Wall clock time and date at job start Tue Mar 31 2020 13:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03486 * 2 1 4 4 C 1.35318 * 107.74248 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.03884 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47378 * 90.00172 * 5 4 3 7 7 H 1.09006 * 110.05634 * 53.58359 * 6 5 4 8 8 C 1.53880 * 110.03071 * 292.16698 * 6 5 4 9 9 C 1.54261 * 106.59559 * 240.71349 * 8 6 5 10 10 C 1.54887 * 104.20027 * 336.38883 * 9 8 6 11 11 C 1.54267 * 110.03664 * 174.99772 * 6 5 4 12 12 H 1.09004 * 110.59476 * 24.16494 * 11 6 5 13 13 N 1.46895 * 110.49058 * 261.57698 * 11 6 5 14 14 C 1.46891 * 111.00467 * 158.76906 * 13 11 6 15 15 C 1.52996 * 109.47214 * 179.97438 * 14 13 11 16 16 C 1.53008 * 109.47011 * 60.00416 * 15 14 13 17 17 C 1.52994 * 109.47614 * 299.99752 * 15 14 13 18 18 C 1.53003 * 109.47016 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47202 * 180.02562 * 18 15 14 20 20 H 1.08002 * 119.99685 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00216 * 180.02562 * 19 18 15 22 22 N 1.31516 * 120.00069 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46845 * 90.00621 * 23 21 19 25 25 H 1.48503 * 109.47399 * 210.00111 * 23 21 19 26 26 H 1.48498 * 109.47295 * 330.00717 * 23 21 19 27 27 C 1.39875 * 107.92145 * 0.26596 * 4 3 2 28 28 N 1.30839 * 108.19992 * 359.55421 * 27 4 3 29 29 H 1.09003 * 109.46617 * 89.99904 * 1 2 3 30 30 H 1.09001 * 109.47117 * 209.99699 * 1 2 3 31 31 H 1.09000 * 109.47108 * 330.00117 * 1 2 3 32 32 H 1.07996 * 126.13043 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47158 * 329.99571 * 5 4 3 34 34 H 1.09007 * 109.47075 * 209.99842 * 5 4 3 35 35 H 1.08997 * 110.03121 * 121.42625 * 8 6 5 36 36 H 1.09001 * 110.06950 * 0.02562 * 8 6 5 37 37 H 1.09003 * 110.48593 * 217.70674 * 9 8 6 38 38 H 1.09006 * 110.48632 * 95.06983 * 9 8 6 39 39 H 1.08999 * 110.75775 * 279.62772 * 10 9 8 40 40 H 1.09000 * 110.75467 * 156.25491 * 10 9 8 41 41 H 1.00912 * 110.99433 * 282.72494 * 13 11 6 42 42 H 1.08999 * 109.47303 * 59.99773 * 14 13 11 43 43 H 1.09001 * 109.47183 * 299.99865 * 14 13 11 44 44 H 1.08996 * 109.46960 * 179.97438 * 16 15 14 45 45 H 1.08991 * 109.46371 * 299.99621 * 16 15 14 46 46 H 1.09001 * 109.47122 * 59.99716 * 16 15 14 47 47 H 1.09000 * 109.47232 * 300.00430 * 17 15 14 48 48 H 1.09005 * 109.46579 * 59.99946 * 17 15 14 49 49 H 1.09001 * 109.47498 * 179.97438 * 17 15 14 50 50 H 1.08999 * 109.47344 * 60.00450 * 18 15 14 51 51 H 1.09001 * 109.47340 * 300.00421 * 18 15 14 52 52 H 0.97000 * 119.99667 * 179.97438 * 22 21 19 53 53 H 1.08001 * 125.89769 * 179.73525 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 5.1817 1.8424 1.4440 7 1 5.2975 0.9114 1.9990 8 6 4.1256 2.7326 2.1225 9 6 4.8434 4.0362 2.5287 10 6 6.3345 3.6311 2.6367 11 6 6.5043 2.6362 1.4618 12 1 6.6415 3.1738 0.5235 13 7 7.6399 1.7378 1.7089 14 6 8.8973 2.3383 1.2440 15 6 10.0543 1.3757 1.5183 16 6 9.8113 0.0610 0.7742 17 6 10.1449 1.1021 3.0209 18 6 11.3639 2.0010 1.0335 19 6 12.5035 1.0525 1.3031 20 1 12.3129 0.0993 1.7736 21 6 13.7897 1.4021 0.9501 22 7 14.7843 0.5746 1.1858 23 14 14.1194 3.0512 0.1368 24 1 14.3939 4.0715 1.1803 25 1 15.2957 2.9335 -0.7619 26 1 12.9308 3.4595 -0.6542 27 6 3.5347 -0.7321 -0.0052 28 7 2.2891 -1.1328 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9282 2.1194 -0.0004 33 1 4.5445 2.4802 -0.5125 34 1 5.5824 1.0342 -0.5122 35 1 3.7289 2.2336 3.0066 36 1 3.3179 2.9529 1.4245 37 1 4.4739 4.3913 3.4908 38 1 4.7100 4.7999 1.7624 39 1 6.5336 3.1411 3.5897 40 1 6.9809 4.4987 2.5047 41 1 7.6976 1.4880 2.6849 42 1 9.0706 3.2747 1.7743 43 1 8.8327 2.5336 0.1735 44 1 10.6359 -0.6246 0.9693 45 1 8.8784 -0.3845 1.1192 46 1 9.7469 0.2560 -0.2963 47 1 10.3180 2.0386 3.5509 48 1 9.2119 0.6564 3.3659 49 1 10.9690 0.4159 3.2162 50 1 11.5373 2.9377 1.5632 51 1 11.2991 2.1956 -0.0371 52 1 15.6890 0.8204 0.9371 53 1 4.4054 -1.3710 -0.0103 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926427310.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:21 Heat of formation + Delta-G solvation = 30.861977 kcal Electronic energy + Delta-G solvation = -27354.887660 eV Core-core repulsion = 23840.120583 eV Total energy + Delta-G solvation = -3514.767077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.232 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07800 -40.01963 -38.48373 -35.09404 -34.47854 -33.65256 -32.81442 -30.00815 -29.68756 -28.14610 -27.87731 -27.68626 -26.20878 -24.93745 -23.52299 -22.04135 -21.62140 -21.03178 -20.32303 -19.25982 -18.84258 -17.48681 -16.89311 -16.58220 -16.27631 -16.02937 -15.66663 -15.36347 -15.22216 -15.04483 -14.68237 -14.43019 -14.20772 -14.04595 -13.97288 -13.77199 -13.49743 -13.46442 -13.09062 -13.01009 -12.87186 -12.76649 -12.65960 -12.34945 -12.17745 -12.06083 -11.99950 -11.86204 -11.70660 -11.55515 -11.52804 -11.30473 -11.26614 -11.10349 -10.91623 -10.71559 -10.68168 -10.28352 -9.20202 -9.00447 -8.19955 -6.19942 1.04122 1.36350 1.38556 1.49801 1.78912 1.93388 2.40961 3.14932 3.34843 3.72209 3.84088 3.90429 4.04087 4.15503 4.18588 4.27496 4.37290 4.38265 4.46645 4.49449 4.57215 4.60889 4.64316 4.71651 4.74326 4.79238 4.85439 4.90290 4.93463 4.97831 5.00167 5.06796 5.10302 5.12670 5.17094 5.19010 5.22934 5.33265 5.37010 5.41461 5.47315 5.48335 5.56888 5.58709 5.63868 5.69528 5.79996 5.81148 5.85916 6.25964 6.33094 6.46342 6.65815 6.82317 6.87571 7.42271 8.96298 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002504 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.398994 B =11181.163554 C =11886.714422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.059 3.941 4 C -0.237 4.237 5 C -0.022 4.022 6 C -0.065 4.065 7 H 0.061 0.939 8 C -0.110 4.110 9 C -0.116 4.116 10 C -0.156 4.156 11 C 0.088 3.912 12 H 0.080 0.920 13 N -0.678 5.678 14 C 0.084 3.916 15 C -0.048 4.048 16 C -0.108 4.108 17 C -0.124 4.124 18 C -0.003 4.003 19 C -0.501 4.501 20 H 0.043 0.957 21 C -0.002 4.002 22 N -0.955 5.955 23 Si 0.942 3.058 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.248 1.248 27 C 0.037 3.963 28 N -0.341 5.341 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.203 0.797 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.341 0.659 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.043 0.957 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.010 0.990 51 H 0.013 0.987 52 H 0.262 0.738 53 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.309 7.855 -0.483 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.167 5.167 3 C -0.088 4.088 4 C -0.249 4.249 5 C -0.061 4.061 6 C -0.084 4.084 7 H 0.079 0.921 8 C -0.148 4.148 9 C -0.154 4.154 10 C -0.195 4.195 11 C -0.023 4.023 12 H 0.098 0.902 13 N -0.309 5.309 14 C -0.046 4.046 15 C -0.048 4.048 16 C -0.165 4.165 17 C -0.181 4.181 18 C -0.041 4.041 19 C -0.539 4.539 20 H 0.061 0.939 21 C -0.198 4.198 22 N -0.597 5.597 23 Si 0.766 3.234 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.172 1.172 27 C -0.148 4.148 28 N -0.164 5.164 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.220 0.780 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.161 0.839 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.053 0.947 50 H 0.029 0.971 51 H 0.031 0.969 52 H 0.070 0.930 53 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -33.211 6.443 -1.084 33.848 hybrid contribution 1.866 1.437 0.435 2.395 sum -31.345 7.879 -0.650 32.327 Atomic orbital electron populations 1.22145 0.72404 1.05737 1.04373 1.48790 1.07773 1.03515 1.56608 1.22800 0.90409 0.94196 1.01355 1.20247 0.95359 0.93442 1.15822 1.19865 0.92841 0.97555 0.95851 1.21600 0.92814 0.98060 0.95965 0.92093 1.22145 0.97746 0.94997 0.99913 1.22247 0.93907 0.97625 1.01589 1.23193 0.97853 0.99576 0.98864 1.22554 0.90430 0.91450 0.97819 0.90216 1.60527 1.02236 1.43179 1.24954 1.21826 0.88637 0.94503 0.99604 1.20342 0.93305 0.95660 0.95488 1.21497 0.99897 0.96391 0.98707 1.21689 1.00576 1.00570 0.95273 1.19602 0.93553 0.95243 0.95706 1.21440 0.91561 1.03355 1.37583 0.93859 1.25955 0.96321 1.00744 0.96751 1.70072 1.00279 1.38666 1.50732 0.85782 0.78166 0.80291 0.79125 1.19610 1.21532 1.17212 1.24064 0.95086 0.95911 0.99733 1.77281 1.02573 1.10106 1.26402 0.89843 0.89640 0.86683 0.78045 0.90624 0.92138 0.92828 0.90462 0.91510 0.90896 0.91978 0.92321 0.83906 0.95741 0.91814 0.95633 0.91473 0.94393 0.93789 0.91654 0.94724 0.97124 0.96907 0.92960 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.47 127.77 1.47 2.18 16 2 N -0.38 -6.44 4.01 -369.55 -1.48 -7.92 16 3 C 0.06 0.84 10.39 83.54 0.87 1.71 16 4 C -0.24 -4.32 5.03 -20.14 -0.10 -4.43 16 5 C -0.02 -0.38 4.84 29.85 0.14 -0.24 16 6 C -0.07 -1.13 2.65 -10.07 -0.03 -1.16 16 7 H 0.06 1.30 8.04 -2.38 -0.02 1.28 16 8 C -0.11 -1.51 6.07 31.32 0.19 -1.32 16 9 C -0.12 -1.57 6.83 31.67 0.22 -1.36 16 10 C -0.16 -2.76 6.41 31.88 0.20 -2.56 16 11 C 0.09 1.72 2.69 45.99 0.12 1.85 16 12 H 0.08 1.62 7.59 -2.38 -0.02 1.60 16 13 N -0.68 -16.68 5.48 -486.07 -2.67 -19.34 16 14 C 0.08 2.50 4.49 86.30 0.39 2.89 16 15 C -0.05 -1.78 0.60 -52.18 -0.03 -1.82 16 16 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 17 C -0.12 -4.49 7.89 71.98 0.57 -3.92 16 18 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 19 C -0.50 -28.47 8.20 25.60 0.21 -28.26 16 20 H 0.04 2.70 5.92 -2.91 -0.02 2.68 16 21 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 22 N -0.96 -60.75 13.96 21.45 0.30 -60.46 16 23 Si 0.94 45.14 27.47 68.60 1.88 47.02 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 27 C 0.04 0.82 11.96 85.24 1.02 1.84 16 28 N -0.34 -8.09 12.58 -57.02 -0.72 -8.80 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.20 1.32 7.53 -2.91 -0.02 1.30 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.82 6.07 -2.39 -0.01 0.80 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.06 1.16 7.82 -2.39 -0.02 1.15 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.34 8.28 6.34 -89.68 -0.57 7.71 16 42 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 43 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 44 H 0.02 1.11 6.62 -2.39 -0.02 1.10 16 45 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.06 1.96 6.57 -2.38 -0.02 1.94 16 49 H 0.03 1.48 6.62 -2.39 -0.02 1.46 16 50 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 51 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 52 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 53 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -71.09 404.05 3.93 -67.16 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.24 Total: 20.19 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 6.37 Total: -37.85 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.57 Total: -96.52 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -71.09 3.93 -67.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926427310.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.023 kcal (2) G-P(sol) polarization free energy of solvation -71.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds