 * 9 8 7 11 11 N 1.46899 * 109.47148 * 63.29545 * 3 2 1 12 12 C 1.46896 * 111.00281 * 33.37764 * 11 3 2 13 13 C 1.53000 * 109.47394 * 197.76458 * 12 11 3 14 14 O 1.42900 * 109.47190 * 64.99626 * 13 12 11 15 15 C 1.42898 * 114.00053 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47144 * 180.02562 * 15 14 13 17 17 H 1.07993 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99920 * 180.02562 * 16 15 14 19 19 N 1.31508 * 120.00169 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00038 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46910 * 59.99598 * 20 18 16 22 22 H 1.48494 * 109.47311 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46991 * 299.99910 * 20 18 16 24 24 C 1.46902 * 111.00153 * 157.33507 * 11 3 2 25 25 C 1.52992 * 109.47451 * 86.12056 * 24 11 3 26 26 C 1.52998 * 109.47399 * 171.92678 * 25 24 11 27 27 C 1.52995 * 109.47317 * 291.93258 * 25 24 11 28 28 H 1.09002 * 109.47606 * 185.42737 * 1 2 3 29 29 H 1.09005 * 109.47151 * 305.42377 * 1 2 3 30 30 H 1.09003 * 109.47117 * 65.41949 * 1 2 3 31 31 H 1.08995 * 109.46605 * 239.99755 * 2 1 3 32 32 H 1.09001 * 109.46787 * 120.00243 * 2 1 3 33 33 H 1.07996 * 119.99755 * 359.97438 * 6 5 3 34 34 H 1.08006 * 119.99695 * 180.27265 * 7 6 5 35 35 H 1.08001 * 120.00129 * 179.84236 * 8 7 6 36 36 H 1.07997 * 120.00199 * 180.02562 * 9 8 7 37 37 H 1.08001 * 120.00203 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47218 * 77.75977 * 12 11 3 39 39 H 1.09001 * 109.47481 * 317.76690 * 12 11 3 40 40 H 1.08997 * 109.47336 * 185.00072 * 13 12 11 41 41 H 1.09003 * 109.46830 * 304.99965 * 13 12 11 42 42 H 1.09002 * 109.47518 * 300.00544 * 15 14 13 43 43 H 1.09003 * 109.47006 * 60.00200 * 15 14 13 44 44 H 0.97003 * 120.00175 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.47395 * 206.12588 * 24 11 3 46 46 H 1.09005 * 109.46958 * 326.11966 * 24 11 3 47 47 H 1.09005 * 109.46981 * 51.93416 * 25 24 11 48 48 H 1.09000 * 109.47067 * 60.00106 * 26 25 24 49 49 H 1.08996 * 109.47455 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.47118 * 300.00582 * 26 25 24 51 51 H 1.08997 * 109.47784 * 71.38404 * 27 25 24 52 52 H 1.09002 * 109.46969 * 191.38195 * 27 25 24 53 53 H 1.09003 * 109.47140 * 311.37676 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6293 1.9730 -0.8589 5 6 3.5448 1.4431 -0.0816 6 6 4.2910 0.8305 0.9078 7 6 5.6712 0.8275 0.8306 8 6 6.3054 1.4448 -0.2311 9 6 5.5595 2.0619 -1.2178 10 6 4.1792 2.0612 -1.1430 11 7 1.6164 2.1116 1.2372 12 6 1.5784 1.1660 2.3607 13 6 0.7348 1.7537 3.4938 14 8 -0.6211 1.8815 3.0611 15 6 -1.4983 2.4235 4.0504 16 6 -2.8942 2.5126 3.4896 17 1 -3.0916 2.1882 2.4786 18 6 -3.9190 3.0093 4.2668 19 7 -3.6785 3.4049 5.4977 20 14 -5.6495 3.1191 3.5718 21 1 -6.1156 1.7625 3.1876 22 1 -6.5610 3.6825 4.5998 23 1 -5.6476 3.9990 2.3756 24 6 2.4862 3.2557 1.5413 25 6 1.9747 4.4952 0.8047 26 6 2.7533 5.7255 1.2748 27 6 2.1723 4.3114 -0.7012 28 1 -0.3634 -1.0230 0.0972 29 1 -0.3634 0.5957 0.8375 30 1 -0.3633 0.4275 -0.9346 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7955 0.3518 1.7395 34 1 6.2540 0.3450 1.6014 35 1 7.3838 1.4446 -0.2901 36 1 6.0550 2.5439 -2.0476 37 1 3.5963 2.5430 -1.9141 38 1 2.5922 0.9857 2.7184 39 1 1.1376 0.2257 2.0296 40 1 0.7791 1.0935 4.3599 41 1 1.1237 2.7353 3.7648 42 1 -1.5002 1.7769 4.9279 43 1 -1.1559 3.4189 4.3335 44 1 -4.3996 3.7540 6.0446 45 1 2.4790 3.4424 2.6152 46 1 3.5035 3.0348 1.2179 47 1 0.9146 4.6329 1.0179 48 1 3.8133 5.5879 1.0617 49 1 2.3885 6.6087 0.7504 50 1 2.6125 5.8565 2.3478 51 1 1.4671 3.5677 -1.0722 52 1 1.9999 5.2604 -1.2088 53 1 3.1908 3.9751 -0.8957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815070662.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:56 Heat of formation + Delta-G solvation = -29.922980 kcal Electronic energy + Delta-G solvation = -28821.339713 eV Core-core repulsion = 25271.644051 eV Total energy + Delta-G solvation = -3549.695662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59956 -39.00546 -38.00250 -36.29775 -34.92912 -33.51959 -32.22592 -31.73525 -30.35929 -28.80711 -28.01759 -27.25313 -25.40323 -24.45864 -23.90521 -22.91756 -22.44563 -21.03346 -20.37644 -18.60958 -17.87965 -17.55646 -17.33182 -16.73321 -16.42423 -16.23029 -15.81429 -15.61963 -15.48662 -15.27857 -14.78103 -14.58266 -14.36688 -14.24016 -13.77078 -13.72267 -13.53771 -13.43702 -13.21008 -12.98671 -12.84702 -12.81297 -12.63469 -12.61275 -12.54504 -12.32836 -12.14030 -11.96146 -11.84293 -11.63370 -11.56845 -11.48612 -11.37394 -11.19074 -11.02944 -10.78991 -10.11842 -9.75335 -9.50627 -9.00827 -8.29257 -6.40646 0.46322 0.52930 1.39687 1.44767 1.52894 2.36217 2.82307 3.04389 3.08073 3.28616 3.74482 3.85752 4.01768 4.06697 4.11222 4.15689 4.20727 4.27323 4.30435 4.38360 4.45114 4.51042 4.54020 4.60421 4.62881 4.70837 4.74201 4.81717 4.82366 4.85338 4.89631 4.93016 4.95733 5.05121 5.06488 5.09868 5.13845 5.18799 5.20282 5.23070 5.30165 5.32077 5.52854 5.56503 5.58604 5.61255 5.66348 5.69097 5.75705 6.01267 6.14549 6.25799 6.33751 6.61181 6.90774 7.31474 8.83030 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.003356 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.645129 B = 8342.350431 C = 8728.228856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.120 3.880 4 H 0.094 0.906 5 C -0.101 4.101 6 C -0.134 4.134 7 C -0.126 4.126 8 C -0.129 4.129 9 C -0.122 4.122 10 C -0.121 4.121 11 N -0.521 5.521 12 C 0.048 3.952 13 C 0.062 3.938 14 O -0.385 6.385 15 C 0.212 3.788 16 C -0.540 4.540 17 H 0.061 0.939 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.267 1.267 24 C 0.056 3.944 25 C -0.090 4.090 26 C -0.139 4.139 27 C -0.149 4.149 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.028 0.972 42 H -0.020 1.020 43 H -0.024 1.024 44 H 0.269 0.731 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.043 0.957 51 H 0.054 0.946 52 H 0.053 0.947 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.268 -3.539 -14.020 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.111 0.889 5 C -0.103 4.103 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.147 4.147 9 C -0.140 4.140 10 C -0.139 4.139 11 N -0.244 5.244 12 C -0.079 4.079 13 C -0.016 4.016 14 O -0.304 6.304 15 C 0.137 3.863 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.193 4.193 19 N -0.573 5.573 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.071 4.071 25 C -0.109 4.109 26 C -0.197 4.197 27 C -0.206 4.206 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.046 0.954 42 H -0.002 1.002 43 H -0.006 1.006 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.623 -3.347 -14.105 25.208 hybrid contribution -0.186 0.082 0.872 0.896 sum 20.437 -3.266 -13.233 24.565 Atomic orbital electron populations 1.21801 0.95529 1.01360 1.02401 1.21798 0.96054 0.94938 1.02596 1.21109 0.88702 0.95151 0.93839 0.88850 1.20480 0.96428 0.97923 0.95466 1.21293 0.94691 1.00303 0.98934 1.21358 0.94255 0.99718 0.99014 1.21422 1.00892 0.97956 0.94396 1.21420 0.93748 0.99359 0.99480 1.21301 0.95197 0.99190 0.98207 1.62174 1.51444 1.08238 1.02529 1.22543 0.97442 0.97148 0.90772 1.22563 0.84012 0.98393 0.96631 1.87886 1.17625 1.84412 1.40486 1.19719 0.88950 0.90534 0.87091 1.21327 0.93087 1.42938 1.00401 0.92065 1.25943 1.04113 0.94220 0.94993 1.70071 1.34713 1.43174 1.09299 0.85278 0.77169 0.79101 0.78137 1.18905 1.20062 1.19146 1.22362 0.95231 0.90711 0.98798 1.21007 0.99139 0.94257 0.96504 1.21752 1.00295 0.97119 1.00538 1.22195 1.02361 1.01519 0.94476 0.92824 0.92552 0.93001 0.90488 0.91195 0.86352 0.84886 0.84300 0.84197 0.84972 0.91828 0.88210 0.94127 0.95399 1.00218 1.00622 0.92186 0.93288 0.91884 0.93789 0.91826 0.92102 0.93828 0.92692 0.92809 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.26 71.98 0.67 -3.61 16 2 C -0.12 -2.67 4.63 30.59 0.14 -2.53 16 3 C 0.12 2.83 1.78 44.17 0.08 2.91 16 4 H 0.09 2.27 5.19 -2.39 -0.01 2.26 16 5 C -0.10 -2.06 2.62 -19.86 -0.05 -2.11 16 6 C -0.13 -2.65 7.62 22.27 0.17 -2.48 16 7 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 8 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 9 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 10 C -0.12 -2.13 7.31 22.27 0.16 -1.96 16 11 N -0.52 -15.13 3.97 -875.41 -3.47 -18.61 16 12 C 0.05 1.43 3.26 86.30 0.28 1.72 16 13 C 0.06 2.39 6.08 71.98 0.44 2.83 16 14 O -0.38 -19.25 9.69 -148.98 -1.44 -20.70 16 15 C 0.21 12.36 5.69 71.23 0.41 12.77 16 16 C -0.54 -33.02 9.43 25.60 0.24 -32.78 16 17 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 18 C 0.01 0.32 5.46 84.66 0.46 0.78 16 19 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 20 Si 0.98 45.53 29.54 68.60 2.03 47.55 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C 0.06 1.55 4.06 86.30 0.35 1.90 16 25 C -0.09 -2.45 3.11 -10.80 -0.03 -2.48 16 26 C -0.14 -3.26 9.16 71.98 0.66 -2.60 16 27 C -0.15 -3.33 7.51 71.98 0.54 -2.79 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 2.02 5.88 -2.38 -0.01 2.01 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.57 5.36 -2.39 -0.01 1.55 16 33 H 0.12 2.37 4.98 -2.91 -0.01 2.36 16 34 H 0.13 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.13 2.08 6.66 -2.91 -0.02 2.06 16 38 H 0.06 1.59 5.60 -2.39 -0.01 1.58 16 39 H 0.10 2.95 4.06 -2.39 -0.01 2.94 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 41 H 0.03 1.11 6.63 -2.39 -0.02 1.09 16 42 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 43 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.05 1.48 6.30 -2.39 -0.02 1.47 16 46 H 0.06 1.56 4.81 -2.38 -0.01 1.55 16 47 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.05 1.32 5.63 -2.39 -0.01 1.30 16 52 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 53 H 0.07 1.41 4.48 -2.39 -0.01 1.40 16 Total: -1.00 -68.22 390.33 3.46 -64.76 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.88 Total: 19.90 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 5.18 Total: -35.63 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -3.19 Total: -75.88 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -1.44 Total: -20.70 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.22 3.46 -64.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815070662.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.836 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds