Wall clock time and date at job start Tue Mar 31 2020 13:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03486 * 2 1 4 4 C 1.35318 * 107.74248 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.03884 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47378 * 90.00172 * 5 4 3 7 7 H 1.09006 * 110.05634 * 53.58359 * 6 5 4 8 8 C 1.53880 * 110.03071 * 292.16698 * 6 5 4 9 9 C 1.54261 * 106.59559 * 240.71349 * 8 6 5 10 10 C 1.54887 * 104.20027 * 336.38883 * 9 8 6 11 11 C 1.54267 * 110.03664 * 174.99772 * 6 5 4 12 12 H 1.09004 * 110.59476 * 24.16494 * 11 6 5 13 13 N 1.46895 * 110.49058 * 261.57698 * 11 6 5 14 14 C 1.46891 * 111.00467 * 158.76906 * 13 11 6 15 15 C 1.52996 * 109.47214 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47011 * 60.00416 * 15 14 13 17 17 C 1.52994 * 109.47614 * 299.99752 * 15 14 13 18 18 C 1.53003 * 109.47016 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47202 * 180.02562 * 18 15 14 20 20 H 1.08002 * 119.99685 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00216 * 180.02562 * 19 18 15 22 22 N 1.31516 * 120.00069 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00621 * 23 21 19 25 25 H 1.48503 * 109.47399 * 210.00111 * 23 21 19 26 26 H 1.48498 * 109.47295 * 330.00717 * 23 21 19 27 27 C 1.39875 * 107.92145 * 0.26596 * 4 3 2 28 28 N 1.30839 * 108.19992 * 359.55421 * 27 4 3 29 29 H 1.09003 * 109.46617 * 89.99904 * 1 2 3 30 30 H 1.09001 * 109.47117 * 209.99699 * 1 2 3 31 31 H 1.09000 * 109.47108 * 330.00117 * 1 2 3 32 32 H 1.07996 * 126.13043 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47158 * 329.99571 * 5 4 3 34 34 H 1.09007 * 109.47075 * 209.99842 * 5 4 3 35 35 H 1.08997 * 110.03121 * 121.42625 * 8 6 5 36 36 H 1.09001 * 110.06950 * 0.02562 * 8 6 5 37 37 H 1.09003 * 110.48593 * 217.70674 * 9 8 6 38 38 H 1.09006 * 110.48632 * 95.06983 * 9 8 6 39 39 H 1.08999 * 110.75775 * 279.62772 * 10 9 8 40 40 H 1.09000 * 110.75467 * 156.25491 * 10 9 8 41 41 H 1.00912 * 110.99433 * 282.72494 * 13 11 6 42 42 H 1.08999 * 109.47303 * 59.99773 * 14 13 11 43 43 H 1.09001 * 109.47183 * 299.99865 * 14 13 11 44 44 H 1.08996 * 109.46960 * 179.97438 * 16 15 14 45 45 H 1.08991 * 109.46371 * 299.99621 * 16 15 14 46 46 H 1.09001 * 109.47122 * 59.99716 * 16 15 14 47 47 H 1.09000 * 109.47232 * 300.00430 * 17 15 14 48 48 H 1.09005 * 109.46579 * 59.99946 * 17 15 14 49 49 H 1.09001 * 109.47498 * 179.97438 * 17 15 14 50 50 H 1.08999 * 109.47344 * 60.00450 * 18 15 14 51 51 H 1.09001 * 109.47340 * 300.00421 * 18 15 14 52 52 H 0.97000 * 119.99667 * 179.97438 * 22 21 19 53 53 H 1.08001 * 125.89769 * 179.73525 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 5.1817 1.8424 1.4440 7 1 5.2975 0.9114 1.9990 8 6 4.1256 2.7326 2.1225 9 6 4.8434 4.0362 2.5287 10 6 6.3345 3.6311 2.6367 11 6 6.5043 2.6362 1.4618 12 1 6.6415 3.1738 0.5235 13 7 7.6399 1.7378 1.7089 14 6 8.8973 2.3383 1.2440 15 6 10.0543 1.3757 1.5183 16 6 9.8113 0.0610 0.7742 17 6 10.1449 1.1021 3.0209 18 6 11.3639 2.0010 1.0335 19 6 12.5035 1.0525 1.3031 20 1 12.3129 0.0993 1.7736 21 6 13.7897 1.4021 0.9501 22 7 14.7843 0.5746 1.1858 23 14 14.1194 3.0512 0.1368 24 1 14.3939 4.0715 1.1803 25 1 15.2957 2.9335 -0.7619 26 1 12.9308 3.4595 -0.6542 27 6 3.5347 -0.7321 -0.0052 28 7 2.2891 -1.1328 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9282 2.1194 -0.0004 33 1 4.5445 2.4802 -0.5125 34 1 5.5824 1.0342 -0.5122 35 1 3.7289 2.2336 3.0066 36 1 3.3179 2.9529 1.4245 37 1 4.4739 4.3913 3.4908 38 1 4.7100 4.7999 1.7624 39 1 6.5336 3.1411 3.5897 40 1 6.9809 4.4987 2.5047 41 1 7.6976 1.4880 2.6849 42 1 9.0706 3.2747 1.7743 43 1 8.8327 2.5336 0.1735 44 1 10.6359 -0.6246 0.9693 45 1 8.8784 -0.3845 1.1192 46 1 9.7469 0.2560 -0.2963 47 1 10.3180 2.0386 3.5509 48 1 9.2119 0.6564 3.3659 49 1 10.9690 0.4159 3.2162 50 1 11.5373 2.9377 1.5632 51 1 11.2991 2.1956 -0.0371 52 1 15.6890 0.8204 0.9371 53 1 4.4054 -1.3710 -0.0103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926427310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:22 Heat of formation + Delta-G solvation = 48.965156 kcal Electronic energy + Delta-G solvation = -27354.102648 eV Core-core repulsion = 23840.120583 eV Total energy + Delta-G solvation = -3513.982064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38125 -39.07564 -37.10220 -34.04058 -33.28085 -32.18462 -31.86087 -29.27831 -27.96271 -27.19017 -26.89182 -26.31432 -25.04080 -23.89656 -21.82555 -21.34016 -20.88162 -20.26163 -19.52570 -17.72484 -16.85764 -16.74607 -15.96138 -15.79031 -15.30304 -14.66088 -14.64468 -14.14570 -13.94806 -13.86222 -13.67718 -13.29920 -13.21126 -13.04508 -12.93218 -12.68527 -12.43636 -12.31208 -12.14573 -12.01989 -11.67783 -11.27647 -11.18295 -11.02632 -10.96692 -10.81045 -10.78035 -10.68862 -10.56595 -10.44349 -10.36265 -10.24912 -9.76373 -9.62837 -9.57548 -9.21928 -8.85113 -8.46708 -8.46301 -7.97814 -5.96592 -3.92343 1.71867 2.33791 2.69083 3.34309 3.42129 3.45912 4.26997 4.35035 4.51314 4.55393 4.60263 4.67413 4.78130 4.92319 4.93827 5.03735 5.19773 5.29629 5.34868 5.36539 5.38072 5.48303 5.58043 5.62169 5.64947 5.71270 5.75829 5.81324 5.85890 5.91688 5.93290 6.04669 6.09440 6.17038 6.24248 6.30156 6.34166 6.42946 6.48465 6.54610 6.65580 6.76283 6.83215 6.85962 7.14260 7.20228 7.25507 7.38864 7.43276 7.52406 7.54850 7.73652 7.89720 8.63827 9.09815 9.66733 11.16557 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002504 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.398994 B =11181.163554 C =11886.714422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.382 5.382 3 C 0.048 3.952 4 C -0.222 4.222 5 C -0.031 4.031 6 C -0.073 4.073 7 H 0.078 0.922 8 C -0.117 4.117 9 C -0.121 4.121 10 C -0.156 4.156 11 C 0.088 3.912 12 H 0.080 0.920 13 N -0.677 5.677 14 C 0.069 3.931 15 C -0.048 4.048 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.005 4.005 19 C -0.505 4.505 20 H 0.078 0.922 21 C 0.063 3.937 22 N -0.906 5.906 23 Si 0.876 3.124 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.055 3.945 28 N -0.302 5.302 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.340 0.660 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.035 0.965 49 H 0.068 0.932 50 H 0.007 0.993 51 H 0.014 0.986 52 H 0.261 0.739 53 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.216 5.020 -0.127 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.097 4.097 4 C -0.233 4.233 5 C -0.070 4.070 6 C -0.092 4.092 7 H 0.097 0.903 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.195 4.195 11 C -0.023 4.023 12 H 0.098 0.902 13 N -0.308 5.308 14 C -0.060 4.060 15 C -0.049 4.049 16 C -0.174 4.174 17 C -0.188 4.188 18 C -0.042 4.042 19 C -0.543 4.543 20 H 0.096 0.904 21 C -0.137 4.137 22 N -0.546 5.546 23 Si 0.703 3.297 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.191 1.191 27 C -0.131 4.131 28 N -0.123 5.123 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.185 0.815 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.159 0.841 42 H 0.039 0.961 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.025 0.975 51 H 0.032 0.968 52 H 0.071 0.929 53 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -30.079 3.612 -0.733 30.304 hybrid contribution 0.989 2.413 0.287 2.623 sum -29.090 6.025 -0.446 29.711 Atomic orbital electron populations 1.21798 0.74626 1.04268 1.03136 1.48429 1.06423 1.03988 1.57663 1.22296 0.91019 0.93024 1.03368 1.20168 0.94496 0.94037 1.14604 1.19967 0.93478 0.97282 0.96227 1.21706 0.92995 0.98744 0.95776 0.90339 1.22198 0.97884 0.95491 0.99874 1.22267 0.95427 0.97467 1.00789 1.23231 0.96506 1.00146 0.99665 1.22503 0.90967 0.91397 0.97447 0.90152 1.60576 1.02746 1.42553 1.24879 1.22123 0.88835 0.95532 0.99504 1.20408 0.93880 0.95268 0.95316 1.21604 1.00294 0.96843 0.98689 1.21780 1.00440 1.01014 0.95545 1.19631 0.92868 0.95999 0.95746 1.21148 0.90075 1.03915 1.39160 0.90429 1.25028 0.96399 0.96652 0.95630 1.69912 0.99756 1.36255 1.48669 0.86848 0.77833 0.85094 0.79883 1.20579 1.21602 1.19115 1.23894 0.95047 0.94869 0.99274 1.77355 1.01894 1.08208 1.24830 0.90989 0.89463 0.89723 0.81460 0.92000 0.90393 0.92456 0.92097 0.92247 0.91896 0.91515 0.91871 0.84054 0.96064 0.91740 0.92282 0.93572 0.94269 0.94252 0.94566 0.91268 0.97495 0.96753 0.92943 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.85 0.69 1.21 16 2 N -0.38 -3.58 4.01 -68.16 -0.27 -3.86 16 3 C 0.05 0.41 10.39 -17.22 -0.18 0.24 16 4 C -0.22 -2.20 5.03 -105.05 -0.53 -2.73 16 5 C -0.03 -0.29 4.84 -27.89 -0.14 -0.43 16 6 C -0.07 -0.71 2.65 -89.50 -0.24 -0.95 16 7 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 8 C -0.12 -0.98 6.07 -25.61 -0.16 -1.14 16 9 C -0.12 -1.03 6.83 -25.08 -0.17 -1.20 16 10 C -0.16 -1.59 6.41 -24.74 -0.16 -1.75 16 11 C 0.09 0.96 2.69 -66.06 -0.18 0.78 16 12 H 0.08 0.93 7.59 -51.93 -0.39 0.53 16 13 N -0.68 -8.94 5.48 -104.99 -0.58 -9.52 16 14 C 0.07 1.09 4.49 -3.83 -0.02 1.08 16 15 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 16 C -0.12 -2.22 8.06 37.16 0.30 -1.93 16 17 C -0.13 -2.38 7.89 37.15 0.29 -2.09 16 18 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 19 C -0.50 -13.96 8.20 -34.44 -0.28 -14.24 16 20 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 21 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 22 N -0.91 -27.90 13.96 55.43 0.77 -27.13 16 23 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 27 C 0.06 0.62 11.96 -17.36 -0.21 0.41 16 28 N -0.30 -3.63 12.58 30.63 0.39 -3.25 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.17 0.95 7.53 -52.49 -0.40 0.55 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 6.07 -51.93 -0.32 0.14 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.34 4.46 6.34 -39.29 -0.25 4.21 16 42 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 43 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 44 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 45 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 49 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 50 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 51 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 53 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -31.83 404.05 -9.28 -41.11 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -9.76 Total: 1.56 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.25 Total: -22.21 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.31 Total: -43.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.83 -9.28 -41.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.077 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds