Wall clock time and date at job start Tue Mar 31 2020 12:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99679 * 2 1 4 4 H 1.08999 * 109.47726 * 29.99314 * 3 2 1 5 5 C 1.53005 * 109.46980 * 269.99471 * 3 2 1 6 6 C 1.50704 * 109.47131 * 65.00259 * 5 3 2 7 7 C 1.38228 * 119.99995 * 89.99778 * 6 5 3 8 8 C 1.38237 * 119.99946 * 179.97438 * 7 6 5 9 9 C 1.38237 * 119.99732 * 359.97438 * 8 7 6 10 10 C 1.38229 * 120.00029 * 0.27904 * 9 8 7 11 11 C 1.38231 * 120.00197 * 359.53474 * 10 9 8 12 12 C 1.53002 * 109.47200 * 149.99753 * 3 2 1 13 13 N 1.46891 * 109.47089 * 293.45290 * 12 3 2 14 14 C 1.46905 * 110.99839 * 77.71120 * 13 12 3 15 15 C 1.50700 * 109.47053 * 195.41680 * 14 13 12 16 16 H 1.08002 * 120.00344 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99859 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00450 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99612 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47416 * 60.00078 * 19 17 15 21 21 H 1.48501 * 109.46647 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47336 * 299.99631 * 19 17 15 23 23 C 1.46905 * 111.00115 * 201.66391 * 13 12 3 24 24 C 1.52999 * 109.46647 * 75.91820 * 23 13 12 25 25 C 1.53006 * 109.46861 * 183.59499 * 24 23 13 26 26 C 1.53000 * 109.47170 * 174.99934 * 25 24 23 27 27 C 1.52996 * 109.47228 * 295.00174 * 25 24 23 28 28 H 1.08998 * 109.47916 * 299.99969 * 1 2 3 29 29 H 1.09000 * 109.47454 * 60.00788 * 1 2 3 30 30 H 1.09008 * 109.46736 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47290 * 305.00072 * 5 3 2 32 32 H 1.09001 * 109.47038 * 185.00142 * 5 3 2 33 33 H 1.08004 * 120.00236 * 0.02562 * 7 6 5 34 34 H 1.07999 * 120.00262 * 180.02562 * 8 7 6 35 35 H 1.08006 * 119.99501 * 180.02562 * 9 8 7 36 36 H 1.08003 * 120.00141 * 179.72251 * 10 9 8 37 37 H 1.08003 * 120.00416 * 180.23354 * 11 10 9 38 38 H 1.09002 * 109.46859 * 53.45558 * 12 3 2 39 39 H 1.09003 * 109.47214 * 173.45281 * 12 3 2 40 40 H 1.08987 * 109.47301 * 315.41733 * 14 13 12 41 41 H 1.09000 * 109.47034 * 75.41864 * 14 13 12 42 42 H 0.97000 * 120.00408 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47251 * 195.91646 * 23 13 12 44 44 H 1.08997 * 109.47403 * 315.91771 * 23 13 12 45 45 H 1.09001 * 109.47032 * 303.59213 * 24 23 13 46 46 H 1.08994 * 109.47494 * 63.59728 * 24 23 13 47 47 H 1.09000 * 109.47183 * 55.00001 * 25 24 23 48 48 H 1.09000 * 109.47013 * 59.99963 * 26 25 24 49 49 H 1.09000 * 109.47218 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.46769 * 300.00127 * 26 25 24 51 51 H 1.09004 * 109.47398 * 59.99444 * 27 25 24 52 52 H 1.09000 * 109.47210 * 180.02562 * 27 25 24 53 53 H 1.09000 * 109.46898 * 300.00002 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9995 0.5137 5 6 2.2176 1.7713 -1.4426 6 6 0.8791 1.9308 -2.1164 7 6 0.2191 3.1442 -2.0638 8 6 -1.0085 3.2906 -2.6824 9 6 -1.5756 2.2238 -3.3540 10 6 -0.9180 1.0089 -3.4021 11 6 0.3113 0.8635 -2.7868 12 6 3.3588 1.2634 0.7213 13 7 3.1440 0.9688 2.1443 14 6 2.8755 -0.4606 2.3513 15 6 2.2954 -0.6687 3.7265 16 1 2.1419 0.1762 4.3814 17 6 1.9615 -1.9380 4.1490 18 7 2.1489 -2.9670 3.3518 19 14 1.2418 -2.1958 5.8534 20 1 -0.0257 -1.4319 5.9763 21 1 0.9705 -3.6408 6.0627 22 1 2.2077 -1.7199 6.8759 23 6 4.2881 1.4120 2.9522 24 6 4.2419 2.9331 3.1105 25 6 5.4806 3.4041 3.8752 26 6 5.4982 4.9332 3.9253 27 6 5.4427 2.8475 5.2998 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 2.8099 1.0319 -1.9815 32 1 2.7413 2.7273 -1.4439 33 1 0.6628 3.9781 -1.5402 34 1 -1.5240 4.2388 -2.6417 35 1 -2.5346 2.3383 -3.8376 36 1 -1.3632 0.1740 -3.9230 37 1 0.8269 -0.0846 -2.8276 38 1 3.9829 0.4866 0.2796 39 1 3.8548 2.2288 0.6210 40 1 2.1660 -0.8094 1.6011 41 1 3.8055 -1.0218 2.2605 42 1 1.9137 -3.8599 3.6489 43 1 4.2424 0.9429 3.9350 44 1 5.2156 1.1263 2.4561 45 1 4.2232 3.4004 2.1259 46 1 3.3453 3.2138 3.6630 47 1 6.3775 3.0468 3.3693 48 1 4.6012 5.2904 4.4312 49 1 6.3804 5.2687 4.4705 50 1 5.5252 5.3296 2.9103 51 1 5.4301 1.7581 5.2642 52 1 6.3249 3.1834 5.8448 53 1 4.5457 3.2048 5.8057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191368009.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:44 Heat of formation + Delta-G solvation = -34.803507 kcal Electronic energy + Delta-G solvation = -28022.861377 eV Core-core repulsion = 24472.954079 eV Total energy + Delta-G solvation = -3549.907297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 319.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69828 -37.99190 -36.83459 -35.01764 -33.11657 -32.34868 -30.92873 -30.05476 -28.65668 -27.02176 -26.63874 -25.75832 -24.63449 -22.55291 -22.51884 -21.81330 -20.58670 -19.83686 -19.53091 -16.76683 -16.42281 -16.07779 -15.39786 -15.31820 -14.99466 -14.84115 -14.55128 -14.32067 -14.13229 -13.69859 -13.51554 -13.39330 -12.98190 -12.91989 -12.63432 -12.44616 -12.23790 -12.18862 -11.94973 -11.74546 -11.61720 -11.37930 -11.12733 -11.01329 -11.00300 -10.93801 -10.66990 -10.63632 -10.55412 -10.32821 -10.30790 -10.07989 -9.89388 -9.61567 -9.29309 -8.94880 -8.85712 -8.33072 -8.09798 -7.10106 -5.87539 -3.86785 1.36980 1.41573 3.39050 3.43210 3.46045 3.78807 4.37918 4.51829 4.73301 4.89284 4.91908 5.01373 5.13369 5.15027 5.21923 5.28095 5.42989 5.47141 5.52752 5.57062 5.67000 5.68962 5.75171 5.81798 5.83385 5.92869 5.94692 6.01717 6.03157 6.05822 6.08166 6.08640 6.10128 6.17326 6.22691 6.30973 6.38322 6.39825 6.48324 6.49484 6.52224 6.52410 6.54688 6.70094 6.83363 6.93054 7.02686 7.53590 7.66834 7.87312 7.95455 8.35937 8.45829 8.73188 9.21352 9.74830 11.22816 Molecular weight = 319.23amu Principal moments of inertia in cm(-1) A = 0.008848 B = 0.004277 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.922572 B = 6545.228792 C = 8972.713690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.358 6.358 3 C 0.106 3.894 4 H 0.065 0.935 5 C -0.108 4.108 6 C -0.073 4.073 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.129 4.129 10 C -0.125 4.125 11 C -0.103 4.103 12 C 0.057 3.943 13 N -0.534 5.534 14 C 0.180 3.820 15 C -0.499 4.499 16 H 0.057 0.943 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.060 3.940 24 C -0.107 4.107 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.148 4.148 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.071 0.929 41 H -0.018 1.018 42 H 0.258 0.742 43 H 0.084 0.916 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.062 0.938 52 H 0.045 0.955 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 13.516 -10.405 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.276 6.276 3 C 0.047 3.953 4 H 0.083 0.917 5 C -0.146 4.146 6 C -0.073 4.073 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.147 4.147 10 C -0.143 4.143 11 C -0.121 4.121 12 C -0.072 4.072 13 N -0.258 5.258 14 C 0.055 3.945 15 C -0.538 4.538 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.068 4.068 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.201 4.201 27 C -0.206 4.206 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.088 0.912 41 H -0.001 1.001 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.064 0.936 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.927 13.388 -10.243 16.882 hybrid contribution 0.045 -0.530 0.712 0.888 sum -0.883 12.859 -9.531 16.030 Atomic orbital electron populations 1.22991 0.82097 1.02263 0.99868 1.88022 1.19025 1.26355 1.94245 1.22024 0.95736 0.85931 0.91582 0.91724 1.21257 0.93756 1.02326 0.97238 1.19911 0.96765 0.93493 0.97171 1.21063 0.95497 0.97251 0.99998 1.21090 0.95817 0.98787 0.98352 1.21094 0.99892 0.93469 1.00212 1.21140 0.95463 0.97505 1.00147 1.21102 0.95660 0.98681 0.96689 1.22124 0.94311 0.99692 0.91072 1.62092 1.37252 1.23183 1.03246 1.20124 0.96007 0.79975 0.98387 1.21154 1.40590 0.92355 0.99736 0.92438 1.24927 0.96349 0.96135 0.97094 1.69964 1.48979 0.98851 1.35940 0.86705 0.79678 0.76760 0.85066 1.20401 1.21517 1.20473 1.22064 0.91196 0.94022 0.99501 1.21652 0.97090 0.96548 0.99201 1.21106 0.98828 0.94955 0.96654 1.21827 1.01263 0.95902 1.01144 1.21877 1.00970 1.01861 0.95860 0.94339 0.93617 0.90577 0.90293 0.90413 0.86201 0.86391 0.86493 0.86245 0.85702 0.94898 0.91333 0.91174 1.00053 0.93201 0.89740 0.96700 0.92982 0.91604 0.91827 0.92836 0.93278 0.93116 0.91858 0.93583 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.23 101.05 1.03 1.46 16 2 O -0.36 -7.05 7.34 -35.23 -0.26 -7.30 16 3 C 0.11 1.77 2.54 -26.73 -0.07 1.71 16 4 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 5 C -0.11 -1.43 5.06 -27.88 -0.14 -1.57 16 6 C -0.07 -0.94 3.89 -104.62 -0.41 -1.35 16 7 C -0.12 -1.41 9.70 -39.59 -0.38 -1.79 16 8 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 9 C -0.13 -1.36 10.05 -39.59 -0.40 -1.75 16 10 C -0.12 -1.40 9.94 -39.59 -0.39 -1.79 16 11 C -0.10 -1.31 6.79 -39.58 -0.27 -1.57 16 12 C 0.06 1.02 4.64 -3.83 -0.02 1.00 16 13 N -0.53 -11.41 4.30 -236.08 -1.02 -12.43 16 14 C 0.18 4.74 4.51 -4.97 -0.02 4.72 16 15 C -0.50 -14.19 8.33 -34.44 -0.29 -14.48 16 16 H 0.06 1.63 7.67 -52.49 -0.40 1.22 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.06 1.16 4.46 -3.82 -0.02 1.14 16 24 C -0.11 -1.65 4.83 -26.73 -0.13 -1.78 16 25 C -0.10 -1.27 2.92 -90.62 -0.26 -1.54 16 26 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 27 C -0.15 -2.02 8.95 37.16 0.33 -1.68 16 28 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.05 0.70 3.84 -51.93 -0.20 0.50 16 30 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 39 H 0.07 1.05 6.45 -51.93 -0.34 0.71 16 40 H 0.07 1.97 5.06 -51.94 -0.26 1.71 16 41 H -0.02 -0.53 8.06 -51.93 -0.42 -0.95 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.08 1.82 5.60 -51.93 -0.29 1.53 16 44 H 0.01 0.28 8.00 -51.93 -0.42 -0.13 16 45 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.96 6.65 -51.93 -0.35 0.61 16 52 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 53 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 409.10 15.07 6.17 6.17 Total: -1.00 -30.90 409.10 -10.71 -41.60 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -9.73 Total: 2.09 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -1.58 Total: -20.74 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.28 Total: -38.85 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.26 Total: -7.30 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.90 -10.71 -41.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191368009.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.800 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds