Wall clock time and date at job start Tue Mar 31 2020 13:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.03998 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46945 * 269.99879 * 5 4 3 7 7 H 1.09001 * 110.43376 * 307.53571 * 6 5 4 8 8 C 1.54890 * 110.48814 * 70.22520 * 6 5 4 9 9 C 1.54888 * 102.74838 * 156.61967 * 8 6 5 10 10 C 1.54269 * 104.19626 * 322.05689 * 9 8 6 11 11 C 1.53873 * 106.59631 * 23.61184 * 10 9 8 12 12 H 1.09005 * 110.03046 * 240.71392 * 11 10 9 13 13 N 1.46902 * 110.03256 * 119.28685 * 11 10 9 14 14 C 1.46897 * 111.00178 * 87.83262 * 13 11 10 15 15 C 1.52999 * 109.47215 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.46876 * 299.99602 * 15 14 13 17 17 C 1.52993 * 109.47338 * 59.99631 * 15 14 13 18 18 C 1.52999 * 109.47213 * 179.97438 * 15 14 13 19 19 C 1.50702 * 109.47264 * 179.97438 * 18 15 14 20 20 H 1.08003 * 119.99391 * 0.02562 * 19 18 15 21 21 C 1.37876 * 120.00269 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00306 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99702 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47045 * 90.00543 * 23 21 19 25 25 H 1.48499 * 109.46978 * 210.00006 * 23 21 19 26 26 H 1.48498 * 109.47444 * 330.00151 * 23 21 19 27 27 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 28 28 N 1.30844 * 108.20609 * 0.02562 * 27 4 3 29 29 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 30 30 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 31 31 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 32 32 H 1.08004 * 126.12633 * 0.04038 * 3 2 1 33 33 H 1.08998 * 109.46828 * 29.99625 * 5 4 3 34 34 H 1.08998 * 109.47244 * 149.99363 * 5 4 3 35 35 H 1.08998 * 110.75434 * 274.93212 * 8 6 5 36 36 H 1.09001 * 110.75940 * 38.30515 * 8 6 5 37 37 H 1.08997 * 110.48490 * 203.38110 * 9 8 6 38 38 H 1.08997 * 110.48695 * 80.73307 * 9 8 6 39 39 H 1.09004 * 110.03243 * 264.32733 * 10 9 8 40 40 H 1.09004 * 110.03130 * 142.89630 * 10 9 8 41 41 H 1.00892 * 110.99528 * 323.87399 * 13 11 10 42 42 H 1.09002 * 109.46977 * 299.99739 * 14 13 11 43 43 H 1.08994 * 109.47733 * 59.99641 * 14 13 11 44 44 H 1.09007 * 109.47225 * 59.99777 * 16 15 14 45 45 H 1.09001 * 109.47474 * 180.02562 * 16 15 14 46 46 H 1.09002 * 109.47517 * 300.00014 * 16 15 14 47 47 H 1.09002 * 109.47223 * 60.00309 * 17 15 14 48 48 H 1.09003 * 109.47372 * 180.02562 * 17 15 14 49 49 H 1.09001 * 109.47434 * 300.00281 * 17 15 14 50 50 H 1.09002 * 109.47194 * 299.99596 * 18 15 14 51 51 H 1.09004 * 109.47010 * 59.99561 * 18 15 14 52 52 H 0.96994 * 120.00178 * 179.97438 * 22 21 19 53 53 H 1.08004 * 125.89910 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0013 6 6 5.1816 1.8425 -1.4441 7 1 5.2800 0.9163 -2.0102 8 6 4.1559 2.7871 -2.1185 9 6 4.9867 3.4420 -3.2498 10 6 6.3799 3.6536 -2.6221 11 6 6.5038 2.6366 -1.4741 12 1 6.6479 3.1577 -0.5276 13 7 7.6307 1.7284 -1.7257 14 6 8.8826 2.2827 -1.1934 15 6 10.0307 1.3112 -1.4745 16 6 9.7398 -0.0309 -0.8000 17 6 10.1658 1.1045 -2.9844 18 6 11.3347 1.8888 -0.9206 19 6 12.4655 0.9316 -1.1970 20 1 12.2732 0.0043 -1.7161 21 6 13.7453 1.2397 -0.7870 22 7 14.7322 0.4047 -1.0286 23 14 14.0778 2.8440 0.1102 24 1 13.9268 2.6338 1.5725 25 1 15.4605 3.2985 -0.1842 26 1 13.1105 3.8751 -0.3442 27 6 3.5347 -0.7320 -0.0003 28 7 2.2892 -1.1327 -0.0002 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.9281 2.1194 0.0006 33 1 4.5444 2.4804 0.5124 34 1 5.5824 1.0344 0.5123 35 1 3.3214 2.2199 -2.5308 36 1 3.8021 3.5397 -1.4138 37 1 4.5498 4.3975 -3.5397 38 1 5.0529 2.7752 -4.1095 39 1 6.4639 4.6683 -2.2329 40 1 7.1559 3.4732 -3.3661 41 1 7.7160 1.5222 -2.7096 42 1 9.0901 3.2386 -1.6743 43 1 8.7863 2.4304 -0.1178 44 1 8.8107 -0.4422 -1.1949 45 1 10.5578 -0.7229 -0.9998 46 1 9.6435 0.1163 0.2757 47 1 10.3731 2.0606 -3.4649 48 1 10.9834 0.4120 -3.1846 49 1 9.2368 0.6932 -3.3794 50 1 11.5418 2.8448 -1.4015 51 1 11.2387 2.0364 0.1551 52 1 15.6326 0.6216 -0.7406 53 1 4.4055 -1.3709 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926427299.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:10 Heat of formation + Delta-G solvation = 31.771123 kcal Electronic energy + Delta-G solvation = -27374.964716 eV Core-core repulsion = 23860.237062 eV Total energy + Delta-G solvation = -3514.727654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05333 -40.04653 -38.45177 -35.07289 -34.48954 -33.61990 -32.83761 -30.00999 -29.69869 -28.13182 -27.87825 -27.67714 -26.20654 -24.92743 -23.57741 -22.05481 -21.33099 -20.88603 -20.67306 -19.28409 -18.84435 -17.58596 -16.74164 -16.56486 -16.20252 -16.09824 -15.44874 -15.35507 -15.26650 -15.04935 -14.74735 -14.51151 -14.33897 -14.09896 -13.97116 -13.77924 -13.49590 -13.46291 -13.12032 -12.93542 -12.81566 -12.72320 -12.61425 -12.24227 -12.19842 -12.08117 -12.01450 -11.88606 -11.68846 -11.49685 -11.47406 -11.40207 -11.29464 -11.14100 -10.91645 -10.70461 -10.68371 -10.27573 -9.18884 -9.01965 -8.20114 -6.20131 1.05046 1.36825 1.37963 1.49285 1.79797 1.94193 2.40752 3.14769 3.37068 3.72843 3.83462 3.87411 4.06989 4.14612 4.18476 4.27908 4.37207 4.38378 4.47074 4.50451 4.56903 4.65624 4.71403 4.72761 4.73443 4.79197 4.85070 4.90562 4.92565 4.97505 5.00519 5.07113 5.11333 5.12387 5.15785 5.21571 5.22731 5.30087 5.36009 5.40524 5.42787 5.48692 5.56993 5.57859 5.65661 5.71693 5.80030 5.81576 5.85795 6.27061 6.33787 6.46437 6.66642 6.83142 6.87369 7.42104 8.96155 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.002529 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.699116 B =11069.474026 C =11758.060641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.060 3.940 4 C -0.237 4.237 5 C -0.022 4.022 6 C -0.063 4.063 7 H 0.063 0.937 8 C -0.108 4.108 9 C -0.119 4.119 10 C -0.152 4.152 11 C 0.086 3.914 12 H 0.076 0.924 13 N -0.678 5.678 14 C 0.083 3.917 15 C -0.047 4.047 16 C -0.108 4.108 17 C -0.124 4.124 18 C -0.003 4.003 19 C -0.501 4.501 20 H 0.043 0.957 21 C -0.002 4.002 22 N -0.955 5.955 23 Si 0.942 3.058 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.249 1.249 27 C 0.037 3.963 28 N -0.342 5.342 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.203 0.797 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.341 0.659 42 H 0.023 0.977 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.037 0.963 47 H 0.042 0.958 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.012 0.988 51 H 0.011 0.989 52 H 0.262 0.738 53 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.136 8.242 -0.138 33.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.167 5.167 3 C -0.086 4.086 4 C -0.248 4.248 5 C -0.061 4.061 6 C -0.082 4.082 7 H 0.082 0.918 8 C -0.145 4.145 9 C -0.157 4.157 10 C -0.191 4.191 11 C -0.024 4.024 12 H 0.094 0.906 13 N -0.310 5.310 14 C -0.046 4.046 15 C -0.048 4.048 16 C -0.165 4.165 17 C -0.181 4.181 18 C -0.041 4.041 19 C -0.539 4.539 20 H 0.061 0.939 21 C -0.197 4.197 22 N -0.597 5.597 23 Si 0.766 3.234 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.172 1.172 27 C -0.148 4.148 28 N -0.164 5.164 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.220 0.780 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.161 0.839 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.030 0.970 51 H 0.029 0.971 52 H 0.070 0.930 53 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -33.055 6.817 0.443 33.754 hybrid contribution 1.932 1.434 -0.300 2.425 sum -31.123 8.251 0.143 32.199 Atomic orbital electron populations 1.22141 0.72416 1.05732 1.04354 1.48788 1.07767 1.03530 1.56623 1.22785 0.90387 0.94218 1.01248 1.20232 0.95368 0.93391 1.15845 1.19803 0.92831 0.97610 0.95846 1.21845 0.92625 0.97887 0.95875 0.91825 1.22477 0.96991 0.97953 0.97110 1.22276 0.94639 1.00770 0.97991 1.22881 0.98113 1.00081 0.98069 1.22343 0.90891 0.91354 0.97821 0.90607 1.60587 1.02891 1.45334 1.22147 1.21840 0.88775 0.94638 0.99366 1.20337 0.93318 0.95665 0.95458 1.21498 0.99814 0.96161 0.99010 1.21687 1.00553 1.00584 0.95268 1.19602 0.93580 0.95403 0.95518 1.21439 0.92220 1.05031 1.35255 0.93859 1.25952 0.96326 1.00298 0.97173 1.70068 1.00943 1.38794 1.49943 0.85781 0.77402 0.80873 0.79296 1.19623 1.21514 1.17243 1.24061 0.95072 0.95940 0.99746 1.77285 1.02569 1.10116 1.26456 0.89877 0.86665 0.89657 0.78045 0.90587 0.92197 0.91881 0.90275 0.91024 0.92353 0.91578 0.92854 0.83931 0.95887 0.91744 0.91477 0.95655 0.94361 0.93848 0.94708 0.91664 0.96988 0.97067 0.92953 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.47 127.77 1.47 2.18 16 2 N -0.38 -6.46 4.01 -369.55 -1.48 -7.94 16 3 C 0.06 0.86 11.14 83.54 0.93 1.79 16 4 C -0.24 -4.33 5.07 -20.14 -0.10 -4.43 16 5 C -0.02 -0.38 5.05 29.85 0.15 -0.23 16 6 C -0.06 -1.09 2.55 -9.72 -0.02 -1.11 16 7 H 0.06 1.36 8.05 -2.39 -0.02 1.34 16 8 C -0.11 -1.43 5.77 31.89 0.18 -1.25 16 9 C -0.12 -1.73 6.83 31.67 0.22 -1.52 16 10 C -0.15 -2.70 6.43 31.32 0.20 -2.50 16 11 C 0.09 1.69 2.80 45.64 0.13 1.82 16 12 H 0.08 1.53 7.51 -2.38 -0.02 1.52 16 13 N -0.68 -16.70 5.42 -487.84 -2.65 -19.34 16 14 C 0.08 2.49 4.47 86.30 0.39 2.88 16 15 C -0.05 -1.78 0.60 -52.19 -0.03 -1.81 16 16 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 17 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 18 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 19 C -0.50 -28.49 8.20 25.60 0.21 -28.28 16 20 H 0.04 2.70 5.92 -2.91 -0.02 2.69 16 21 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 22 N -0.96 -60.78 13.96 21.45 0.30 -60.48 16 23 Si 0.94 45.19 27.47 68.60 1.88 47.07 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 27 C 0.04 0.82 11.96 85.23 1.02 1.84 16 28 N -0.34 -8.13 12.58 -57.02 -0.72 -8.85 16 29 H 0.08 0.46 8.14 -2.38 -0.02 0.45 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.08 1.07 8.02 -2.39 -0.02 1.05 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.84 7.97 -2.39 -0.02 0.82 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.05 1.07 7.56 -2.38 -0.02 1.05 16 41 H 0.34 8.32 6.19 -89.70 -0.56 7.76 16 42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 44 H 0.07 2.25 7.60 -2.38 -0.02 2.24 16 45 H 0.02 1.11 6.62 -2.39 -0.02 1.09 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.03 1.49 6.62 -2.39 -0.02 1.47 16 49 H 0.06 1.96 6.57 -2.39 -0.02 1.95 16 50 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 51 H 0.01 0.51 7.57 -2.38 -0.02 0.49 16 52 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 53 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -71.12 406.54 4.02 -67.10 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.25 Total: 20.25 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 6.44 Total: -37.80 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.55 Total: -96.62 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -71.12 4.02 -67.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427299.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.867 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds