Wall clock time and date at job start Tue Mar 31 2020 13:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86808 * 119.99852 * 2 1 4 4 H 1.48496 * 109.47050 * 269.99646 * 3 2 1 5 5 H 1.48504 * 109.46715 * 29.99716 * 3 2 1 6 6 H 1.48500 * 109.46871 * 149.99489 * 3 2 1 7 7 C 1.38802 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36900 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.38874 * 120.00109 * 180.02562 * 9 7 2 11 11 N 1.32496 * 119.70633 * 359.97438 * 10 9 7 12 12 C 1.31871 * 121.64412 * 180.02562 * 11 10 9 13 13 C 1.38265 * 120.86503 * 0.02562 * 12 11 10 14 14 Br 1.89099 * 120.33410 * 180.02562 * 13 12 11 15 15 C 1.38902 * 119.32557 * 0.02562 * 13 12 11 16 16 C 1.38413 * 118.49314 * 359.97438 * 15 13 12 17 17 Br 1.89106 * 120.45802 * 179.97438 * 16 15 13 18 18 H 0.97005 * 120.00088 * 0.02562 * 1 2 3 19 19 H 0.97002 * 119.99697 * 359.97438 * 9 7 2 20 20 H 1.07996 * 119.57003 * 180.28147 * 12 11 10 21 21 H 1.08001 * 120.74857 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7002 7 6 2.0098 -1.2020 0.0005 8 1 3.0898 -1.2020 0.0010 9 7 1.3253 -2.3877 0.0005 10 6 2.0197 -3.5903 0.0016 11 7 3.3447 -3.5835 0.0021 12 6 4.0423 -4.7026 0.0026 13 6 3.4104 -5.9324 0.0021 14 35 4.4256 -7.5278 0.0036 15 6 2.0223 -5.9840 0.0005 16 6 1.3173 -4.7929 0.0000 17 35 -0.5738 -4.7983 -0.0029 18 1 -0.4850 0.8401 -0.0004 19 1 0.3553 -2.3876 0.0005 20 1 5.1213 -4.6579 0.0077 21 1 1.5050 -6.9321 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183265.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:52 Heat of formation + Delta-G solvation = 23.104039 kcal Electronic energy + Delta-G solvation = -11462.552629 eV Core-core repulsion = 9044.152856 eV Total energy + Delta-G solvation = -2418.399772 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 319.886 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.94502 -37.31737 -34.23515 -33.90754 -32.40606 -30.64886 -29.24053 -26.78147 -24.10397 -23.09455 -20.00513 -18.86719 -17.27747 -16.51075 -16.21847 -15.48687 -15.47996 -15.05420 -14.02726 -13.56396 -13.30309 -12.91297 -12.62210 -12.58711 -12.21568 -12.10905 -11.57180 -11.36560 -11.03634 -10.60333 -10.26023 -10.17882 -8.88104 -8.64823 -5.90498 0.22540 0.42245 0.69905 1.03672 1.41610 1.46852 1.55446 2.20037 2.66817 2.89538 3.20067 3.87722 3.98282 4.27794 4.54012 4.84745 5.01904 5.26837 5.49127 5.79614 6.57365 6.92187 7.15327 7.62017 8.50784 Molecular weight = 319.89amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.005668 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.551420 B = 4938.458848 C = 6479.168297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.020 4.020 3 Si 1.007 2.993 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.313 4.313 8 H 0.112 0.888 9 N -0.523 5.523 10 C 0.358 3.642 11 N -0.557 5.557 12 C 0.207 3.793 13 C -0.268 4.268 14 Br -0.041 7.041 15 C 0.043 3.957 16 C -0.262 4.262 17 Br -0.053 7.053 18 H 0.284 0.716 19 H 0.409 0.591 20 H 0.178 0.822 21 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -11.759 0.013 12.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.222 4.222 3 Si 0.829 3.171 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.443 4.443 8 H 0.129 0.871 9 N -0.127 5.127 10 C 0.111 3.889 11 N -0.278 5.278 12 C 0.037 3.963 13 C -0.357 4.357 14 Br 0.042 6.958 15 C 0.015 3.985 16 C -0.352 4.352 17 Br 0.031 6.969 18 H 0.093 0.907 19 H 0.248 0.752 20 H 0.195 0.805 21 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.660 -10.971 0.018 11.565 hybrid contribution -0.642 0.350 -0.012 0.731 sum 3.017 -10.621 0.007 11.041 Atomic orbital electron populations 1.69775 1.07450 1.30252 1.47116 1.26409 0.96613 1.03440 0.95752 0.84707 0.78054 0.75487 0.78890 1.19406 1.19917 1.18485 1.20227 0.94065 0.82697 1.47322 0.87056 1.41430 1.08784 1.02563 1.59944 1.18163 0.88866 0.85495 0.96331 1.67447 1.05423 1.30710 1.24180 1.22819 1.00361 0.85329 0.87743 1.21995 0.94072 0.92959 1.26633 1.96506 1.70901 1.29890 1.98529 1.21092 0.92197 0.96497 0.88739 1.21669 0.90208 0.95118 1.28198 1.96498 1.03229 1.98834 1.98377 0.90656 0.75229 0.80473 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.72 13.05 21.65 0.28 -47.43 14 2 C -0.02 -1.02 5.50 84.87 0.47 -0.55 14 3 Si 1.01 39.81 29.55 68.60 2.03 41.84 14 4 H -0.27 -10.35 7.11 99.48 0.71 -9.64 14 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 14 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 14 7 C -0.31 -16.35 9.70 84.04 0.82 -15.53 14 8 H 0.11 5.82 7.08 -2.91 -0.02 5.80 14 9 N -0.52 -26.42 5.37 -189.15 -1.02 -27.43 14 10 C 0.36 16.39 7.43 133.11 0.99 17.38 14 11 N -0.56 -24.39 9.09 -193.07 -1.75 -26.15 14 12 C 0.21 7.29 10.93 84.69 0.93 8.21 14 13 C -0.27 -8.66 6.25 22.44 0.14 -8.52 14 14 Br -0.04 -1.05 33.73 -20.37 -0.69 -1.73 14 15 C 0.04 1.44 9.69 22.47 0.22 1.66 14 16 C -0.26 -10.39 6.27 22.56 0.14 -10.25 14 17 Br -0.05 -1.89 32.15 -20.37 -0.65 -2.55 14 18 H 0.28 13.86 8.31 -92.70 -0.77 13.09 14 19 H 0.41 20.79 6.27 -92.71 -0.58 20.21 14 20 H 0.18 5.07 8.06 -2.91 -0.02 5.04 14 21 H 0.15 4.37 8.06 -2.91 -0.02 4.35 14 Total: -1.00 -53.91 237.81 2.60 -51.32 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.70 Total: 19.73 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 3.70 Total: -7.60 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -2.49 Total: -101.01 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 35 Polarization: -2.94 SS G_CDS: -1.34 Total: -4.28 kcal Total: -53.91 2.60 -51.32 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183265.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.422 kcal (2) G-P(sol) polarization free energy of solvation -53.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds